Wall clock time and date at job start Tue Mar 31 2020 18:52:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34707 * 117.00100 * 2 1 4 4 O 1.21469 * 119.99977 * 359.97438 * 3 2 1 5 5 C 1.47724 * 120.00076 * 180.02562 * 3 2 1 6 6 C 1.39651 * 120.14984 * 359.97438 * 5 3 2 7 7 C 1.37921 * 119.84746 * 180.02562 * 6 5 3 8 8 C 1.38387 * 120.15064 * 0.02562 * 7 6 5 9 9 C 1.38345 * 120.30641 * 359.97438 * 8 7 6 10 10 C 1.50697 * 119.92989 * 179.97438 * 9 8 7 11 11 H 1.08995 * 109.47618 * 159.99567 * 10 9 8 12 12 N 1.46903 * 109.47082 * 39.98923 * 10 9 8 13 13 C 1.46898 * 110.99673 * 155.00305 * 12 10 9 14 14 C 1.53006 * 109.47006 * 180.02562 * 13 12 10 15 15 C 1.52999 * 109.46626 * 299.99747 * 14 13 12 16 16 C 1.52997 * 109.47164 * 60.00045 * 14 13 12 17 17 C 1.50698 * 109.47184 * 180.02562 * 14 13 12 18 18 H 1.08005 * 119.99819 * 359.97438 * 17 14 13 19 19 C 1.37875 * 120.00046 * 180.02562 * 17 14 13 20 20 N 1.31511 * 120.00192 * 359.97438 * 19 17 14 21 21 Si 1.86798 * 119.99979 * 179.97438 * 19 17 14 22 22 H 1.48507 * 109.47309 * 359.97438 * 21 19 17 23 23 H 1.48497 * 109.47510 * 119.99847 * 21 19 17 24 24 H 1.48506 * 109.47246 * 239.99882 * 21 19 17 25 25 C 1.50706 * 109.46772 * 279.99493 * 10 9 8 26 26 O 1.20829 * 119.99711 * 119.99769 * 25 10 9 27 27 O 1.34221 * 119.99769 * 299.99853 * 25 10 9 28 28 C 1.37968 * 120.14875 * 0.26069 * 9 8 7 29 29 H 1.09002 * 109.47333 * 60.00403 * 1 2 3 30 30 H 1.09007 * 109.46849 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47099 * 300.00068 * 1 2 3 32 32 H 1.07998 * 120.07364 * 0.02562 * 6 5 3 33 33 H 1.08000 * 119.92621 * 180.02562 * 7 6 5 34 34 H 1.07999 * 119.84859 * 179.97438 * 8 7 6 35 35 H 1.00897 * 110.99542 * 31.05446 * 12 10 9 36 36 H 1.09001 * 109.47392 * 60.00807 * 13 12 10 37 37 H 1.09001 * 109.47520 * 300.00529 * 13 12 10 38 38 H 1.09000 * 109.47160 * 60.00369 * 15 14 13 39 39 H 1.09002 * 109.46719 * 180.02562 * 15 14 13 40 40 H 1.08993 * 109.47839 * 299.99931 * 15 14 13 41 41 H 1.09001 * 109.47375 * 59.99966 * 16 14 13 42 42 H 1.09002 * 109.46777 * 180.02562 * 16 14 13 43 43 H 1.09000 * 109.47140 * 299.99948 * 16 14 13 44 44 H 0.96996 * 120.00505 * 179.97438 * 20 19 17 45 45 H 0.96709 * 116.99994 * 180.02562 * 27 25 10 46 46 H 1.07995 * 120.07749 * 179.72730 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2002 0.0000 4 8 1.4020 2.2190 -0.0005 5 6 3.5388 1.2775 -0.0006 6 6 4.3025 0.1083 -0.0006 7 6 5.6794 0.1878 -0.0006 8 6 6.3044 1.4225 0.0000 9 6 5.5540 2.5848 0.0000 10 6 6.2435 3.9248 0.0011 11 1 5.5514 4.6898 -0.3505 12 7 7.4117 3.8752 -0.8881 13 6 7.7531 5.2152 -1.3838 14 6 8.9714 5.1231 -2.3049 15 6 10.1572 4.5499 -1.5262 16 6 8.6482 4.2085 -3.4882 17 6 9.3221 6.4978 -2.8130 18 1 8.7345 7.3517 -2.5097 19 6 10.3923 6.6652 -3.6660 20 7 11.1075 5.6254 -4.0357 21 14 10.8266 8.3692 -4.2963 22 1 9.8742 9.3617 -3.7366 23 1 12.2078 8.7158 -3.8752 24 1 10.7425 8.3848 -5.7789 25 6 6.6915 4.2579 1.4010 26 8 7.8637 4.4357 1.6338 27 8 5.7883 4.3570 2.3889 28 6 4.1759 2.5199 0.0049 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 3.8159 -0.8558 -0.0006 33 1 6.2712 -0.7156 -0.0010 34 1 7.3829 1.4790 0.0004 35 1 7.2571 3.2353 -1.6527 36 1 7.9831 5.8668 -0.5409 37 1 6.9085 5.6234 -1.9388 38 1 9.9038 3.5556 -1.1584 39 1 11.0252 4.4847 -2.1823 40 1 10.3875 5.2014 -0.6833 41 1 7.8034 4.6169 -4.0429 42 1 9.5163 4.1426 -4.1441 43 1 8.3949 3.2143 -3.1203 44 1 11.8602 5.7431 -4.6360 45 1 6.1234 4.5730 3.2700 46 1 3.5913 3.4279 0.0093 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001598999648.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:52:52 Heat of formation + Delta-G solvation = -143.047979 kcal Electronic energy + Delta-G solvation = -29112.885992 eV Core-core repulsion = 24967.936481 eV Total energy + Delta-G solvation = -4144.949511 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.90976 -40.26627 -38.98125 -37.03410 -36.66513 -35.78785 -34.49054 -31.96995 -31.55170 -30.28958 -28.09129 -26.91680 -25.57513 -25.21290 -24.44868 -23.74487 -22.51905 -21.47212 -20.41049 -18.67304 -18.22552 -17.65353 -17.35783 -16.64221 -16.45960 -16.21210 -15.94753 -15.69866 -15.16674 -14.91617 -14.45841 -14.23653 -13.90721 -13.83650 -13.66206 -13.45330 -12.96277 -12.74579 -12.53126 -12.48603 -12.30944 -11.98633 -11.84571 -11.44220 -11.26836 -11.12472 -11.09877 -11.04011 -10.79669 -10.63273 -10.57615 -10.41755 -10.19176 -10.03815 -9.38910 -9.26975 -9.23105 -8.99687 -8.62472 -8.29493 -7.98285 -5.90867 -4.00911 0.45644 1.02529 2.27021 2.34043 2.47626 3.06743 3.31286 3.39699 3.43224 3.53624 4.32413 4.38908 4.44876 4.55296 4.74299 4.77095 4.85474 4.88983 5.05911 5.14380 5.18108 5.29255 5.35043 5.45872 5.54819 5.66157 5.94846 6.00450 6.14971 6.20480 6.25896 6.31167 6.55852 6.64345 6.69396 6.85647 7.02437 7.16941 7.31771 7.43192 7.45138 7.60536 7.74828 7.77264 7.83759 8.14360 8.22104 8.34250 8.55487 9.00016 9.63979 11.09813 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.016890 B = 0.002651 C = 0.002561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1657.432043 B =10558.461120 C =10928.579728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.356 6.356 3 C 0.511 3.489 4 O -0.505 6.505 5 C -0.134 4.134 6 C -0.057 4.057 7 C -0.134 4.134 8 C -0.055 4.055 9 C -0.102 4.102 10 C 0.140 3.860 11 H 0.088 0.912 12 N -0.661 5.661 13 C 0.074 3.926 14 C 0.072 3.928 15 C -0.117 4.117 16 C -0.134 4.134 17 C -0.505 4.505 18 H 0.052 0.948 19 C 0.065 3.935 20 N -0.884 5.884 21 Si 0.888 3.112 22 H -0.275 1.275 23 H -0.285 1.285 24 H -0.286 1.286 25 C 0.478 3.522 26 O -0.476 6.476 27 O -0.523 6.523 28 C -0.031 4.031 29 H 0.064 0.936 30 H 0.102 0.898 31 H 0.063 0.937 32 H 0.138 0.862 33 H 0.136 0.864 34 H 0.145 0.855 35 H 0.353 0.647 36 H 0.062 0.938 37 H 0.019 0.981 38 H 0.020 0.980 39 H 0.073 0.927 40 H 0.020 0.980 41 H 0.020 0.980 42 H 0.085 0.915 43 H 0.010 0.990 44 H 0.257 0.743 45 H 0.406 0.594 46 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.218 -13.631 9.625 23.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.273 6.273 3 C 0.356 3.644 4 O -0.393 6.393 5 C -0.135 4.135 6 C -0.075 4.075 7 C -0.151 4.151 8 C -0.073 4.073 9 C -0.102 4.102 10 C 0.029 3.971 11 H 0.105 0.895 12 N -0.297 5.297 13 C -0.054 4.054 14 C 0.071 3.929 15 C -0.174 4.174 16 C -0.191 4.191 17 C -0.544 4.544 18 H 0.070 0.930 19 C -0.136 4.136 20 N -0.523 5.523 21 Si 0.717 3.283 22 H -0.200 1.200 23 H -0.211 1.211 24 H -0.212 1.212 25 C 0.317 3.683 26 O -0.360 6.360 27 O -0.335 6.335 28 C -0.049 4.049 29 H 0.083 0.917 30 H 0.121 0.879 31 H 0.082 0.918 32 H 0.156 0.844 33 H 0.154 0.846 34 H 0.163 0.837 35 H 0.176 0.824 36 H 0.080 0.920 37 H 0.037 0.963 38 H 0.039 0.961 39 H 0.091 0.909 40 H 0.039 0.961 41 H 0.039 0.961 42 H 0.104 0.896 43 H 0.029 0.971 44 H 0.068 0.932 45 H 0.264 0.736 46 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -16.638 -13.395 9.678 23.450 hybrid contribution -0.450 1.384 -0.390 1.507 sum -17.087 -12.011 9.289 22.859 Atomic orbital electron populations 1.23291 0.75885 1.03779 1.02741 1.86533 1.23625 1.32678 1.84424 1.21208 0.89125 0.81429 0.72627 1.90847 1.66776 1.35997 1.45727 1.18956 0.88821 0.94871 1.10841 1.21496 0.94022 0.97774 0.94238 1.21200 0.94196 0.98166 1.01586 1.21560 1.01702 0.91321 0.92712 1.19486 0.92786 0.94244 1.03698 1.19781 0.93147 0.94634 0.89579 0.89496 1.60263 1.33088 1.13460 1.22912 1.22336 0.98671 0.86307 0.98082 1.18075 0.89669 0.94914 0.90227 1.21610 1.00885 0.96639 0.98314 1.21859 1.01440 0.95296 1.00544 1.21114 1.13155 0.92647 1.27485 0.92953 1.24871 0.96099 0.96395 0.96194 1.69837 1.19055 1.28608 1.34790 0.86599 0.78263 0.84977 0.78473 1.19972 1.21110 1.21186 1.23336 0.84049 0.73722 0.87241 1.90761 1.18736 1.43581 1.82899 1.84531 1.43825 1.83472 1.21681 1.21112 0.93558 0.97077 0.93182 0.91732 0.87934 0.91779 0.84425 0.84648 0.83716 0.82366 0.91956 0.96286 0.96134 0.90853 0.96079 0.96097 0.89647 0.97135 0.93240 0.73625 0.84204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.24 10.56 101.05 1.07 1.31 16 2 O -0.36 -3.40 9.82 -40.51 -0.40 -3.79 16 3 C 0.51 5.96 7.90 34.61 0.27 6.24 16 4 O -0.50 -7.11 16.14 -19.24 -0.31 -7.42 16 5 C -0.13 -1.48 5.87 -104.98 -0.62 -2.10 16 6 C -0.06 -0.52 9.62 -39.17 -0.38 -0.90 16 7 C -0.13 -1.23 10.03 -39.64 -0.40 -1.62 16 8 C -0.05 -0.62 9.00 -39.49 -0.36 -0.97 16 9 C -0.10 -1.25 4.63 -104.68 -0.48 -1.73 16 10 C 0.14 2.01 2.72 -70.01 -0.19 1.82 16 11 H 0.09 1.19 7.66 -51.93 -0.40 0.79 16 12 N -0.66 -11.27 4.43 -109.18 -0.48 -11.75 16 13 C 0.07 1.51 4.28 -3.82 -0.02 1.50 16 14 C 0.07 1.72 0.57 -155.66 -0.09 1.63 16 15 C -0.12 -2.88 8.09 37.16 0.30 -2.58 16 16 C -0.13 -3.06 7.92 37.16 0.29 -2.77 16 17 C -0.51 -13.58 8.01 -34.44 -0.28 -13.85 16 18 H 0.05 1.41 7.74 -52.48 -0.41 1.01 16 19 C 0.07 1.77 5.15 -17.82 -0.09 1.68 16 20 N -0.88 -24.40 9.35 55.43 0.52 -23.88 16 21 Si 0.89 21.20 29.54 -169.99 -5.02 16.18 16 22 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 23 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 24 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 25 C 0.48 7.22 7.49 36.01 0.27 7.49 16 26 O -0.48 -8.97 16.68 -18.75 -0.31 -9.29 16 27 O -0.52 -6.15 13.34 -39.23 -0.52 -6.67 16 28 C -0.03 -0.36 9.21 -39.17 -0.36 -0.72 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.14 0.98 7.61 -52.49 -0.40 0.58 16 33 H 0.14 0.92 8.06 -52.49 -0.42 0.49 16 34 H 0.15 1.73 7.71 -52.49 -0.40 1.32 16 35 H 0.35 5.73 6.03 -39.29 -0.24 5.49 16 36 H 0.06 1.38 7.62 -51.93 -0.40 0.98 16 37 H 0.02 0.38 8.06 -51.93 -0.42 -0.04 16 38 H 0.02 0.46 7.60 -51.93 -0.39 0.06 16 39 H 0.07 1.97 6.07 -51.93 -0.32 1.66 16 40 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.08 2.19 6.07 -51.93 -0.32 1.88 16 43 H 0.01 0.20 6.57 -51.93 -0.34 -0.14 16 44 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 45 H 0.41 3.08 9.10 45.56 0.41 3.50 16 46 H 0.14 1.65 7.63 -52.49 -0.40 1.25 16 LS Contribution 384.21 15.07 5.79 5.79 Total: -1.00 -32.47 384.21 -7.47 -39.94 By element: Atomic # 1 Polarization: 12.16 SS G_CDS: -5.68 Total: 6.48 kcal Atomic # 6 Polarization: -4.54 SS G_CDS: -1.05 Total: -5.59 kcal Atomic # 7 Polarization: -35.67 SS G_CDS: 0.03 Total: -35.64 kcal Atomic # 8 Polarization: -25.62 SS G_CDS: -1.54 Total: -27.17 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -32.47 -7.47 -39.94 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001598999648.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.106 kcal (2) G-P(sol) polarization free energy of solvation -32.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.942 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds