Wall clock time and date at job start Tue Mar 31 2020 18:34:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 109.47225 * 2 1 4 4 C 1.53001 * 109.46834 * 240.00271 * 2 1 3 5 5 C 1.53002 * 109.47080 * 119.99978 * 2 1 3 6 6 H 1.08997 * 109.46850 * 179.97438 * 5 2 1 7 7 C 1.50694 * 109.46871 * 300.00034 * 5 2 1 8 8 O 1.20833 * 119.99936 * 120.00232 * 7 5 2 9 9 O 1.34224 * 120.00444 * 299.99411 * 7 5 2 10 10 C 1.50707 * 109.46693 * 60.00258 * 5 2 1 11 11 O 1.21273 * 120.00204 * 359.97438 * 10 5 2 12 12 N 1.34774 * 119.99327 * 180.02562 * 10 5 2 13 13 C 1.46508 * 119.99681 * 179.97438 * 12 10 5 14 14 C 1.50699 * 109.47169 * 180.02562 * 13 12 10 15 15 C 1.38328 * 119.96224 * 270.02412 * 14 13 12 16 16 C 1.38279 * 120.13490 * 179.97438 * 15 14 13 17 17 C 1.38120 * 120.06774 * 359.77134 * 16 15 14 18 18 C 1.38852 * 119.93464 * 0.50144 * 17 16 15 19 19 O 1.35752 * 120.07221 * 179.74702 * 18 17 16 20 20 C 1.34829 * 116.99954 * 354.17311 * 19 18 17 21 21 H 1.07998 * 119.99999 * 5.03596 * 20 19 18 22 22 C 1.38656 * 119.99670 * 185.03445 * 20 19 18 23 23 N 1.31550 * 120.00275 * 0.02562 * 22 20 19 24 24 Si 1.86802 * 119.99668 * 179.97438 * 22 20 19 25 25 H 1.48497 * 109.47063 * 60.00398 * 24 22 20 26 26 H 1.48498 * 109.47240 * 180.02562 * 24 22 20 27 27 H 1.48501 * 109.47319 * 300.00306 * 24 22 20 28 28 C 1.38073 * 119.96539 * 89.99807 * 14 13 12 29 29 H 1.08997 * 109.47254 * 300.00198 * 1 2 3 30 30 H 1.09004 * 109.47202 * 59.99850 * 1 2 3 31 31 H 1.08993 * 109.47264 * 179.97438 * 1 2 3 32 32 H 1.08991 * 109.47218 * 179.97438 * 3 2 1 33 33 H 1.09004 * 109.47153 * 300.00179 * 3 2 1 34 34 H 1.09006 * 109.46913 * 59.99738 * 3 2 1 35 35 H 1.08997 * 109.47246 * 299.99543 * 4 2 1 36 36 H 1.08995 * 109.47579 * 60.00048 * 4 2 1 37 37 H 1.09009 * 109.46698 * 180.02562 * 4 2 1 38 38 H 0.96703 * 117.00125 * 179.97438 * 9 7 5 39 39 H 0.96993 * 120.00552 * 0.02562 * 12 10 5 40 40 H 1.09004 * 109.46757 * 59.99773 * 13 12 10 41 41 H 1.08998 * 109.46890 * 300.00426 * 13 12 10 42 42 H 1.08001 * 119.93314 * 359.97438 * 15 14 13 43 43 H 1.07999 * 119.96467 * 180.02562 * 16 15 14 44 44 H 1.08001 * 120.03298 * 180.27571 * 17 16 15 45 45 H 0.96999 * 119.99936 * 179.97438 * 23 22 20 46 46 H 1.07996 * 120.03547 * 0.04988 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0400 -0.7213 1.2493 6 1 3.1300 -0.7216 1.2490 7 6 1.5377 -0.0108 2.4796 8 8 0.8430 -0.5981 3.2750 9 8 1.8620 1.2742 2.6921 10 6 1.5377 -2.1421 1.2491 11 8 0.8401 -2.5386 0.3398 12 7 1.8629 -2.9718 2.2602 13 6 1.3741 -4.3529 2.2605 14 6 1.8754 -5.0630 3.4915 15 6 3.0843 -5.7346 3.4575 16 6 3.5480 -6.3869 4.5851 17 6 2.8071 -6.3657 5.7506 18 6 1.5906 -5.6973 5.7863 19 8 0.8578 -5.6790 6.9289 20 6 1.3066 -6.4282 7.9560 21 1 2.2530 -6.9425 7.8762 22 6 0.5532 -6.5384 9.1148 23 7 -0.5997 -5.9124 9.2119 24 14 1.1748 -7.5771 10.5377 25 1 2.4789 -7.0439 11.0070 26 1 0.1919 -7.5319 11.6499 27 1 1.3474 -8.9815 10.0870 28 6 1.1280 -5.0421 4.6522 29 1 -0.3633 0.5138 0.8899 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9564 -0.8900 34 1 1.6767 1.9564 0.8900 35 1 1.6767 -1.7489 -1.2493 36 1 1.6767 -0.2074 -2.1393 37 1 3.1300 -0.7216 -1.2491 38 1 1.5158 1.6873 3.4950 39 1 2.4198 -2.6544 2.9881 40 1 1.7374 -4.8670 1.3706 41 1 0.2841 -4.3526 2.2602 42 1 3.6671 -5.7495 2.5484 43 1 4.4923 -6.9101 4.5556 44 1 3.1720 -6.8717 6.6323 45 1 -1.1269 -5.9898 10.0224 46 1 0.1841 -4.5179 4.6780 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001602852924.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:34:19 Heat of formation + Delta-G solvation = -134.155573 kcal Electronic energy + Delta-G solvation = -29045.862732 eV Core-core repulsion = 24901.298825 eV Total energy + Delta-G solvation = -4144.563907 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.42598 -39.55493 -39.04563 -37.23504 -36.59814 -36.24326 -34.50893 -32.33525 -31.20731 -29.66384 -28.97524 -27.47753 -27.39798 -25.90117 -25.06205 -22.85247 -21.71216 -20.92572 -20.68111 -19.47588 -18.24822 -17.93045 -17.37612 -17.02809 -16.90260 -16.06321 -15.67130 -15.28283 -14.98613 -14.63901 -14.46305 -14.32600 -14.18595 -13.94383 -13.62002 -13.57733 -13.15980 -13.00470 -12.70298 -12.41969 -12.35761 -12.25149 -12.14841 -11.80416 -11.68627 -11.45157 -11.40624 -11.35475 -11.06672 -10.95190 -10.89514 -10.82757 -10.70428 -10.64069 -10.49008 -9.71283 -9.40530 -8.96684 -8.88123 -8.23485 -7.32188 -6.47964 -4.07675 1.87409 1.91075 2.17359 2.27845 3.00198 3.10229 3.11386 3.14860 3.23637 3.93179 4.14039 4.40226 4.52613 4.61502 4.87821 4.90188 4.97838 5.03110 5.07826 5.15886 5.27936 5.45866 5.54271 5.55126 5.67590 5.73081 5.74312 5.83004 5.84387 5.88161 5.93898 6.04222 6.08218 6.20825 6.24676 6.27312 6.28658 6.53660 6.56410 6.82915 6.99627 7.19453 7.26943 7.36494 7.47721 7.58957 7.71984 7.95821 8.12845 8.96915 9.66120 10.69689 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.018522 B = 0.002504 C = 0.002336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1511.365967 B =11179.322187 C =11985.348243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.040 4.040 3 C -0.154 4.154 4 C -0.153 4.153 5 C -0.098 4.098 6 H 0.131 0.869 7 C 0.486 3.514 8 O -0.492 6.492 9 O -0.507 6.507 10 C 0.532 3.468 11 O -0.523 6.523 12 N -0.704 5.704 13 C 0.169 3.831 14 C -0.074 4.074 15 C -0.196 4.196 16 C -0.077 4.077 17 C -0.226 4.226 18 C 0.150 3.850 19 O -0.175 6.175 20 C -0.394 4.394 21 H 0.092 0.908 22 C 0.040 3.960 23 N -0.861 5.861 24 Si 0.941 3.059 25 H -0.270 1.270 26 H -0.278 1.278 27 H -0.270 1.270 28 C -0.167 4.167 29 H 0.043 0.957 30 H 0.058 0.942 31 H 0.089 0.911 32 H 0.056 0.944 33 H 0.058 0.942 34 H 0.079 0.921 35 H 0.088 0.912 36 H 0.058 0.942 37 H 0.050 0.950 38 H 0.410 0.590 39 H 0.403 0.597 40 H 0.075 0.925 41 H 0.075 0.925 42 H 0.107 0.893 43 H 0.109 0.891 44 H 0.128 0.872 45 H 0.271 0.729 46 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.037 12.525 -16.359 22.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.041 4.041 3 C -0.211 4.211 4 C -0.210 4.210 5 C -0.120 4.120 6 H 0.149 0.851 7 C 0.327 3.673 8 O -0.378 6.378 9 O -0.319 6.319 10 C 0.316 3.684 11 O -0.401 6.401 12 N -0.354 5.354 13 C 0.047 3.953 14 C -0.075 4.075 15 C -0.216 4.216 16 C -0.095 4.095 17 C -0.246 4.246 18 C 0.096 3.904 19 O -0.079 6.079 20 C -0.470 4.470 21 H 0.109 0.891 22 C -0.165 4.165 23 N -0.495 5.495 24 Si 0.766 3.234 25 H -0.195 1.195 26 H -0.202 1.202 27 H -0.195 1.195 28 C -0.186 4.186 29 H 0.062 0.938 30 H 0.077 0.923 31 H 0.108 0.892 32 H 0.075 0.925 33 H 0.077 0.923 34 H 0.097 0.903 35 H 0.106 0.894 36 H 0.077 0.923 37 H 0.069 0.931 38 H 0.269 0.731 39 H 0.237 0.763 40 H 0.093 0.907 41 H 0.093 0.907 42 H 0.125 0.875 43 H 0.127 0.873 44 H 0.145 0.855 45 H 0.081 0.919 46 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 7.066 12.009 -16.881 21.888 hybrid contribution 0.520 -0.099 1.813 1.889 sum 7.585 11.909 -15.068 20.650 Atomic orbital electron populations 1.22191 0.93484 1.04723 1.01142 1.20282 0.96834 0.95068 0.91897 1.22174 1.01222 0.94561 1.03118 1.22120 1.00260 1.03016 0.95573 1.21475 1.04260 0.93043 0.93248 0.85098 1.22797 0.77785 0.80358 0.86402 1.90882 1.34509 1.66533 1.45840 1.84595 1.72504 1.26603 1.48246 1.19580 0.80493 0.85880 0.82408 1.90589 1.37121 1.76586 1.35804 1.46057 1.52730 1.12317 1.24249 1.20187 0.99354 0.79928 0.95871 1.19248 0.95337 0.99351 0.93571 1.20465 0.97459 1.05115 0.98524 1.20732 0.98373 0.97727 0.92671 1.21235 0.96891 1.07040 0.99412 1.19326 0.90479 0.93084 0.87470 1.83989 1.46425 1.59759 1.17688 1.21277 1.05934 1.27711 0.92089 0.89102 1.25298 0.95301 0.97582 0.98278 1.70029 1.11494 1.39861 1.28114 0.85780 0.78546 0.79621 0.79477 1.19496 1.20240 1.19466 1.20117 1.01725 1.05757 0.91048 0.93776 0.92264 0.89232 0.92466 0.92260 0.90287 0.89384 0.92336 0.93101 0.73054 0.76256 0.90703 0.90658 0.87515 0.87299 0.85482 0.91890 0.86325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.69 7.93 37.16 0.29 -1.39 16 2 C -0.04 -0.37 0.54 -154.50 -0.08 -0.45 16 3 C -0.15 -1.13 7.95 37.16 0.30 -0.83 16 4 C -0.15 -1.36 8.18 37.16 0.30 -1.06 16 5 C -0.10 -0.97 2.05 -92.92 -0.19 -1.16 16 6 H 0.13 0.96 8.14 -51.93 -0.42 0.54 16 7 C 0.49 5.22 6.17 36.00 0.22 5.44 16 8 O -0.49 -7.27 16.15 -18.76 -0.30 -7.57 16 9 O -0.51 -3.75 10.34 -39.24 -0.41 -4.15 16 10 C 0.53 6.89 6.07 -10.98 -0.07 6.82 16 11 O -0.52 -7.80 11.35 5.56 0.06 -7.73 16 12 N -0.70 -9.50 4.94 -61.47 -0.30 -9.81 16 13 C 0.17 2.51 5.80 -5.19 -0.03 2.48 16 14 C -0.07 -1.28 5.25 -104.65 -0.55 -1.83 16 15 C -0.20 -3.20 9.70 -39.53 -0.38 -3.59 16 16 C -0.08 -1.35 10.04 -39.61 -0.40 -1.74 16 17 C -0.23 -4.78 9.17 -39.40 -0.36 -5.14 16 18 C 0.15 3.58 6.65 -39.11 -0.26 3.32 16 19 O -0.18 -4.98 9.76 0.05 0.00 -4.98 16 20 C -0.39 -10.92 9.49 30.89 0.29 -10.63 16 21 H 0.09 2.31 5.21 -52.49 -0.27 2.04 16 22 C 0.04 1.10 5.49 -17.52 -0.10 1.00 16 23 N -0.86 -25.24 13.67 55.48 0.76 -24.48 16 24 Si 0.94 20.35 29.55 -169.99 -5.02 15.33 16 25 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 26 H -0.28 -5.88 7.11 56.52 0.40 -5.47 16 27 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 28 C -0.17 -3.49 9.65 -39.39 -0.38 -3.87 16 29 H 0.04 0.48 7.22 -51.93 -0.37 0.11 16 30 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.09 1.18 5.51 -51.93 -0.29 0.89 16 32 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.08 0.59 5.32 -51.93 -0.28 0.32 16 35 H 0.09 0.98 5.51 -51.93 -0.29 0.70 16 36 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 37 H 0.05 0.39 8.14 -51.92 -0.42 -0.04 16 38 H 0.41 1.64 9.10 45.56 0.41 2.05 16 39 H 0.40 5.23 8.15 -40.82 -0.33 4.90 16 40 H 0.07 1.02 8.09 -51.93 -0.42 0.60 16 41 H 0.08 1.19 8.08 -51.93 -0.42 0.77 16 42 H 0.11 1.46 8.06 -52.49 -0.42 1.04 16 43 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 44 H 0.13 2.68 5.64 -52.49 -0.30 2.39 16 45 H 0.27 7.30 8.31 -40.82 -0.34 6.97 16 46 H 0.12 2.53 8.06 -52.49 -0.42 2.11 16 LS Contribution 376.34 15.07 5.67 5.67 Total: -1.00 -33.25 376.34 -6.42 -39.67 By element: Atomic # 1 Polarization: 16.18 SS G_CDS: -5.49 Total: 10.69 kcal Atomic # 6 Polarization: -11.24 SS G_CDS: -1.39 Total: -12.63 kcal Atomic # 7 Polarization: -34.74 SS G_CDS: 0.45 Total: -34.28 kcal Atomic # 8 Polarization: -23.80 SS G_CDS: -0.65 Total: -24.44 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.33 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -33.25 -6.42 -39.67 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001602852924.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.486 kcal (2) G-P(sol) polarization free energy of solvation -33.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds