Wall clock time and date at job start Tue Mar 31 2020 18:16:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35899 * 117.00145 * 2 1 4 4 C 1.38736 * 120.05931 * 179.97438 * 3 2 1 5 5 C 1.38139 * 119.94714 * 180.02562 * 4 3 2 6 6 C 1.38273 * 120.05191 * 0.02619 * 5 4 3 7 7 C 1.50702 * 119.94134 * 179.97438 * 6 5 4 8 8 C 1.53003 * 109.47006 * 54.06457 * 7 6 5 9 9 C 1.53002 * 109.47005 * 294.06507 * 7 6 5 10 10 C 1.50699 * 109.47224 * 174.06663 * 7 6 5 11 11 O 1.21288 * 120.00107 * 84.58100 * 10 7 6 12 12 N 1.34783 * 119.99892 * 264.31135 * 10 7 6 13 13 C 1.37094 * 119.99657 * 242.63759 * 12 10 7 14 14 H 1.07995 * 120.00021 * 198.10400 * 13 12 10 15 15 C 1.38952 * 120.00009 * 18.09951 * 13 12 10 16 16 N 1.31404 * 120.00411 * 13.62359 * 15 13 12 17 17 Si 1.86804 * 119.99897 * 193.62081 * 15 13 12 18 18 H 1.48499 * 109.47234 * 60.00183 * 17 15 13 19 19 H 1.48504 * 109.47106 * 180.02562 * 17 15 13 20 20 H 1.48508 * 109.47013 * 299.99993 * 17 15 13 21 21 C 1.46498 * 120.00121 * 62.63524 * 12 10 7 22 22 C 1.52993 * 109.47096 * 93.23286 * 21 12 10 23 23 C 1.50707 * 109.47310 * 184.98165 * 22 21 12 24 24 O 1.20833 * 119.99393 * 359.97438 * 23 22 21 25 25 O 1.34219 * 120.00229 * 179.97438 * 23 22 21 26 26 C 1.38257 * 120.11555 * 0.24819 * 6 5 4 27 27 C 1.38146 * 120.05374 * 359.45559 * 26 6 5 28 28 H 1.08996 * 109.47302 * 299.99552 * 1 2 3 29 29 H 1.08998 * 109.47322 * 60.00271 * 1 2 3 30 30 H 1.09004 * 109.47406 * 179.97438 * 1 2 3 31 31 H 1.07998 * 120.02487 * 0.02562 * 4 3 2 32 32 H 1.07993 * 119.97755 * 180.02562 * 5 4 3 33 33 H 1.09001 * 109.46769 * 174.14854 * 8 7 6 34 34 H 1.08998 * 109.47081 * 294.15042 * 8 7 6 35 35 H 1.08998 * 109.47383 * 54.15501 * 8 7 6 36 36 H 1.09000 * 109.47125 * 304.76685 * 9 7 6 37 37 H 1.08998 * 109.47139 * 64.77220 * 9 7 6 38 38 H 1.08999 * 109.46974 * 184.76500 * 9 7 6 39 39 H 0.96998 * 120.00809 * 184.98131 * 16 15 13 40 40 H 1.09004 * 109.46868 * 213.23189 * 21 12 10 41 41 H 1.09001 * 109.47063 * 333.22910 * 21 12 10 42 42 H 1.08997 * 109.46899 * 304.97889 * 22 21 12 43 43 H 1.08999 * 109.47417 * 64.98132 * 22 21 12 44 44 H 0.96704 * 117.00153 * 179.97438 * 25 23 22 45 45 H 1.07995 * 119.97574 * 179.70424 * 26 6 5 46 46 H 1.08004 * 120.03267 * 180.24840 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0459 1.2108 0.0000 4 6 3.4313 1.2849 0.0005 5 6 4.0561 2.5169 0.0011 6 6 3.3018 3.6758 0.0016 7 6 3.9860 5.0185 0.0028 8 6 4.9722 5.0894 -1.1648 9 6 4.7412 5.2050 1.3203 10 6 2.9549 6.1078 -0.1437 11 8 2.3716 6.5261 0.8340 12 7 2.6849 6.6210 -1.3604 13 6 2.9291 7.9457 -1.6151 14 1 2.4592 8.4289 -2.4590 15 6 3.7809 8.6669 -0.7874 16 7 4.5558 8.0372 0.0669 17 14 3.8247 10.5316 -0.8891 18 1 2.4781 11.0760 -0.5797 19 1 4.8089 11.0578 0.0905 20 1 4.2223 10.9434 -2.2594 21 6 2.1307 5.7631 -2.4107 22 6 0.6038 5.8569 -2.3928 23 6 0.0289 4.8837 -3.3896 24 8 0.7653 4.1869 -4.0472 25 8 -1.3008 4.7909 -3.5469 26 6 1.9211 3.6048 0.0068 27 6 1.2915 2.3752 0.0001 28 1 -0.3634 0.5137 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 4.0208 0.3800 0.0005 32 1 5.1344 2.5751 0.0011 33 1 5.3901 6.0942 -1.2269 34 1 5.7761 4.3707 -1.0056 35 1 4.4530 4.8539 -2.0938 36 1 4.0536 5.0704 2.1554 37 1 5.5424 4.4691 1.3871 38 1 5.1654 6.2083 1.3570 39 1 5.0969 8.5417 0.6942 40 1 2.5035 6.0903 -3.3813 41 1 2.4335 4.7310 -2.2342 42 1 0.2366 5.6149 -1.3955 43 1 0.2988 6.8696 -2.6565 44 1 -1.6223 4.1527 -4.1984 45 1 1.3342 4.5113 0.0121 46 1 0.2128 2.3201 0.0001 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001599505159.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:16:21 Heat of formation + Delta-G solvation = -139.556985 kcal Electronic energy + Delta-G solvation = -31136.503751 eV Core-core repulsion = 26991.705621 eV Total energy + Delta-G solvation = -4144.798130 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.75511 -41.15266 -40.46457 -38.44748 -37.21395 -36.49353 -35.35555 -34.15126 -32.09900 -31.63304 -30.10695 -28.11492 -27.89448 -26.98173 -25.81957 -24.15865 -23.58037 -22.38692 -21.70947 -20.33496 -19.30040 -19.08345 -18.46780 -17.70658 -17.17989 -17.03119 -16.87987 -16.68661 -16.61906 -16.11517 -15.76295 -15.71301 -15.11284 -14.66990 -14.48563 -14.31380 -14.15595 -14.13810 -13.79288 -13.50159 -13.39292 -13.17437 -12.96990 -12.91897 -12.73847 -12.65659 -12.62310 -12.52977 -12.45850 -12.22974 -12.03069 -11.98714 -11.77410 -11.63924 -11.56230 -11.48194 -10.93645 -10.18360 -9.94099 -9.23573 -8.99078 -8.12461 -5.58029 0.39005 0.45862 1.20171 1.44863 1.51064 1.55580 1.90558 2.11962 2.39128 2.50797 2.79759 3.23706 3.30637 3.80781 3.90662 3.91854 3.98066 4.03609 4.18449 4.31997 4.38276 4.39579 4.43011 4.51838 4.54304 4.63041 4.65218 4.70953 4.75620 4.84541 4.95056 5.02788 5.07066 5.11993 5.19958 5.25942 5.28201 5.37727 5.54515 5.60042 5.67732 5.72341 5.76838 5.80693 6.19187 6.45340 7.01621 7.08869 7.43094 7.69423 8.11535 8.99131 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.011626 B = 0.005110 C = 0.003916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2407.797059 B = 5478.310342 C = 7148.869063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.328 6.328 3 C 0.113 3.887 4 C -0.149 4.149 5 C -0.071 4.071 6 C -0.109 4.109 7 C -0.030 4.030 8 C -0.114 4.114 9 C -0.112 4.112 10 C 0.610 3.390 11 O -0.571 6.571 12 N -0.564 5.564 13 C -0.301 4.301 14 H 0.088 0.912 15 C -0.021 4.021 16 N -0.900 5.900 17 Si 0.975 3.025 18 H -0.286 1.286 19 H -0.293 1.293 20 H -0.267 1.267 21 C 0.149 3.851 22 C -0.130 4.130 23 C 0.497 3.503 24 O -0.541 6.541 25 O -0.510 6.510 26 C -0.095 4.095 27 C -0.204 4.204 28 H 0.059 0.941 29 H 0.057 0.943 30 H 0.125 0.875 31 H 0.153 0.847 32 H 0.149 0.851 33 H 0.058 0.942 34 H 0.067 0.933 35 H 0.045 0.955 36 H 0.031 0.969 37 H 0.071 0.929 38 H 0.063 0.937 39 H 0.262 0.738 40 H 0.066 0.934 41 H 0.066 0.934 42 H 0.093 0.907 43 H 0.112 0.888 44 H 0.427 0.573 45 H 0.101 0.899 46 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.138 -13.707 -3.429 15.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.242 6.242 3 C 0.068 3.932 4 C -0.167 4.167 5 C -0.089 4.089 6 C -0.109 4.109 7 C -0.034 4.034 8 C -0.171 4.171 9 C -0.169 4.169 10 C 0.404 3.596 11 O -0.448 6.448 12 N -0.293 5.293 13 C -0.429 4.429 14 H 0.106 0.894 15 C -0.220 4.220 16 N -0.543 5.543 17 Si 0.802 3.198 18 H -0.212 1.212 19 H -0.219 1.219 20 H -0.192 1.192 21 C 0.024 3.976 22 C -0.170 4.170 23 C 0.340 3.660 24 O -0.431 6.431 25 O -0.324 6.324 26 C -0.114 4.114 27 C -0.223 4.223 28 H 0.078 0.922 29 H 0.076 0.924 30 H 0.143 0.857 31 H 0.171 0.829 32 H 0.167 0.833 33 H 0.077 0.923 34 H 0.086 0.914 35 H 0.064 0.936 36 H 0.050 0.950 37 H 0.090 0.910 38 H 0.082 0.918 39 H 0.072 0.928 40 H 0.084 0.916 41 H 0.085 0.915 42 H 0.112 0.888 43 H 0.131 0.869 44 H 0.289 0.711 45 H 0.119 0.881 46 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -5.849 -13.526 -2.700 14.982 hybrid contribution -0.487 1.258 -0.224 1.367 sum -6.335 -12.268 -2.924 14.114 Atomic orbital electron populations 1.23310 0.76860 1.05585 1.01831 1.86021 1.23104 1.26271 1.88833 1.19110 0.92791 0.84177 0.97118 1.20638 0.91406 0.98896 1.05756 1.20954 1.00776 0.90073 0.97094 1.19784 0.93517 0.94706 1.02915 1.19671 0.95232 0.90199 0.98277 1.21678 0.97526 1.02446 0.95460 1.21590 0.98653 1.02795 0.93873 1.19726 0.78685 0.79287 0.81923 1.90383 1.50675 1.61235 1.42503 1.42737 1.68818 1.08576 1.09185 1.19490 1.23308 0.85788 1.14281 0.89384 1.25684 0.94829 1.02969 0.98557 1.69381 1.26520 1.35944 1.22453 0.85248 0.76917 0.79925 0.77719 1.21204 1.21888 1.19214 1.20820 0.89968 0.94692 0.92151 1.21908 0.98111 0.99255 0.97723 1.23246 0.80347 0.81160 0.81230 1.90702 1.61248 1.44327 1.46841 1.84521 1.23606 1.62495 1.61793 1.20948 0.94468 0.97245 0.98692 1.21255 1.00659 0.91650 1.08698 0.92210 0.92424 0.85715 0.82946 0.83309 0.92316 0.91417 0.93581 0.95007 0.90981 0.91781 0.92792 0.91573 0.91547 0.88829 0.86949 0.71134 0.88144 0.84221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 9.81 113.37 1.11 1.42 16 2 O -0.33 -8.09 10.50 -92.41 -0.97 -9.06 16 3 C 0.11 3.21 6.69 22.51 0.15 3.36 16 4 C -0.15 -4.04 9.99 22.37 0.22 -3.81 16 5 C -0.07 -2.12 8.86 22.25 0.20 -1.92 16 6 C -0.11 -3.95 4.05 -19.85 -0.08 -4.03 16 7 C -0.03 -1.23 0.44 -53.67 -0.02 -1.25 16 8 C -0.11 -4.49 7.41 71.98 0.53 -3.95 16 9 C -0.11 -4.60 7.84 71.98 0.56 -4.04 16 10 C 0.61 29.88 1.01 87.66 0.09 29.97 16 11 O -0.57 -32.40 16.20 -3.05 -0.05 -32.45 16 12 N -0.56 -26.72 1.86 -635.55 -1.18 -27.90 16 13 C -0.30 -15.45 9.65 84.04 0.81 -14.64 16 14 H 0.09 4.27 7.87 -2.91 -0.02 4.25 16 15 C -0.02 -1.12 5.15 84.93 0.44 -0.69 16 16 N -0.90 -48.72 8.06 21.66 0.17 -48.55 16 17 Si 0.97 43.31 29.58 68.60 2.03 45.34 16 18 H -0.29 -12.84 7.11 99.48 0.71 -12.14 16 19 H -0.29 -13.15 7.11 99.48 0.71 -12.44 16 20 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 21 C 0.15 5.88 3.44 86.38 0.30 6.18 16 22 C -0.13 -4.38 6.11 29.85 0.18 -4.20 16 23 C 0.50 14.53 8.33 71.24 0.59 15.12 16 24 O -0.54 -18.42 16.68 21.94 0.37 -18.05 16 25 O -0.51 -11.01 13.42 -51.31 -0.69 -11.70 16 26 C -0.10 -3.47 7.83 22.25 0.17 -3.30 16 27 C -0.20 -6.19 9.04 22.37 0.20 -5.99 16 28 H 0.06 0.94 7.66 -2.39 -0.02 0.92 16 29 H 0.06 0.92 7.66 -2.39 -0.02 0.91 16 30 H 0.12 1.35 8.14 -2.38 -0.02 1.33 16 31 H 0.15 3.30 8.06 -2.91 -0.02 3.28 16 32 H 0.15 3.73 7.25 -2.91 -0.02 3.71 16 33 H 0.06 2.70 6.98 -2.39 -0.02 2.68 16 34 H 0.07 2.19 7.30 -2.39 -0.02 2.17 16 35 H 0.05 1.80 6.15 -2.39 -0.01 1.78 16 36 H 0.03 1.35 8.01 -2.39 -0.02 1.33 16 37 H 0.07 2.41 7.94 -2.39 -0.02 2.39 16 38 H 0.06 2.98 6.35 -2.39 -0.02 2.97 16 39 H 0.26 14.05 8.32 -92.71 -0.77 13.28 16 40 H 0.07 2.61 8.07 -2.38 -0.02 2.59 16 41 H 0.07 2.63 4.83 -2.39 -0.01 2.62 16 42 H 0.09 3.27 7.01 -2.39 -0.02 3.25 16 43 H 0.11 3.66 8.14 -2.39 -0.02 3.64 16 44 H 0.43 4.91 9.10 -74.05 -0.67 4.24 16 45 H 0.10 4.12 4.85 -2.91 -0.01 4.11 16 46 H 0.14 3.56 6.30 -2.91 -0.02 3.54 16 Total: -1.00 -69.71 369.24 5.50 -64.22 By element: Atomic # 1 Polarization: 29.56 SS G_CDS: 0.35 Total: 29.91 kcal Atomic # 6 Polarization: 2.77 SS G_CDS: 5.46 Total: 8.24 kcal Atomic # 7 Polarization: -75.44 SS G_CDS: -1.01 Total: -76.45 kcal Atomic # 8 Polarization: -69.92 SS G_CDS: -1.34 Total: -71.26 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 2.03 Total: 45.34 kcal Total: -69.71 5.50 -64.22 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001599505159.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.339 kcal (2) G-P(sol) polarization free energy of solvation -69.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds