Wall clock time and date at job start Tue Mar 31 2020 18:16:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35899 * 117.00145 * 2 1 4 4 C 1.38736 * 120.05931 * 179.97438 * 3 2 1 5 5 C 1.38139 * 119.94714 * 180.02562 * 4 3 2 6 6 C 1.38273 * 120.05191 * 0.02619 * 5 4 3 7 7 C 1.50702 * 119.94134 * 179.97438 * 6 5 4 8 8 C 1.53003 * 109.47006 * 54.06457 * 7 6 5 9 9 C 1.53002 * 109.47005 * 294.06507 * 7 6 5 10 10 C 1.50699 * 109.47224 * 174.06663 * 7 6 5 11 11 O 1.21288 * 120.00107 * 84.58100 * 10 7 6 12 12 N 1.34783 * 119.99892 * 264.31135 * 10 7 6 13 13 C 1.37094 * 119.99657 * 242.63759 * 12 10 7 14 14 H 1.07995 * 120.00021 * 198.10400 * 13 12 10 15 15 C 1.38952 * 120.00009 * 18.09951 * 13 12 10 16 16 N 1.31404 * 120.00411 * 13.62359 * 15 13 12 17 17 Si 1.86804 * 119.99897 * 193.62081 * 15 13 12 18 18 H 1.48499 * 109.47234 * 60.00183 * 17 15 13 19 19 H 1.48504 * 109.47106 * 180.02562 * 17 15 13 20 20 H 1.48508 * 109.47013 * 299.99993 * 17 15 13 21 21 C 1.46498 * 120.00121 * 62.63524 * 12 10 7 22 22 C 1.52993 * 109.47096 * 93.23286 * 21 12 10 23 23 C 1.50707 * 109.47310 * 184.98165 * 22 21 12 24 24 O 1.20833 * 119.99393 * 359.97438 * 23 22 21 25 25 O 1.34219 * 120.00229 * 179.97438 * 23 22 21 26 26 C 1.38257 * 120.11555 * 0.24819 * 6 5 4 27 27 C 1.38146 * 120.05374 * 359.45559 * 26 6 5 28 28 H 1.08996 * 109.47302 * 299.99552 * 1 2 3 29 29 H 1.08998 * 109.47322 * 60.00271 * 1 2 3 30 30 H 1.09004 * 109.47406 * 179.97438 * 1 2 3 31 31 H 1.07998 * 120.02487 * 0.02562 * 4 3 2 32 32 H 1.07993 * 119.97755 * 180.02562 * 5 4 3 33 33 H 1.09001 * 109.46769 * 174.14854 * 8 7 6 34 34 H 1.08998 * 109.47081 * 294.15042 * 8 7 6 35 35 H 1.08998 * 109.47383 * 54.15501 * 8 7 6 36 36 H 1.09000 * 109.47125 * 304.76685 * 9 7 6 37 37 H 1.08998 * 109.47139 * 64.77220 * 9 7 6 38 38 H 1.08999 * 109.46974 * 184.76500 * 9 7 6 39 39 H 0.96998 * 120.00809 * 184.98131 * 16 15 13 40 40 H 1.09004 * 109.46868 * 213.23189 * 21 12 10 41 41 H 1.09001 * 109.47063 * 333.22910 * 21 12 10 42 42 H 1.08997 * 109.46899 * 304.97889 * 22 21 12 43 43 H 1.08999 * 109.47417 * 64.98132 * 22 21 12 44 44 H 0.96704 * 117.00153 * 179.97438 * 25 23 22 45 45 H 1.07995 * 119.97574 * 179.70424 * 26 6 5 46 46 H 1.08004 * 120.03267 * 180.24840 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0459 1.2108 0.0000 4 6 3.4313 1.2849 0.0005 5 6 4.0561 2.5169 0.0011 6 6 3.3018 3.6758 0.0016 7 6 3.9860 5.0185 0.0028 8 6 4.9722 5.0894 -1.1648 9 6 4.7412 5.2050 1.3203 10 6 2.9549 6.1078 -0.1437 11 8 2.3716 6.5261 0.8340 12 7 2.6849 6.6210 -1.3604 13 6 2.9291 7.9457 -1.6151 14 1 2.4592 8.4289 -2.4590 15 6 3.7809 8.6669 -0.7874 16 7 4.5558 8.0372 0.0669 17 14 3.8247 10.5316 -0.8891 18 1 2.4781 11.0760 -0.5797 19 1 4.8089 11.0578 0.0905 20 1 4.2223 10.9434 -2.2594 21 6 2.1307 5.7631 -2.4107 22 6 0.6038 5.8569 -2.3928 23 6 0.0289 4.8837 -3.3896 24 8 0.7653 4.1869 -4.0472 25 8 -1.3008 4.7909 -3.5469 26 6 1.9211 3.6048 0.0068 27 6 1.2915 2.3752 0.0001 28 1 -0.3634 0.5137 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 4.0208 0.3800 0.0005 32 1 5.1344 2.5751 0.0011 33 1 5.3901 6.0942 -1.2269 34 1 5.7761 4.3707 -1.0056 35 1 4.4530 4.8539 -2.0938 36 1 4.0536 5.0704 2.1554 37 1 5.5424 4.4691 1.3871 38 1 5.1654 6.2083 1.3570 39 1 5.0969 8.5417 0.6942 40 1 2.5035 6.0903 -3.3813 41 1 2.4335 4.7310 -2.2342 42 1 0.2366 5.6149 -1.3955 43 1 0.2988 6.8696 -2.6565 44 1 -1.6223 4.1527 -4.1984 45 1 1.3342 4.5113 0.0121 46 1 0.2128 2.3201 0.0001 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001599505159.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:16:22 Heat of formation + Delta-G solvation = -120.548351 kcal Electronic energy + Delta-G solvation = -31135.679475 eV Core-core repulsion = 26991.705621 eV Total energy + Delta-G solvation = -4143.973854 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.34732 -39.94033 -39.05955 -37.11475 -36.02226 -34.75632 -33.82197 -32.36048 -30.85634 -30.01385 -28.88423 -27.14068 -26.25104 -25.19592 -24.26935 -22.72772 -22.29713 -21.02714 -20.29248 -18.64680 -18.09624 -17.89397 -16.87060 -16.32751 -15.95286 -15.76094 -15.65800 -15.26783 -14.99787 -14.47017 -14.34915 -14.10873 -13.65335 -13.42220 -13.16888 -12.96478 -12.85165 -12.73318 -12.39077 -12.07730 -11.90439 -11.83190 -11.53527 -11.37898 -11.21306 -11.16419 -10.99807 -10.92576 -10.74950 -10.64856 -10.61528 -10.52251 -10.34212 -10.20681 -10.06284 -9.90705 -9.06458 -8.70935 -8.32589 -7.77560 -7.36309 -6.18676 -3.63069 1.62294 1.72779 2.43890 3.21623 3.26558 3.35009 3.36754 3.36887 3.80033 4.05645 4.31129 4.87097 4.98144 5.08660 5.11565 5.18127 5.20998 5.34753 5.37714 5.40815 5.47954 5.64288 5.67241 5.78129 5.86661 5.91639 6.00130 6.06528 6.24973 6.30082 6.36728 6.48503 6.50347 6.56716 6.60775 6.67364 6.70546 6.84951 6.89367 7.00530 7.08827 7.31889 7.38569 7.55325 7.56814 8.07092 8.11620 9.00539 9.27414 9.51432 9.98698 10.95154 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.011626 B = 0.005110 C = 0.003916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2407.797059 B = 5478.310342 C = 7148.869063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.322 6.322 3 C 0.111 3.889 4 C -0.150 4.150 5 C -0.075 4.075 6 C -0.088 4.088 7 C -0.034 4.034 8 C -0.125 4.125 9 C -0.118 4.118 10 C 0.608 3.392 11 O -0.523 6.523 12 N -0.554 5.554 13 C -0.290 4.290 14 H 0.082 0.918 15 C 0.027 3.973 16 N -0.885 5.885 17 Si 0.919 3.081 18 H -0.280 1.280 19 H -0.287 1.287 20 H -0.280 1.280 21 C 0.145 3.855 22 C -0.135 4.135 23 C 0.481 3.519 24 O -0.517 6.517 25 O -0.522 6.522 26 C -0.080 4.080 27 C -0.203 4.203 28 H 0.053 0.947 29 H 0.053 0.947 30 H 0.095 0.905 31 H 0.126 0.874 32 H 0.129 0.871 33 H 0.090 0.910 34 H 0.036 0.964 35 H 0.048 0.952 36 H 0.046 0.954 37 H 0.038 0.962 38 H 0.090 0.910 39 H 0.269 0.731 40 H 0.069 0.931 41 H 0.067 0.933 42 H 0.099 0.901 43 H 0.109 0.891 44 H 0.402 0.598 45 H 0.125 0.875 46 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.543 -11.528 -2.503 13.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.236 6.236 3 C 0.066 3.934 4 C -0.169 4.169 5 C -0.093 4.093 6 C -0.089 4.089 7 C -0.038 4.038 8 C -0.182 4.182 9 C -0.175 4.175 10 C 0.399 3.601 11 O -0.396 6.396 12 N -0.283 5.283 13 C -0.417 4.417 14 H 0.100 0.900 15 C -0.175 4.175 16 N -0.527 5.527 17 Si 0.748 3.252 18 H -0.206 1.206 19 H -0.213 1.213 20 H -0.206 1.206 21 C 0.018 3.982 22 C -0.175 4.175 23 C 0.324 3.676 24 O -0.405 6.405 25 O -0.334 6.334 26 C -0.098 4.098 27 C -0.221 4.221 28 H 0.072 0.928 29 H 0.071 0.929 30 H 0.114 0.886 31 H 0.144 0.856 32 H 0.147 0.853 33 H 0.109 0.891 34 H 0.055 0.945 35 H 0.067 0.933 36 H 0.065 0.935 37 H 0.057 0.943 38 H 0.109 0.891 39 H 0.080 0.920 40 H 0.087 0.913 41 H 0.085 0.915 42 H 0.117 0.883 43 H 0.127 0.873 44 H 0.260 0.740 45 H 0.143 0.857 46 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -5.217 -11.319 -1.725 12.583 hybrid contribution -0.522 0.691 -0.485 0.993 sum -5.740 -10.628 -2.210 12.280 Atomic orbital electron populations 1.22983 0.78929 1.03389 1.01328 1.86016 1.20972 1.27323 1.89271 1.18951 0.92359 0.83784 0.98269 1.20323 0.91161 0.98353 1.07060 1.20786 0.99891 0.90679 0.97912 1.19931 0.93276 0.95207 1.00461 1.19797 0.96018 0.89808 0.98197 1.21812 0.97000 1.03573 0.95795 1.21672 0.98193 1.03413 0.94268 1.19153 0.79175 0.79277 0.82500 1.90422 1.48924 1.59133 1.41136 1.42615 1.68505 1.08603 1.08537 1.19183 1.23694 0.84591 1.14206 0.89972 1.24945 0.94617 0.99610 0.98302 1.69246 1.26122 1.35299 1.22077 0.86118 0.77683 0.83982 0.77462 1.20605 1.21308 1.20580 1.20810 0.88447 0.95468 0.93432 1.22165 0.99866 0.98270 0.97156 1.23856 0.79505 0.82107 0.82166 1.90701 1.60347 1.43454 1.45957 1.84603 1.25847 1.61835 1.61099 1.21082 0.94473 0.97159 0.97077 1.21126 0.99570 0.92319 1.09115 0.92804 0.92868 0.88631 0.85604 0.85323 0.89117 0.94470 0.93312 0.93535 0.94276 0.89079 0.92011 0.91301 0.91471 0.88319 0.87327 0.74030 0.85727 0.86042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 9.81 101.05 0.99 1.28 16 2 O -0.32 -4.46 10.50 -19.42 -0.20 -4.66 16 3 C 0.11 1.71 6.69 -39.21 -0.26 1.45 16 4 C -0.15 -2.26 9.99 -39.43 -0.39 -2.66 16 5 C -0.07 -1.19 8.86 -39.60 -0.35 -1.54 16 6 C -0.09 -1.62 4.05 -104.60 -0.42 -2.05 16 7 C -0.03 -0.69 0.44 -156.81 -0.07 -0.76 16 8 C -0.12 -2.46 7.41 37.16 0.28 -2.18 16 9 C -0.12 -2.40 7.84 37.16 0.29 -2.10 16 10 C 0.61 14.39 1.01 -10.98 -0.01 14.38 16 11 O -0.52 -14.15 16.20 5.55 0.09 -14.06 16 12 N -0.55 -12.75 1.86 -114.82 -0.21 -12.97 16 13 C -0.29 -7.27 9.65 -14.93 -0.14 -7.41 16 14 H 0.08 1.97 7.87 -52.49 -0.41 1.55 16 15 C 0.03 0.68 5.15 -17.47 -0.09 0.59 16 16 N -0.89 -23.13 8.06 55.50 0.45 -22.68 16 17 Si 0.92 20.68 29.58 -169.99 -5.03 15.65 16 18 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 19 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 20 H -0.28 -6.14 7.11 56.52 0.40 -5.73 16 21 C 0.14 2.82 3.44 -4.05 -0.01 2.80 16 22 C -0.13 -2.26 6.11 -27.88 -0.17 -2.43 16 23 C 0.48 7.35 8.33 36.01 0.30 7.65 16 24 O -0.52 -9.13 16.68 -18.76 -0.31 -9.44 16 25 O -0.52 -6.27 13.42 -39.23 -0.53 -6.80 16 26 C -0.08 -1.45 7.83 -39.61 -0.31 -1.76 16 27 C -0.20 -3.21 9.04 -39.43 -0.36 -3.57 16 28 H 0.05 0.50 7.66 -51.93 -0.40 0.10 16 29 H 0.05 0.50 7.66 -51.93 -0.40 0.11 16 30 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.13 1.61 8.06 -52.49 -0.42 1.19 16 32 H 0.13 1.82 7.25 -52.49 -0.38 1.44 16 33 H 0.09 2.05 6.98 -51.93 -0.36 1.68 16 34 H 0.04 0.63 7.30 -51.93 -0.38 0.25 16 35 H 0.05 0.95 6.15 -51.93 -0.32 0.63 16 36 H 0.05 0.97 8.01 -51.93 -0.42 0.55 16 37 H 0.04 0.67 7.94 -51.93 -0.41 0.26 16 38 H 0.09 2.05 6.35 -51.93 -0.33 1.72 16 39 H 0.27 6.93 8.32 -40.82 -0.34 6.59 16 40 H 0.07 1.34 8.07 -51.93 -0.42 0.92 16 41 H 0.07 1.32 4.83 -51.93 -0.25 1.07 16 42 H 0.10 1.69 7.01 -51.93 -0.36 1.32 16 43 H 0.11 1.77 8.14 -51.93 -0.42 1.35 16 44 H 0.40 2.95 9.10 45.56 0.41 3.36 16 45 H 0.12 2.46 4.85 -52.49 -0.25 2.21 16 46 H 0.12 1.65 6.30 -52.48 -0.33 1.32 16 LS Contribution 369.24 15.07 5.56 5.56 Total: -1.00 -31.38 369.24 -6.33 -37.71 By element: Atomic # 1 Polarization: 15.41 SS G_CDS: -5.42 Total: 10.00 kcal Atomic # 6 Polarization: 2.43 SS G_CDS: -0.74 Total: 1.69 kcal Atomic # 7 Polarization: -35.88 SS G_CDS: 0.23 Total: -35.65 kcal Atomic # 8 Polarization: -34.01 SS G_CDS: -0.95 Total: -34.97 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.03 Total: 15.65 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -31.38 -6.33 -37.71 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001599505159.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.836 kcal (2) G-P(sol) polarization free energy of solvation -31.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds