Wall clock time and date at job start Tue Mar 31 2020 18:52:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34227 * 116.99838 * 2 1 4 4 O 1.20819 * 120.00351 * 0.02562 * 3 2 1 5 5 C 1.50702 * 119.99618 * 180.02562 * 3 2 1 6 6 H 1.09003 * 109.46945 * 300.00079 * 5 3 2 7 7 N 1.46905 * 109.46876 * 180.02562 * 5 3 2 8 8 C 1.46901 * 110.99870 * 85.00155 * 7 5 3 9 9 C 1.53004 * 109.46916 * 180.02562 * 8 7 5 10 10 C 1.52999 * 109.46923 * 299.99733 * 9 8 7 11 11 C 1.52999 * 109.46998 * 59.99872 * 9 8 7 12 12 C 1.50703 * 109.46807 * 179.97438 * 9 8 7 13 13 H 1.07995 * 120.00107 * 359.97438 * 12 9 8 14 14 C 1.37878 * 119.99714 * 179.97438 * 12 9 8 15 15 N 1.31510 * 119.99944 * 0.02562 * 14 12 9 16 16 Si 1.86799 * 119.99765 * 179.97438 * 14 12 9 17 17 H 1.48499 * 109.47110 * 90.00207 * 16 14 12 18 18 H 1.48501 * 109.47137 * 210.00199 * 16 14 12 19 19 H 1.48496 * 109.47323 * 330.00240 * 16 14 12 20 20 C 1.50702 * 109.47188 * 60.00222 * 5 3 2 21 21 C 1.38390 * 119.92091 * 79.72428 * 20 5 3 22 22 C 1.38347 * 120.29958 * 179.76595 * 21 20 5 23 23 C 1.37970 * 120.15131 * 0.50726 * 22 21 20 24 24 C 1.39614 * 119.84286 * 359.74933 * 23 22 21 25 25 C 1.47727 * 120.14376 * 180.02562 * 24 23 22 26 26 O 1.21470 * 119.99472 * 179.97438 * 25 24 23 27 27 O 1.34706 * 120.00568 * 359.97270 * 25 24 23 28 28 C 1.37925 * 119.92388 * 259.99832 * 20 5 3 29 29 H 1.08998 * 109.47307 * 59.99911 * 1 2 3 30 30 H 1.09004 * 109.46968 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47423 * 299.99680 * 1 2 3 32 32 H 1.00901 * 110.99869 * 321.04866 * 7 5 3 33 33 H 1.09004 * 109.47031 * 299.99620 * 8 7 5 34 34 H 1.08995 * 109.47111 * 59.99900 * 8 7 5 35 35 H 1.09002 * 109.47301 * 60.00027 * 10 9 8 36 36 H 1.09001 * 109.47017 * 180.02562 * 10 9 8 37 37 H 1.09005 * 109.47249 * 300.00302 * 10 9 8 38 38 H 1.09001 * 109.46999 * 60.00126 * 11 9 8 39 39 H 1.09001 * 109.46478 * 179.97438 * 11 9 8 40 40 H 1.08993 * 109.47197 * 299.99817 * 11 9 8 41 41 H 0.97007 * 120.00038 * 179.97438 * 15 14 12 42 42 H 1.07998 * 119.85350 * 0.02562 * 21 20 5 43 43 H 1.07999 * 119.92810 * 180.25976 * 22 21 20 44 44 H 1.07991 * 120.07700 * 179.72201 * 23 22 21 45 45 H 0.96698 * 117.00025 * 180.02562 * 27 25 24 46 46 H 1.07991 * 120.07456 * 359.97438 * 28 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5663 1.2748 -0.0006 6 1 3.9564 0.7805 0.8892 7 7 3.9828 2.6836 0.0002 8 6 4.0181 3.2214 1.3667 9 6 4.4545 4.6873 1.3268 10 6 5.8480 4.7877 0.7031 11 6 3.4607 5.4925 0.4872 12 6 4.4900 5.2392 2.7286 13 1 4.2272 4.6077 3.5644 14 6 4.8581 6.5503 2.9442 15 7 5.1777 7.3194 1.9264 16 14 4.9015 7.2346 4.6818 17 1 6.2504 7.0204 5.2646 18 1 4.6017 8.6887 4.6488 19 1 3.8868 6.5388 5.5133 20 6 4.1046 0.5919 -1.2314 21 6 4.0979 1.2538 -2.4468 22 6 4.5946 0.6362 -3.5807 23 6 5.0908 -0.6492 -3.5087 24 6 5.0957 -1.3246 -2.2869 25 6 5.6259 -2.7009 -2.2021 26 8 5.6292 -3.2858 -1.1375 27 8 6.1056 -3.3071 -3.3052 28 6 4.5977 -0.6933 -1.1452 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 3.3826 3.2384 -0.5914 33 1 3.0252 3.1503 1.8109 34 1 4.7257 2.6474 1.9649 35 1 5.8219 4.3886 -0.3109 36 1 6.1591 5.8320 0.6750 37 1 6.5560 4.2139 1.3012 38 1 2.4680 5.4210 0.9316 39 1 3.7715 6.5369 0.4591 40 1 3.4346 5.0935 -0.5267 41 1 5.4363 8.2420 2.0780 42 1 3.7070 2.2586 -2.5095 43 1 4.5903 1.1598 -4.5252 44 1 5.4741 -1.1318 -4.3955 45 1 6.4415 -4.2078 -3.2003 46 1 4.5986 -1.2101 -0.1969 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001598708879.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:52:55 Heat of formation + Delta-G solvation = -166.607514 kcal Electronic energy + Delta-G solvation = -29396.806355 eV Core-core repulsion = 25250.835226 eV Total energy + Delta-G solvation = -4145.971129 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.99708 -41.30315 -39.82021 -38.69647 -37.55334 -37.06049 -35.88377 -33.58530 -32.26353 -31.72013 -29.31068 -27.52329 -27.42532 -27.21952 -25.90049 -24.97194 -23.37978 -22.45559 -21.38643 -20.43287 -19.15748 -18.86319 -18.52754 -18.13381 -17.75072 -17.38308 -16.94550 -16.72863 -16.62395 -16.22241 -15.93057 -15.27415 -15.22117 -14.81877 -14.55827 -14.38911 -14.27451 -14.17966 -13.91905 -13.68379 -13.39243 -13.12200 -13.03538 -12.93392 -12.67261 -12.56468 -12.54837 -12.53522 -12.19159 -12.13355 -12.07590 -11.88745 -11.86268 -11.65577 -11.34587 -11.02288 -10.62856 -10.34859 -10.04513 -9.87907 -9.57753 -7.97144 -6.13641 -0.31199 0.26552 1.00251 1.41991 1.43988 1.49985 1.52138 1.69947 2.06535 2.45904 2.72309 3.17634 3.25294 3.48755 3.79104 3.82506 3.99755 4.12248 4.15441 4.25055 4.26947 4.32578 4.48544 4.55992 4.59231 4.64360 4.82397 4.84759 4.92460 4.99573 5.14550 5.23364 5.24753 5.27302 5.38881 5.40492 5.43741 5.53567 5.59868 5.69599 5.76627 5.81685 5.89446 6.13823 6.26239 6.37428 6.51513 6.58850 6.94228 6.99268 7.53588 9.01225 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.013879 B = 0.003012 C = 0.002779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2017.006586 B = 9295.097121 C =10072.907311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.357 6.357 3 C 0.440 3.560 4 O -0.528 6.528 5 C 0.135 3.865 6 H 0.130 0.870 7 N -0.643 5.643 8 C 0.084 3.916 9 C 0.064 3.936 10 C -0.106 4.106 11 C -0.117 4.117 12 C -0.528 4.528 13 H 0.044 0.956 14 C 0.024 3.976 15 N -0.902 5.902 16 Si 0.944 3.056 17 H -0.277 1.277 18 H -0.285 1.285 19 H -0.275 1.275 20 C -0.087 4.087 21 C -0.063 4.063 22 C -0.127 4.127 23 C -0.047 4.047 24 C -0.145 4.145 25 C 0.536 3.464 26 O -0.549 6.549 27 O -0.501 6.501 28 C -0.041 4.041 29 H 0.062 0.938 30 H 0.133 0.867 31 H 0.056 0.944 32 H 0.349 0.651 33 H 0.008 0.992 34 H 0.063 0.937 35 H 0.037 0.963 36 H 0.049 0.951 37 H 0.014 0.986 38 H 0.008 0.992 39 H 0.058 0.942 40 H 0.031 0.969 41 H 0.258 0.742 42 H 0.128 0.872 43 H 0.163 0.837 44 H 0.164 0.836 45 H 0.434 0.566 46 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.938 -19.998 -13.979 24.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.272 6.272 3 C 0.281 3.719 4 O -0.417 6.417 5 C 0.023 3.977 6 H 0.148 0.852 7 N -0.276 5.276 8 C -0.045 4.045 9 C 0.064 3.936 10 C -0.164 4.164 11 C -0.175 4.175 12 C -0.567 4.567 13 H 0.062 0.938 14 C -0.175 4.175 15 N -0.541 5.541 16 Si 0.771 3.229 17 H -0.203 1.203 18 H -0.211 1.211 19 H -0.200 1.200 20 C -0.088 4.088 21 C -0.082 4.082 22 C -0.145 4.145 23 C -0.065 4.065 24 C -0.146 4.146 25 C 0.382 3.618 26 O -0.442 6.442 27 O -0.315 6.315 28 C -0.059 4.059 29 H 0.081 0.919 30 H 0.151 0.849 31 H 0.075 0.925 32 H 0.171 0.829 33 H 0.026 0.974 34 H 0.082 0.918 35 H 0.056 0.944 36 H 0.068 0.932 37 H 0.034 0.966 38 H 0.028 0.972 39 H 0.077 0.923 40 H 0.049 0.951 41 H 0.067 0.933 42 H 0.146 0.854 43 H 0.180 0.820 44 H 0.182 0.818 45 H 0.296 0.704 46 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -2.596 -19.425 -13.798 23.968 hybrid contribution -1.060 0.378 1.708 2.045 sum -3.655 -19.047 -12.090 22.854 Atomic orbital electron populations 1.23551 0.75138 1.05668 1.02362 1.86550 1.24798 1.32563 1.83296 1.25325 0.93597 0.81643 0.71326 1.90700 1.67316 1.37320 1.46358 1.20411 0.84451 0.93034 0.99827 0.85211 1.61037 1.54310 0.99791 1.12447 1.22008 0.97562 0.97464 0.87442 1.18091 0.92802 0.88995 0.93726 1.21480 0.97086 1.00613 0.97204 1.21637 0.96912 1.02598 0.96392 1.21413 1.45528 0.96591 0.93158 0.93758 1.25504 0.95029 0.97291 0.99700 1.69955 1.46381 1.07030 1.30693 0.85785 0.78231 0.77418 0.81507 1.20303 1.21073 1.20046 1.19094 1.02147 0.93986 0.93574 1.21461 0.95159 0.99585 0.91978 1.21453 0.98652 0.95018 0.99344 1.21751 0.93887 0.94012 0.96814 1.19028 1.07555 0.92128 0.95907 1.20843 0.73443 0.86557 0.80959 1.90891 1.55030 1.66808 1.31428 1.84495 1.73479 1.36536 1.36969 1.21032 0.93377 0.93030 0.98506 0.91873 0.84869 0.92468 0.82861 0.97380 0.91850 0.94360 0.93188 0.96648 0.97233 0.92314 0.95051 0.93267 0.85383 0.81988 0.81838 0.70412 0.84663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.51 10.56 113.37 1.20 1.71 16 2 O -0.36 -9.18 10.48 -51.39 -0.54 -9.72 16 3 C 0.44 13.25 7.06 71.24 0.50 13.75 16 4 O -0.53 -19.15 15.05 21.99 0.33 -18.81 16 5 C 0.14 3.87 2.70 43.42 0.12 3.99 16 6 H 0.13 3.50 7.65 -2.39 -0.02 3.49 16 7 N -0.64 -21.98 4.77 -499.33 -2.38 -24.36 16 8 C 0.08 3.47 4.28 86.30 0.37 3.84 16 9 C 0.06 3.12 0.57 -52.93 -0.03 3.09 16 10 C -0.11 -5.06 8.09 71.98 0.58 -4.48 16 11 C -0.12 -5.70 7.92 71.98 0.57 -5.13 16 12 C -0.53 -28.80 8.01 25.60 0.21 -28.59 16 13 H 0.04 2.42 7.74 -2.91 -0.02 2.40 16 14 C 0.02 1.31 5.15 84.66 0.44 1.75 16 15 N -0.90 -50.42 9.35 21.45 0.20 -50.22 16 16 Si 0.94 43.76 29.54 68.60 2.03 45.79 16 17 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 18 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 19 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 20 C -0.09 -2.14 4.87 -19.90 -0.10 -2.23 16 21 C -0.06 -1.39 9.31 22.33 0.21 -1.18 16 22 C -0.13 -2.06 10.03 22.23 0.22 -1.84 16 23 C -0.05 -0.73 9.62 22.54 0.22 -0.51 16 24 C -0.15 -2.93 5.87 -20.10 -0.12 -3.05 16 25 C 0.54 10.62 8.27 70.33 0.58 11.20 16 26 O -0.55 -14.51 17.13 19.93 0.34 -14.17 16 27 O -0.50 -5.95 12.68 -56.15 -0.71 -6.66 16 28 C -0.04 -0.94 9.21 22.54 0.21 -0.74 16 29 H 0.06 1.21 8.13 -2.39 -0.02 1.19 16 30 H 0.13 1.62 8.14 -2.39 -0.02 1.61 16 31 H 0.06 1.18 8.13 -2.39 -0.02 1.16 16 32 H 0.35 12.37 5.13 -89.69 -0.46 11.91 16 33 H 0.01 0.35 7.62 -2.39 -0.02 0.33 16 34 H 0.06 2.58 8.05 -2.39 -0.02 2.56 16 35 H 0.04 1.64 7.60 -2.39 -0.02 1.62 16 36 H 0.05 2.65 6.07 -2.39 -0.01 2.63 16 37 H 0.01 0.70 8.14 -2.38 -0.02 0.68 16 38 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 39 H 0.06 3.14 6.07 -2.39 -0.01 3.13 16 40 H 0.03 1.33 6.57 -2.39 -0.02 1.32 16 41 H 0.26 13.87 8.31 -92.70 -0.77 13.10 16 42 H 0.13 2.88 7.24 -2.91 -0.02 2.85 16 43 H 0.16 1.68 8.06 -2.91 -0.02 1.65 16 44 H 0.16 1.67 7.61 -2.92 -0.02 1.65 16 45 H 0.43 1.31 9.11 -74.06 -0.67 0.64 16 46 H 0.14 3.17 7.63 -2.92 -0.02 3.15 16 Total: -1.00 -69.55 383.03 4.33 -65.23 By element: Atomic # 1 Polarization: 21.47 SS G_CDS: -0.11 Total: 21.35 kcal Atomic # 6 Polarization: -13.59 SS G_CDS: 5.17 Total: -8.42 kcal Atomic # 7 Polarization: -72.40 SS G_CDS: -2.18 Total: -74.58 kcal Atomic # 8 Polarization: -48.79 SS G_CDS: -0.58 Total: -49.37 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 2.03 Total: 45.79 kcal Total: -69.55 4.33 -65.23 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001598708879.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.382 kcal (2) G-P(sol) polarization free energy of solvation -69.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds