Wall clock time and date at job start Tue Mar 31 2020 18:32:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53012 * 109.46987 * 2 1 4 4 C 1.53006 * 109.46740 * 179.97438 * 3 2 1 5 5 C 1.52994 * 109.47127 * 60.00123 * 4 3 2 6 6 N 1.46500 * 109.46546 * 179.97438 * 4 3 2 7 7 C 1.34771 * 119.99724 * 179.97438 * 6 4 3 8 8 O 1.21285 * 120.00080 * 0.02562 * 7 6 4 9 9 C 1.50698 * 120.00226 * 180.02562 * 7 6 4 10 10 C 1.50702 * 109.47393 * 179.97438 * 9 7 6 11 11 C 1.38319 * 119.96705 * 269.72174 * 10 9 7 12 12 C 1.38280 * 120.14038 * 179.76213 * 11 10 9 13 13 C 1.38127 * 120.06375 * 0.51749 * 12 11 10 14 14 C 1.38858 * 119.93231 * 359.74330 * 13 12 11 15 15 O 1.35749 * 120.06720 * 179.97438 * 14 13 12 16 16 C 1.34826 * 117.00193 * 354.48486 * 15 14 13 17 17 H 1.07998 * 120.00172 * 5.05662 * 16 15 14 18 18 C 1.38661 * 120.00113 * 185.06152 * 16 15 14 19 19 N 1.31557 * 119.99862 * 359.97438 * 18 16 15 20 20 Si 1.86794 * 120.00122 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.47401 * 59.99790 * 20 18 16 22 22 H 1.48499 * 109.47173 * 179.97438 * 20 18 16 23 23 H 1.48497 * 109.47117 * 299.99845 * 20 18 16 24 24 C 1.38081 * 119.96287 * 90.00185 * 10 9 7 25 25 C 1.50699 * 109.46962 * 299.99931 * 4 3 2 26 26 O 1.20826 * 120.00080 * 95.00625 * 25 4 3 27 27 O 1.34230 * 119.99601 * 274.99916 * 25 4 3 28 28 H 1.09000 * 109.47186 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46904 * 300.00439 * 1 2 3 30 30 H 1.09008 * 109.46758 * 59.99933 * 1 2 3 31 31 H 1.09000 * 109.47354 * 239.99848 * 2 1 3 32 32 H 1.08999 * 109.47111 * 119.99621 * 2 1 3 33 33 H 1.09000 * 109.47197 * 59.99752 * 3 2 1 34 34 H 1.08999 * 109.46886 * 299.99759 * 3 2 1 35 35 H 1.08999 * 109.47350 * 59.99493 * 5 4 3 36 36 H 1.08997 * 109.47183 * 179.97438 * 5 4 3 37 37 H 1.09003 * 109.47413 * 299.99654 * 5 4 3 38 38 H 0.97002 * 120.00321 * 0.02562 * 6 4 3 39 39 H 1.08999 * 109.47267 * 300.00019 * 9 7 6 40 40 H 1.09000 * 109.46965 * 60.00095 * 9 7 6 41 41 H 1.07995 * 119.93260 * 0.02562 * 11 10 9 42 42 H 1.07996 * 119.97072 * 180.25558 * 12 11 10 43 43 H 1.08000 * 120.03408 * 179.76074 * 13 12 11 44 44 H 0.96995 * 120.00133 * 180.02562 * 19 18 16 45 45 H 1.08005 * 120.03711 * 359.95542 * 24 10 9 46 46 H 0.96707 * 116.99464 * 180.02562 * 27 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5701 1.4426 0.0006 5 6 4.0805 0.7212 -1.2482 6 7 4.0583 2.8238 0.0000 7 6 5.3833 3.0701 0.0010 8 8 6.1715 2.1482 0.0018 9 6 5.8857 4.4909 0.0009 10 6 7.3927 4.4909 0.0027 11 6 8.0822 4.4973 1.2018 12 6 9.4650 4.4923 1.2076 13 6 10.1620 4.4918 0.0151 14 6 9.4727 4.4909 -1.1903 15 8 10.1550 4.4909 -2.3639 16 6 11.4963 4.6073 -2.2922 17 1 11.9872 4.6129 -1.3302 18 6 12.2455 4.7200 -3.4535 19 7 11.6476 4.7129 -4.6253 20 14 14.1038 4.8821 -3.3541 21 1 14.6693 3.6877 -2.6769 22 1 14.6656 4.9857 -4.7248 23 1 14.4537 6.1011 -2.5818 24 6 8.0838 4.4904 -1.1928 25 6 4.0718 0.7323 1.2314 26 8 4.3592 -0.4400 1.1775 27 8 4.1995 1.4022 2.3876 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8901 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.6766 1.9565 0.8900 34 1 1.6767 1.9564 -0.8900 35 1 3.7176 1.2348 -2.1385 36 1 5.1705 0.7215 -1.2480 37 1 3.7172 -0.3065 -1.2483 38 1 3.4280 3.5611 -0.0003 39 1 5.5231 5.0044 -0.8895 40 1 5.5217 5.0049 0.8905 41 1 7.5395 4.5018 2.1354 42 1 10.0005 4.4932 2.1454 43 1 11.2420 4.4919 0.0202 44 1 12.1717 4.7913 -5.4377 45 1 7.5449 4.4893 -2.1287 46 1 4.5256 0.9042 3.1498 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001595546743.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:32:55 Heat of formation + Delta-G solvation = -166.977215 kcal Electronic energy + Delta-G solvation = -28945.292389 eV Core-core repulsion = 24799.305229 eV Total energy + Delta-G solvation = -4145.987161 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.12974 -40.92356 -40.21886 -38.35048 -37.69850 -37.05608 -34.81011 -34.34316 -33.54276 -31.67964 -30.80226 -28.40877 -27.92856 -27.22744 -25.70442 -23.69081 -23.21585 -22.55362 -21.28994 -20.97403 -19.54639 -19.18007 -18.80005 -18.20627 -18.08421 -16.84472 -16.74354 -16.54341 -16.46568 -16.11510 -15.86726 -15.57461 -15.44936 -14.96792 -14.91014 -14.58885 -14.44998 -14.30915 -13.98719 -13.68569 -13.55567 -13.23002 -13.17698 -12.95620 -12.80916 -12.71553 -12.56955 -12.45759 -12.43068 -12.34221 -12.21188 -12.13355 -12.05821 -11.68028 -11.47524 -11.20646 -10.86353 -10.77321 -10.30409 -9.62796 -8.97150 -8.47061 -6.15488 0.52029 0.76636 1.09982 1.33226 1.44486 1.49841 1.57798 1.98019 2.16203 2.17797 2.84521 3.17862 3.44915 3.49217 3.64251 3.80118 3.98584 4.08727 4.12025 4.13456 4.32784 4.35207 4.46737 4.48323 4.58077 4.62865 4.67952 4.70401 4.74800 4.75927 4.83546 4.93037 5.07672 5.11842 5.12968 5.23051 5.29380 5.30752 5.32654 5.43775 5.55628 5.65792 5.73543 5.76190 6.02889 6.24305 6.53500 6.90042 6.97387 7.25920 7.79234 8.76289 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.020468 B = 0.002399 C = 0.002300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1367.690676 B =11666.523645 C =12169.663565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.132 4.132 3 C -0.111 4.111 4 C 0.193 3.807 5 C -0.160 4.160 6 N -0.702 5.702 7 C 0.518 3.482 8 O -0.569 6.569 9 C -0.088 4.088 10 C -0.025 4.025 11 C -0.180 4.180 12 C -0.076 4.076 13 C -0.248 4.248 14 C 0.110 3.890 15 O -0.234 6.234 16 C -0.415 4.415 17 H 0.099 0.901 18 C -0.024 4.024 19 N -0.922 5.922 20 Si 1.019 2.981 21 H -0.260 1.260 22 H -0.270 1.270 23 H -0.255 1.255 24 C -0.191 4.191 25 C 0.482 3.518 26 O -0.546 6.546 27 O -0.506 6.506 28 H 0.054 0.946 29 H 0.062 0.938 30 H 0.070 0.930 31 H 0.067 0.933 32 H 0.043 0.957 33 H 0.099 0.901 34 H 0.118 0.882 35 H 0.094 0.906 36 H 0.043 0.957 37 H 0.079 0.921 38 H 0.428 0.572 39 H 0.128 0.872 40 H 0.147 0.853 41 H 0.147 0.853 42 H 0.143 0.857 43 H 0.116 0.884 44 H 0.273 0.727 45 H 0.108 0.892 46 H 0.421 0.579 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.582 -1.542 13.639 28.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.170 4.170 3 C -0.148 4.148 4 C 0.104 3.896 5 C -0.218 4.218 6 N -0.359 5.359 7 C 0.306 3.694 8 O -0.446 6.446 9 C -0.128 4.128 10 C -0.026 4.026 11 C -0.198 4.198 12 C -0.094 4.094 13 C -0.268 4.268 14 C 0.060 3.940 15 O -0.141 6.141 16 C -0.491 4.491 17 H 0.116 0.884 18 C -0.221 4.221 19 N -0.560 5.560 20 Si 0.838 3.162 21 H -0.185 1.185 22 H -0.194 1.194 23 H -0.179 1.179 24 C -0.210 4.210 25 C 0.324 3.676 26 O -0.435 6.435 27 O -0.319 6.319 28 H 0.073 0.927 29 H 0.081 0.919 30 H 0.089 0.911 31 H 0.086 0.914 32 H 0.062 0.938 33 H 0.117 0.883 34 H 0.137 0.863 35 H 0.113 0.887 36 H 0.062 0.938 37 H 0.097 0.903 38 H 0.268 0.732 39 H 0.146 0.854 40 H 0.164 0.836 41 H 0.164 0.836 42 H 0.161 0.839 43 H 0.134 0.866 44 H 0.082 0.918 45 H 0.126 0.874 46 H 0.281 0.719 Dipole moment (debyes) X Y Z Total from point charges -24.126 -2.291 12.858 27.434 hybrid contribution 1.452 -0.425 0.141 1.520 sum -22.674 -2.716 13.000 26.277 Atomic orbital electron populations 1.21720 0.93389 1.02292 1.02933 1.21638 0.97771 0.95447 1.02112 1.21961 0.86840 0.99335 1.06696 1.20270 0.97614 0.82556 0.89129 1.22198 1.01962 1.01574 0.96024 1.45818 1.06828 1.07262 1.75962 1.21046 0.82164 0.91966 0.74228 1.90783 1.56654 1.47617 1.49569 1.20702 0.90586 0.93132 1.08332 1.19198 0.95092 0.96691 0.91609 1.20972 0.93784 1.07320 0.97738 1.21126 0.94924 0.96545 0.96787 1.21292 1.00418 1.12175 0.92867 1.19904 0.92956 0.94551 0.86559 1.83930 1.21256 1.81748 1.27156 1.21768 0.79180 1.52623 0.95502 0.88377 1.26605 1.06161 0.95938 0.93443 1.70178 1.38635 1.48827 0.98354 0.84648 0.73336 0.79834 0.78379 1.18488 1.19407 1.17932 1.20238 0.90585 1.11296 0.98877 1.24137 0.72694 0.85383 0.85400 1.90692 1.47607 1.19469 1.85748 1.84477 1.78754 1.47597 1.21031 0.92655 0.91877 0.91134 0.91416 0.93804 0.88253 0.86346 0.88738 0.93817 0.90261 0.73220 0.85429 0.83555 0.83550 0.83924 0.86639 0.91838 0.87354 0.71881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 9.91 71.98 0.71 -0.48 16 2 C -0.13 -1.64 5.27 30.60 0.16 -1.48 16 3 C -0.11 -1.08 4.37 30.60 0.13 -0.94 16 4 C 0.19 3.55 0.80 2.86 0.00 3.55 16 5 C -0.16 -3.70 7.58 71.98 0.55 -3.15 16 6 N -0.70 -11.16 4.88 -426.33 -2.08 -13.24 16 7 C 0.52 13.04 7.15 87.66 0.63 13.67 16 8 O -0.57 -21.27 13.24 -3.05 -0.04 -21.31 16 9 C -0.09 -1.89 5.83 29.10 0.17 -1.72 16 10 C -0.03 -0.87 4.37 -19.88 -0.09 -0.95 16 11 C -0.18 -5.89 9.70 22.30 0.22 -5.67 16 12 C -0.08 -2.80 10.04 22.25 0.22 -2.58 16 13 C -0.25 -11.62 9.17 22.39 0.21 -11.42 16 14 C 0.11 5.85 6.65 22.58 0.15 6.00 16 15 O -0.23 -14.80 9.76 -22.68 -0.22 -15.02 16 16 C -0.41 -25.26 9.49 67.92 0.64 -24.62 16 17 H 0.10 5.52 5.20 -2.91 -0.02 5.51 16 18 C -0.02 -1.43 5.49 84.84 0.47 -0.97 16 19 N -0.92 -58.26 13.67 21.62 0.30 -57.97 16 20 Si 1.02 44.42 29.55 68.60 2.03 46.45 16 21 H -0.26 -10.78 7.11 99.48 0.71 -10.08 16 22 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 23 H -0.26 -10.36 7.11 99.48 0.71 -9.65 16 24 C -0.19 -8.54 9.65 22.39 0.22 -8.33 16 25 C 0.48 11.69 4.80 71.24 0.34 12.03 16 26 O -0.55 -17.23 16.22 21.96 0.36 -16.87 16 27 O -0.51 -9.59 13.03 -51.41 -0.67 -10.26 16 28 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 29 H 0.06 0.43 8.14 -2.39 -0.02 0.41 16 30 H 0.07 0.42 8.14 -2.38 -0.02 0.40 16 31 H 0.07 0.94 6.43 -2.39 -0.02 0.93 16 32 H 0.04 0.74 6.82 -2.39 -0.02 0.72 16 33 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 34 H 0.12 0.56 8.14 -2.39 -0.02 0.54 16 35 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 36 H 0.04 1.43 6.17 -2.39 -0.01 1.41 16 37 H 0.08 1.79 6.16 -2.39 -0.01 1.77 16 38 H 0.43 2.87 8.47 -92.71 -0.79 2.09 16 39 H 0.13 2.14 8.08 -2.39 -0.02 2.13 16 40 H 0.15 1.87 8.08 -2.39 -0.02 1.85 16 41 H 0.15 3.59 8.06 -2.91 -0.02 3.57 16 42 H 0.14 4.19 8.06 -2.91 -0.02 4.16 16 43 H 0.12 5.49 5.64 -2.91 -0.02 5.47 16 44 H 0.27 15.76 8.31 -92.71 -0.77 14.99 16 45 H 0.11 4.80 8.06 -2.91 -0.02 4.78 16 46 H 0.42 5.24 9.10 -74.05 -0.67 4.57 16 Total: -1.00 -91.40 383.44 3.97 -87.43 By element: Atomic # 1 Polarization: 28.28 SS G_CDS: -0.43 Total: 27.85 kcal Atomic # 6 Polarization: -31.79 SS G_CDS: 4.73 Total: -27.06 kcal Atomic # 7 Polarization: -69.43 SS G_CDS: -1.78 Total: -71.21 kcal Atomic # 8 Polarization: -62.89 SS G_CDS: -0.58 Total: -63.46 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 2.03 Total: 46.45 kcal Total: -91.40 3.97 -87.43 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001595546743.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.544 kcal (2) G-P(sol) polarization free energy of solvation -91.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds