Wall clock time and date at job start Tue Mar 31 2020 18:52:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34227 * 116.99838 * 2 1 4 4 O 1.20819 * 120.00351 * 0.02562 * 3 2 1 5 5 C 1.50702 * 119.99618 * 180.02562 * 3 2 1 6 6 H 1.09003 * 109.46945 * 300.00079 * 5 3 2 7 7 N 1.46905 * 109.46876 * 180.02562 * 5 3 2 8 8 C 1.46901 * 110.99870 * 85.00155 * 7 5 3 9 9 C 1.53004 * 109.46916 * 180.02562 * 8 7 5 10 10 C 1.52999 * 109.46923 * 299.99733 * 9 8 7 11 11 C 1.52999 * 109.46998 * 59.99872 * 9 8 7 12 12 C 1.50703 * 109.46807 * 179.97438 * 9 8 7 13 13 H 1.07995 * 120.00107 * 359.97438 * 12 9 8 14 14 C 1.37878 * 119.99714 * 179.97438 * 12 9 8 15 15 N 1.31510 * 119.99944 * 0.02562 * 14 12 9 16 16 Si 1.86799 * 119.99765 * 179.97438 * 14 12 9 17 17 H 1.48499 * 109.47110 * 90.00207 * 16 14 12 18 18 H 1.48501 * 109.47137 * 210.00199 * 16 14 12 19 19 H 1.48496 * 109.47323 * 330.00240 * 16 14 12 20 20 C 1.50702 * 109.47188 * 60.00222 * 5 3 2 21 21 C 1.38390 * 119.92091 * 79.72428 * 20 5 3 22 22 C 1.38347 * 120.29958 * 179.76595 * 21 20 5 23 23 C 1.37970 * 120.15131 * 0.50726 * 22 21 20 24 24 C 1.39614 * 119.84286 * 359.74933 * 23 22 21 25 25 C 1.47727 * 120.14376 * 180.02562 * 24 23 22 26 26 O 1.21470 * 119.99472 * 179.97438 * 25 24 23 27 27 O 1.34706 * 120.00568 * 359.97270 * 25 24 23 28 28 C 1.37925 * 119.92388 * 259.99832 * 20 5 3 29 29 H 1.08998 * 109.47307 * 59.99911 * 1 2 3 30 30 H 1.09004 * 109.46968 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47423 * 299.99680 * 1 2 3 32 32 H 1.00901 * 110.99869 * 321.04866 * 7 5 3 33 33 H 1.09004 * 109.47031 * 299.99620 * 8 7 5 34 34 H 1.08995 * 109.47111 * 59.99900 * 8 7 5 35 35 H 1.09002 * 109.47301 * 60.00027 * 10 9 8 36 36 H 1.09001 * 109.47017 * 180.02562 * 10 9 8 37 37 H 1.09005 * 109.47249 * 300.00302 * 10 9 8 38 38 H 1.09001 * 109.46999 * 60.00126 * 11 9 8 39 39 H 1.09001 * 109.46478 * 179.97438 * 11 9 8 40 40 H 1.08993 * 109.47197 * 299.99817 * 11 9 8 41 41 H 0.97007 * 120.00038 * 179.97438 * 15 14 12 42 42 H 1.07998 * 119.85350 * 0.02562 * 21 20 5 43 43 H 1.07999 * 119.92810 * 180.25976 * 22 21 20 44 44 H 1.07991 * 120.07700 * 179.72201 * 23 22 21 45 45 H 0.96698 * 117.00025 * 180.02562 * 27 25 24 46 46 H 1.07991 * 120.07456 * 359.97438 * 28 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5663 1.2748 -0.0006 6 1 3.9564 0.7805 0.8892 7 7 3.9828 2.6836 0.0002 8 6 4.0181 3.2214 1.3667 9 6 4.4545 4.6873 1.3268 10 6 5.8480 4.7877 0.7031 11 6 3.4607 5.4925 0.4872 12 6 4.4900 5.2392 2.7286 13 1 4.2272 4.6077 3.5644 14 6 4.8581 6.5503 2.9442 15 7 5.1777 7.3194 1.9264 16 14 4.9015 7.2346 4.6818 17 1 6.2504 7.0204 5.2646 18 1 4.6017 8.6887 4.6488 19 1 3.8868 6.5388 5.5133 20 6 4.1046 0.5919 -1.2314 21 6 4.0979 1.2538 -2.4468 22 6 4.5946 0.6362 -3.5807 23 6 5.0908 -0.6492 -3.5087 24 6 5.0957 -1.3246 -2.2869 25 6 5.6259 -2.7009 -2.2021 26 8 5.6292 -3.2858 -1.1375 27 8 6.1056 -3.3071 -3.3052 28 6 4.5977 -0.6933 -1.1452 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 3.3826 3.2384 -0.5914 33 1 3.0252 3.1503 1.8109 34 1 4.7257 2.6474 1.9649 35 1 5.8219 4.3886 -0.3109 36 1 6.1591 5.8320 0.6750 37 1 6.5560 4.2139 1.3012 38 1 2.4680 5.4210 0.9316 39 1 3.7715 6.5369 0.4591 40 1 3.4346 5.0935 -0.5267 41 1 5.4363 8.2420 2.0780 42 1 3.7070 2.2586 -2.5095 43 1 4.5903 1.1598 -4.5252 44 1 5.4741 -1.1318 -4.3955 45 1 6.4415 -4.2078 -3.2003 46 1 4.5986 -1.2101 -0.1969 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001598708879.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:52:56 Heat of formation + Delta-G solvation = -147.244756 kcal Electronic energy + Delta-G solvation = -29395.966723 eV Core-core repulsion = 25250.835226 eV Total energy + Delta-G solvation = -4145.131497 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.90983 -40.41551 -38.92064 -37.26029 -36.31076 -36.17760 -34.44330 -31.96006 -31.43369 -30.27063 -28.31199 -26.23072 -25.56476 -25.25156 -24.97477 -23.46691 -22.45766 -21.56834 -20.36123 -18.63705 -18.24286 -17.89906 -17.38499 -16.98419 -16.33297 -16.11817 -15.85396 -15.82509 -15.22561 -15.07130 -14.52275 -14.22163 -13.75280 -13.70862 -13.53343 -13.35845 -12.86638 -12.78738 -12.55239 -12.39789 -12.07933 -11.95354 -11.79610 -11.77960 -11.33737 -11.15157 -11.02191 -10.84719 -10.83295 -10.74678 -10.61201 -10.59981 -10.19359 -10.07536 -9.41533 -9.22002 -9.19684 -8.95373 -8.65803 -8.31463 -8.09315 -5.91527 -4.01744 0.52684 1.11573 2.17275 2.34966 2.70349 2.79117 3.31965 3.38850 3.41884 3.59026 4.32991 4.46003 4.59467 4.67556 4.75335 4.87378 4.97172 5.03148 5.07946 5.11617 5.20536 5.34395 5.39517 5.43735 5.64204 5.72023 6.04758 6.15177 6.18257 6.22109 6.29296 6.33848 6.36753 6.62970 6.68206 6.87102 7.03421 7.17008 7.27085 7.35800 7.55913 7.64972 7.67074 7.74960 7.76541 7.81361 8.19959 8.32013 8.54049 8.98842 9.63159 11.09151 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.013879 B = 0.003012 C = 0.002779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2017.006586 B = 9295.097121 C =10072.907311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.358 6.358 3 C 0.434 3.566 4 O -0.494 6.494 5 C 0.134 3.866 6 H 0.124 0.876 7 N -0.648 5.648 8 C 0.068 3.932 9 C 0.072 3.928 10 C -0.121 4.121 11 C -0.131 4.131 12 C -0.507 4.507 13 H 0.052 0.948 14 C 0.066 3.934 15 N -0.884 5.884 16 Si 0.889 3.111 17 H -0.282 1.282 18 H -0.287 1.287 19 H -0.276 1.276 20 C -0.076 4.076 21 C -0.051 4.051 22 C -0.134 4.134 23 C -0.059 4.059 24 C -0.134 4.134 25 C 0.529 3.471 26 O -0.514 6.514 27 O -0.514 6.514 28 C -0.033 4.033 29 H 0.061 0.939 30 H 0.098 0.902 31 H 0.062 0.938 32 H 0.352 0.648 33 H 0.024 0.976 34 H 0.062 0.938 35 H 0.019 0.981 36 H 0.075 0.925 37 H 0.019 0.981 38 H 0.022 0.978 39 H 0.083 0.917 40 H 0.008 0.992 41 H 0.258 0.742 42 H 0.133 0.867 43 H 0.134 0.866 44 H 0.137 0.863 45 H 0.413 0.587 46 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.197 -18.342 -12.406 22.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.273 6.273 3 C 0.274 3.726 4 O -0.380 6.380 5 C 0.021 3.979 6 H 0.142 0.858 7 N -0.281 5.281 8 C -0.060 4.060 9 C 0.072 3.928 10 C -0.178 4.178 11 C -0.188 4.188 12 C -0.546 4.546 13 H 0.070 0.930 14 C -0.135 4.135 15 N -0.523 5.523 16 Si 0.717 3.283 17 H -0.208 1.208 18 H -0.213 1.213 19 H -0.201 1.201 20 C -0.077 4.077 21 C -0.069 4.069 22 C -0.152 4.152 23 C -0.078 4.078 24 C -0.136 4.136 25 C 0.374 3.626 26 O -0.403 6.403 27 O -0.326 6.326 28 C -0.051 4.051 29 H 0.079 0.921 30 H 0.116 0.884 31 H 0.081 0.919 32 H 0.175 0.825 33 H 0.043 0.957 34 H 0.080 0.920 35 H 0.038 0.962 36 H 0.094 0.906 37 H 0.038 0.962 38 H 0.041 0.959 39 H 0.102 0.898 40 H 0.027 0.973 41 H 0.068 0.932 42 H 0.150 0.850 43 H 0.151 0.849 44 H 0.155 0.845 45 H 0.272 0.728 46 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -2.865 -17.722 -12.200 21.706 hybrid contribution -0.952 -0.023 1.325 1.631 sum -3.816 -17.745 -10.876 21.160 Atomic orbital electron populations 1.23241 0.76957 1.03385 1.02500 1.86568 1.23051 1.33794 1.83922 1.25329 0.93404 0.81640 0.72277 1.90714 1.66567 1.36219 1.44545 1.20419 0.84521 0.94730 0.98226 0.85833 1.61145 1.53883 0.98400 1.14709 1.22373 0.98696 0.99345 0.85562 1.18068 0.92675 0.87004 0.95082 1.21669 0.97453 1.02423 0.96294 1.21815 0.97842 1.04037 0.95143 1.21076 1.45417 0.96213 0.91862 0.92962 1.24868 0.95135 0.96934 0.96561 1.69831 1.46108 1.07000 1.29341 0.86649 0.78254 0.78134 0.85237 1.20771 1.21330 1.20119 1.19286 1.00762 0.93587 0.94063 1.21348 0.94551 0.99529 0.91522 1.21148 1.00070 0.94986 0.99004 1.21447 0.95329 0.94315 0.96670 1.18883 1.07432 0.91677 0.95564 1.20905 0.74043 0.86722 0.80927 1.90899 1.53416 1.65995 1.29998 1.84551 1.74216 1.35021 1.38766 1.21055 0.92898 0.93177 0.98003 0.92066 0.88353 0.91922 0.82459 0.95741 0.91990 0.96162 0.90594 0.96158 0.95911 0.89816 0.97263 0.93170 0.84951 0.84859 0.84534 0.72829 0.84199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 10.56 101.05 1.07 1.41 16 2 O -0.36 -4.73 10.48 -39.25 -0.41 -5.14 16 3 C 0.43 6.56 7.06 36.01 0.25 6.81 16 4 O -0.49 -8.87 15.05 -18.74 -0.28 -9.15 16 5 C 0.13 1.93 2.70 -70.01 -0.19 1.74 16 6 H 0.12 1.67 7.65 -51.93 -0.40 1.27 16 7 N -0.65 -11.12 4.77 -109.18 -0.52 -11.64 16 8 C 0.07 1.39 4.28 -3.82 -0.02 1.38 16 9 C 0.07 1.73 0.57 -155.66 -0.09 1.64 16 10 C -0.12 -2.87 8.09 37.16 0.30 -2.57 16 11 C -0.13 -3.12 7.92 37.16 0.29 -2.83 16 12 C -0.51 -13.61 8.01 -34.44 -0.28 -13.89 16 13 H 0.05 1.40 7.74 -52.49 -0.41 1.00 16 14 C 0.07 1.79 5.15 -17.82 -0.09 1.70 16 15 N -0.88 -24.39 9.35 55.43 0.52 -23.87 16 16 Si 0.89 21.17 29.54 -169.99 -5.02 16.15 16 17 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 18 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 19 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 20 C -0.08 -0.97 4.87 -104.68 -0.51 -1.48 16 21 C -0.05 -0.60 9.31 -39.49 -0.37 -0.97 16 22 C -0.13 -1.29 10.03 -39.64 -0.40 -1.69 16 23 C -0.06 -0.56 9.62 -39.17 -0.38 -0.94 16 24 C -0.13 -1.49 5.87 -104.98 -0.62 -2.11 16 25 C 0.53 5.76 8.27 34.61 0.29 6.05 16 26 O -0.51 -7.03 17.13 -19.24 -0.33 -7.36 16 27 O -0.51 -3.84 12.68 -40.51 -0.51 -4.35 16 28 C -0.03 -0.39 9.21 -39.17 -0.36 -0.75 16 29 H 0.06 0.62 8.13 -51.93 -0.42 0.19 16 30 H 0.10 0.72 8.14 -51.93 -0.42 0.29 16 31 H 0.06 0.66 8.13 -51.93 -0.42 0.24 16 32 H 0.35 6.27 5.13 -39.29 -0.20 6.07 16 33 H 0.02 0.53 7.62 -51.93 -0.40 0.13 16 34 H 0.06 1.25 8.05 -51.93 -0.42 0.83 16 35 H 0.02 0.43 7.60 -51.93 -0.39 0.04 16 36 H 0.08 2.00 6.07 -51.93 -0.32 1.68 16 37 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 38 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.08 2.20 6.07 -51.93 -0.32 1.89 16 40 H 0.01 0.18 6.57 -51.93 -0.34 -0.16 16 41 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 42 H 0.13 1.56 7.24 -52.49 -0.38 1.18 16 43 H 0.13 0.96 8.06 -52.49 -0.42 0.54 16 44 H 0.14 1.01 7.61 -52.49 -0.40 0.61 16 45 H 0.41 1.24 9.11 45.56 0.42 1.66 16 46 H 0.14 1.64 7.63 -52.49 -0.40 1.24 16 LS Contribution 383.03 15.07 5.77 5.77 Total: -1.00 -32.06 383.03 -7.50 -39.56 By element: Atomic # 1 Polarization: 12.15 SS G_CDS: -5.62 Total: 6.53 kcal Atomic # 6 Polarization: -5.41 SS G_CDS: -1.09 Total: -6.50 kcal Atomic # 7 Polarization: -35.50 SS G_CDS: 0.00 Total: -35.51 kcal Atomic # 8 Polarization: -24.46 SS G_CDS: -1.54 Total: -26.00 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -32.06 -7.50 -39.56 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001598708879.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.688 kcal (2) G-P(sol) polarization free energy of solvation -32.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.557 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds