Wall clock time and date at job start Tue Mar 31 2020 18:52:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34707 * 117.00100 * 2 1 4 4 O 1.21469 * 119.99977 * 359.97438 * 3 2 1 5 5 C 1.47724 * 120.00076 * 180.02562 * 3 2 1 6 6 C 1.39651 * 120.14984 * 359.97438 * 5 3 2 7 7 C 1.37921 * 119.84746 * 180.02562 * 6 5 3 8 8 C 1.38387 * 120.15064 * 0.02562 * 7 6 5 9 9 C 1.38345 * 120.30641 * 359.97438 * 8 7 6 10 10 C 1.50697 * 119.92989 * 179.97438 * 9 8 7 11 11 H 1.08995 * 109.47618 * 159.99567 * 10 9 8 12 12 N 1.46903 * 109.47082 * 39.98923 * 10 9 8 13 13 C 1.46898 * 110.99673 * 155.00305 * 12 10 9 14 14 C 1.53006 * 109.47006 * 180.02562 * 13 12 10 15 15 C 1.52999 * 109.46626 * 299.99747 * 14 13 12 16 16 C 1.52997 * 109.47164 * 60.00045 * 14 13 12 17 17 C 1.50698 * 109.47184 * 180.02562 * 14 13 12 18 18 H 1.08005 * 119.99819 * 359.97438 * 17 14 13 19 19 C 1.37875 * 120.00046 * 180.02562 * 17 14 13 20 20 N 1.31511 * 120.00192 * 359.97438 * 19 17 14 21 21 Si 1.86798 * 119.99979 * 179.97438 * 19 17 14 22 22 H 1.48507 * 109.47309 * 359.97438 * 21 19 17 23 23 H 1.48497 * 109.47510 * 119.99847 * 21 19 17 24 24 H 1.48506 * 109.47246 * 239.99882 * 21 19 17 25 25 C 1.50706 * 109.46772 * 279.99493 * 10 9 8 26 26 O 1.20829 * 119.99711 * 119.99769 * 25 10 9 27 27 O 1.34221 * 119.99769 * 299.99853 * 25 10 9 28 28 C 1.37968 * 120.14875 * 0.26069 * 9 8 7 29 29 H 1.09002 * 109.47333 * 60.00403 * 1 2 3 30 30 H 1.09007 * 109.46849 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47099 * 300.00068 * 1 2 3 32 32 H 1.07998 * 120.07364 * 0.02562 * 6 5 3 33 33 H 1.08000 * 119.92621 * 180.02562 * 7 6 5 34 34 H 1.07999 * 119.84859 * 179.97438 * 8 7 6 35 35 H 1.00897 * 110.99542 * 31.05446 * 12 10 9 36 36 H 1.09001 * 109.47392 * 60.00807 * 13 12 10 37 37 H 1.09001 * 109.47520 * 300.00529 * 13 12 10 38 38 H 1.09000 * 109.47160 * 60.00369 * 15 14 13 39 39 H 1.09002 * 109.46719 * 180.02562 * 15 14 13 40 40 H 1.08993 * 109.47839 * 299.99931 * 15 14 13 41 41 H 1.09001 * 109.47375 * 59.99966 * 16 14 13 42 42 H 1.09002 * 109.46777 * 180.02562 * 16 14 13 43 43 H 1.09000 * 109.47140 * 299.99948 * 16 14 13 44 44 H 0.96996 * 120.00505 * 179.97438 * 20 19 17 45 45 H 0.96709 * 116.99994 * 180.02562 * 27 25 10 46 46 H 1.07995 * 120.07749 * 179.72730 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2002 0.0000 4 8 1.4020 2.2190 -0.0005 5 6 3.5388 1.2775 -0.0006 6 6 4.3025 0.1083 -0.0006 7 6 5.6794 0.1878 -0.0006 8 6 6.3044 1.4225 0.0000 9 6 5.5540 2.5848 0.0000 10 6 6.2435 3.9248 0.0011 11 1 5.5514 4.6898 -0.3505 12 7 7.4117 3.8752 -0.8881 13 6 7.7531 5.2152 -1.3838 14 6 8.9714 5.1231 -2.3049 15 6 10.1572 4.5499 -1.5262 16 6 8.6482 4.2085 -3.4882 17 6 9.3221 6.4978 -2.8130 18 1 8.7345 7.3517 -2.5097 19 6 10.3923 6.6652 -3.6660 20 7 11.1075 5.6254 -4.0357 21 14 10.8266 8.3692 -4.2963 22 1 9.8742 9.3617 -3.7366 23 1 12.2078 8.7158 -3.8752 24 1 10.7425 8.3848 -5.7789 25 6 6.6915 4.2579 1.4010 26 8 7.8637 4.4357 1.6338 27 8 5.7883 4.3570 2.3889 28 6 4.1759 2.5199 0.0049 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 3.8159 -0.8558 -0.0006 33 1 6.2712 -0.7156 -0.0010 34 1 7.3829 1.4790 0.0004 35 1 7.2571 3.2353 -1.6527 36 1 7.9831 5.8668 -0.5409 37 1 6.9085 5.6234 -1.9388 38 1 9.9038 3.5556 -1.1584 39 1 11.0252 4.4847 -2.1823 40 1 10.3875 5.2014 -0.6833 41 1 7.8034 4.6169 -4.0429 42 1 9.5163 4.1426 -4.1441 43 1 8.3949 3.2143 -3.1203 44 1 11.8602 5.7431 -4.6360 45 1 6.1234 4.5730 3.2700 46 1 3.5913 3.4279 0.0093 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001598999648.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:52:52 Heat of formation + Delta-G solvation = -162.813618 kcal Electronic energy + Delta-G solvation = -29113.743095 eV Core-core repulsion = 24967.936481 eV Total energy + Delta-G solvation = -4145.806613 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.81925 -41.33269 -39.90435 -38.58375 -37.51363 -37.01576 -35.93940 -33.57596 -32.38613 -31.72394 -28.77471 -28.07475 -27.47980 -27.24723 -25.63885 -24.98226 -23.48242 -22.39092 -21.42146 -20.40076 -19.34885 -18.68077 -18.22340 -17.95313 -17.49401 -17.38629 -17.04834 -16.91673 -16.69110 -16.16408 -15.82895 -15.28765 -15.16625 -14.81962 -14.59556 -14.57503 -14.36744 -14.09898 -13.90837 -13.63377 -13.45482 -13.10537 -13.05635 -12.96379 -12.75233 -12.52927 -12.50552 -12.44998 -12.18426 -12.08341 -12.05841 -11.82603 -11.71425 -11.61052 -11.31773 -11.01095 -10.59277 -10.33928 -10.09908 -9.94217 -9.41096 -7.96559 -6.12747 -0.38561 0.19771 1.24683 1.40653 1.43294 1.44178 1.53248 1.63781 2.01252 2.46411 2.68556 3.25781 3.27664 3.41779 3.65451 3.83532 4.08210 4.13401 4.23066 4.32842 4.35085 4.37338 4.42429 4.53691 4.58823 4.68298 4.76906 4.87233 4.88698 5.01598 5.15766 5.19349 5.21152 5.30126 5.36933 5.39356 5.44259 5.55002 5.64701 5.70955 5.77562 5.79107 5.95316 6.20325 6.33595 6.43085 6.54621 6.62611 6.95606 7.08059 7.54367 9.01891 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.016890 B = 0.002651 C = 0.002561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1657.432043 B =10558.461120 C =10928.579728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.353 6.353 3 C 0.513 3.487 4 O -0.537 6.537 5 C -0.144 4.144 6 C -0.043 4.043 7 C -0.123 4.123 8 C -0.062 4.062 9 C -0.109 4.109 10 C 0.140 3.860 11 H 0.095 0.905 12 N -0.662 5.662 13 C 0.090 3.910 14 C 0.064 3.936 15 C -0.101 4.101 16 C -0.122 4.122 17 C -0.525 4.525 18 H 0.043 0.957 19 C 0.023 3.977 20 N -0.901 5.901 21 Si 0.943 3.057 22 H -0.274 1.274 23 H -0.285 1.285 24 H -0.280 1.280 25 C 0.485 3.515 26 O -0.520 6.520 27 O -0.512 6.512 28 C -0.037 4.037 29 H 0.061 0.939 30 H 0.137 0.863 31 H 0.062 0.938 32 H 0.165 0.835 33 H 0.166 0.834 34 H 0.137 0.863 35 H 0.359 0.641 36 H 0.041 0.959 37 H 0.022 0.978 38 H 0.035 0.965 39 H 0.049 0.951 40 H 0.001 0.999 41 H 0.021 0.979 42 H 0.057 0.943 43 H 0.038 0.962 44 H 0.257 0.743 45 H 0.425 0.575 46 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.719 -15.528 9.931 26.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.269 6.269 3 C 0.359 3.641 4 O -0.429 6.429 5 C -0.145 4.145 6 C -0.061 4.061 7 C -0.141 4.141 8 C -0.081 4.081 9 C -0.109 4.109 10 C 0.029 3.971 11 H 0.112 0.888 12 N -0.298 5.298 13 C -0.038 4.038 14 C 0.063 3.937 15 C -0.159 4.159 16 C -0.180 4.180 17 C -0.564 4.564 18 H 0.061 0.939 19 C -0.176 4.176 20 N -0.541 5.541 21 Si 0.770 3.230 22 H -0.198 1.198 23 H -0.211 1.211 24 H -0.206 1.206 25 C 0.326 3.674 26 O -0.408 6.408 27 O -0.325 6.325 28 C -0.055 4.055 29 H 0.080 0.920 30 H 0.155 0.845 31 H 0.081 0.919 32 H 0.182 0.818 33 H 0.183 0.817 34 H 0.155 0.845 35 H 0.183 0.817 36 H 0.060 0.940 37 H 0.040 0.960 38 H 0.054 0.946 39 H 0.068 0.932 40 H 0.020 0.980 41 H 0.040 0.960 42 H 0.076 0.924 43 H 0.056 0.944 44 H 0.067 0.933 45 H 0.286 0.714 46 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -18.170 -15.315 10.007 25.784 hybrid contribution -0.084 1.884 -0.404 1.928 sum -18.254 -13.432 9.603 24.613 Atomic orbital electron populations 1.23608 0.74200 1.06015 1.02602 1.86521 1.25252 1.31348 1.83792 1.21337 0.89346 0.81576 0.71825 1.90832 1.67481 1.37133 1.47434 1.19051 0.88848 0.95268 1.11328 1.21789 0.93942 0.98144 0.92239 1.21492 0.94388 0.98300 0.99896 1.21609 1.01371 0.91945 0.93137 1.19240 0.92838 0.93328 1.05507 1.19779 0.92224 0.96474 0.88662 0.88766 1.60064 1.35118 1.11482 1.23167 1.21924 0.97375 0.87938 0.96575 1.18100 0.90699 0.93778 0.91129 1.21428 1.00397 0.97033 0.97016 1.21671 1.00136 0.96611 0.99545 1.21433 1.13352 0.93858 1.27771 0.93904 1.25502 0.96187 0.99370 0.96543 1.69958 1.19185 1.29923 1.34999 0.85741 0.77754 0.81449 0.78035 1.19845 1.21094 1.20635 1.23430 0.83555 0.72470 0.87958 1.90751 1.20488 1.45834 1.83702 1.84484 1.42793 1.82718 1.22506 1.21047 0.93276 0.97490 0.93720 0.92009 0.84510 0.91883 0.81792 0.81661 0.84485 0.81747 0.93994 0.95962 0.94631 0.93246 0.98018 0.96005 0.92417 0.94362 0.93293 0.71353 0.84825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 10.56 113.37 1.20 1.51 16 2 O -0.35 -5.90 9.82 -56.17 -0.55 -6.45 16 3 C 0.51 11.21 7.90 70.33 0.56 11.76 16 4 O -0.54 -14.86 16.14 19.94 0.32 -14.54 16 5 C -0.14 -2.91 5.87 -20.10 -0.12 -3.03 16 6 C -0.04 -0.65 9.62 22.54 0.22 -0.43 16 7 C -0.12 -1.85 10.03 22.23 0.22 -1.63 16 8 C -0.06 -1.28 9.00 22.33 0.20 -1.08 16 9 C -0.11 -2.53 4.63 -19.90 -0.09 -2.62 16 10 C 0.14 3.94 2.72 43.42 0.12 4.06 16 11 H 0.09 2.53 7.66 -2.39 -0.02 2.51 16 12 N -0.66 -22.25 4.43 -499.34 -2.21 -24.47 16 13 C 0.09 3.74 4.28 86.31 0.37 4.11 16 14 C 0.06 3.06 0.57 -52.93 -0.03 3.03 16 15 C -0.10 -5.06 8.09 71.98 0.58 -4.48 16 16 C -0.12 -5.54 7.92 71.98 0.57 -4.97 16 17 C -0.53 -28.64 8.01 25.60 0.21 -28.43 16 18 H 0.04 2.35 7.74 -2.91 -0.02 2.33 16 19 C 0.02 1.26 5.15 84.65 0.44 1.70 16 20 N -0.90 -50.39 9.35 21.45 0.20 -50.18 16 21 Si 0.94 43.86 29.54 68.60 2.03 45.88 16 22 H -0.27 -12.56 7.11 99.48 0.71 -11.86 16 23 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 24 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 25 C 0.49 14.47 7.49 71.24 0.53 15.01 16 26 O -0.52 -19.77 16.68 21.96 0.37 -19.40 16 27 O -0.51 -11.43 13.34 -51.33 -0.68 -12.12 16 28 C -0.04 -0.83 9.21 22.54 0.21 -0.62 16 29 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.14 0.53 8.14 -2.38 -0.02 0.51 16 31 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.16 1.62 7.61 -2.91 -0.02 1.59 16 33 H 0.17 1.51 8.06 -2.91 -0.02 1.48 16 34 H 0.14 3.07 7.71 -2.91 -0.02 3.04 16 35 H 0.36 11.23 6.03 -89.70 -0.54 10.69 16 36 H 0.04 1.89 7.62 -2.39 -0.02 1.87 16 37 H 0.02 0.89 8.06 -2.39 -0.02 0.87 16 38 H 0.03 1.62 7.60 -2.39 -0.02 1.60 16 39 H 0.05 2.70 6.07 -2.39 -0.01 2.68 16 40 H 0.00 0.03 8.14 -2.39 -0.02 0.01 16 41 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 42 H 0.06 2.97 6.07 -2.39 -0.01 2.95 16 43 H 0.04 1.48 6.57 -2.39 -0.02 1.47 16 44 H 0.26 13.82 8.31 -92.71 -0.77 13.05 16 45 H 0.43 5.87 9.10 -74.05 -0.67 5.19 16 46 H 0.13 3.12 7.63 -2.91 -0.02 3.10 16 Total: -1.00 -70.91 384.21 4.45 -66.46 By element: Atomic # 1 Polarization: 21.14 SS G_CDS: -0.19 Total: 20.95 kcal Atomic # 6 Polarization: -11.30 SS G_CDS: 5.18 Total: -6.13 kcal Atomic # 7 Polarization: -72.64 SS G_CDS: -2.01 Total: -74.65 kcal Atomic # 8 Polarization: -51.96 SS G_CDS: -0.55 Total: -52.51 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 2.03 Total: 45.88 kcal Total: -70.91 4.45 -66.46 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001598999648.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.358 kcal (2) G-P(sol) polarization free energy of solvation -70.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.456 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds