Wall clock time and date at job start Tue Mar 31 2020 18:34:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 109.47225 * 2 1 4 4 C 1.53001 * 109.46834 * 240.00271 * 2 1 3 5 5 C 1.53002 * 109.47080 * 119.99978 * 2 1 3 6 6 H 1.08997 * 109.46850 * 179.97438 * 5 2 1 7 7 C 1.50694 * 109.46871 * 300.00034 * 5 2 1 8 8 O 1.20833 * 119.99936 * 120.00232 * 7 5 2 9 9 O 1.34224 * 120.00444 * 299.99411 * 7 5 2 10 10 C 1.50707 * 109.46693 * 60.00258 * 5 2 1 11 11 O 1.21273 * 120.00204 * 359.97438 * 10 5 2 12 12 N 1.34774 * 119.99327 * 180.02562 * 10 5 2 13 13 C 1.46508 * 119.99681 * 179.97438 * 12 10 5 14 14 C 1.50699 * 109.47169 * 180.02562 * 13 12 10 15 15 C 1.38328 * 119.96224 * 270.02412 * 14 13 12 16 16 C 1.38279 * 120.13490 * 179.97438 * 15 14 13 17 17 C 1.38120 * 120.06774 * 359.77134 * 16 15 14 18 18 C 1.38852 * 119.93464 * 0.50144 * 17 16 15 19 19 O 1.35752 * 120.07221 * 179.74702 * 18 17 16 20 20 C 1.34829 * 116.99954 * 354.17311 * 19 18 17 21 21 H 1.07998 * 119.99999 * 5.03596 * 20 19 18 22 22 C 1.38656 * 119.99670 * 185.03445 * 20 19 18 23 23 N 1.31550 * 120.00275 * 0.02562 * 22 20 19 24 24 Si 1.86802 * 119.99668 * 179.97438 * 22 20 19 25 25 H 1.48497 * 109.47063 * 60.00398 * 24 22 20 26 26 H 1.48498 * 109.47240 * 180.02562 * 24 22 20 27 27 H 1.48501 * 109.47319 * 300.00306 * 24 22 20 28 28 C 1.38073 * 119.96539 * 89.99807 * 14 13 12 29 29 H 1.08997 * 109.47254 * 300.00198 * 1 2 3 30 30 H 1.09004 * 109.47202 * 59.99850 * 1 2 3 31 31 H 1.08993 * 109.47264 * 179.97438 * 1 2 3 32 32 H 1.08991 * 109.47218 * 179.97438 * 3 2 1 33 33 H 1.09004 * 109.47153 * 300.00179 * 3 2 1 34 34 H 1.09006 * 109.46913 * 59.99738 * 3 2 1 35 35 H 1.08997 * 109.47246 * 299.99543 * 4 2 1 36 36 H 1.08995 * 109.47579 * 60.00048 * 4 2 1 37 37 H 1.09009 * 109.46698 * 180.02562 * 4 2 1 38 38 H 0.96703 * 117.00125 * 179.97438 * 9 7 5 39 39 H 0.96993 * 120.00552 * 0.02562 * 12 10 5 40 40 H 1.09004 * 109.46757 * 59.99773 * 13 12 10 41 41 H 1.08998 * 109.46890 * 300.00426 * 13 12 10 42 42 H 1.08001 * 119.93314 * 359.97438 * 15 14 13 43 43 H 1.07999 * 119.96467 * 180.02562 * 16 15 14 44 44 H 1.08001 * 120.03298 * 180.27571 * 17 16 15 45 45 H 0.96999 * 119.99936 * 179.97438 * 23 22 20 46 46 H 1.07996 * 120.03547 * 0.04988 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0400 -0.7213 1.2493 6 1 3.1300 -0.7216 1.2490 7 6 1.5377 -0.0108 2.4796 8 8 0.8430 -0.5981 3.2750 9 8 1.8620 1.2742 2.6921 10 6 1.5377 -2.1421 1.2491 11 8 0.8401 -2.5386 0.3398 12 7 1.8629 -2.9718 2.2602 13 6 1.3741 -4.3529 2.2605 14 6 1.8754 -5.0630 3.4915 15 6 3.0843 -5.7346 3.4575 16 6 3.5480 -6.3869 4.5851 17 6 2.8071 -6.3657 5.7506 18 6 1.5906 -5.6973 5.7863 19 8 0.8578 -5.6790 6.9289 20 6 1.3066 -6.4282 7.9560 21 1 2.2530 -6.9425 7.8762 22 6 0.5532 -6.5384 9.1148 23 7 -0.5997 -5.9124 9.2119 24 14 1.1748 -7.5771 10.5377 25 1 2.4789 -7.0439 11.0070 26 1 0.1919 -7.5319 11.6499 27 1 1.3474 -8.9815 10.0870 28 6 1.1280 -5.0421 4.6522 29 1 -0.3633 0.5138 0.8899 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9564 -0.8900 34 1 1.6767 1.9564 0.8900 35 1 1.6767 -1.7489 -1.2493 36 1 1.6767 -0.2074 -2.1393 37 1 3.1300 -0.7216 -1.2491 38 1 1.5158 1.6873 3.4950 39 1 2.4198 -2.6544 2.9881 40 1 1.7374 -4.8670 1.3706 41 1 0.2841 -4.3526 2.2602 42 1 3.6671 -5.7495 2.5484 43 1 4.4923 -6.9101 4.5556 44 1 3.1720 -6.8717 6.6323 45 1 -1.1269 -5.9898 10.0224 46 1 0.1841 -4.5179 4.6780 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001602852924.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:34:18 Heat of formation + Delta-G solvation = -157.214288 kcal Electronic energy + Delta-G solvation = -29046.862633 eV Core-core repulsion = 24901.298825 eV Total energy + Delta-G solvation = -4145.563808 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.32224 -40.91007 -40.34460 -38.63743 -37.70024 -37.07951 -35.72736 -34.30666 -32.52258 -30.99025 -30.31341 -28.22777 -28.06604 -27.55368 -26.69276 -23.75298 -23.27391 -22.48577 -21.69002 -20.36963 -19.56409 -19.05042 -18.90487 -18.28662 -17.81467 -17.03391 -16.84679 -16.67131 -16.49855 -16.12168 -15.85014 -15.54778 -15.42148 -15.02392 -14.92211 -14.68855 -14.38654 -14.05897 -13.95638 -13.84824 -13.63229 -13.39288 -13.02724 -12.94200 -12.89479 -12.62910 -12.53422 -12.40099 -12.31621 -12.23828 -12.22226 -12.14995 -11.77385 -11.68325 -11.47686 -11.23217 -10.83270 -10.70158 -10.08646 -9.76831 -9.05122 -8.48105 -6.17414 0.36120 0.69098 1.05163 1.24716 1.34098 1.45050 1.50879 2.09973 2.16702 2.23937 2.82930 3.13469 3.33205 3.38261 3.61241 3.80330 3.84868 4.07524 4.15223 4.20660 4.28609 4.33619 4.40988 4.44301 4.51422 4.64799 4.71343 4.79156 4.86924 4.96383 5.00859 5.09127 5.09656 5.13374 5.20164 5.23229 5.24425 5.47348 5.47774 5.54076 5.60839 5.68071 5.69110 5.69824 5.99984 6.15583 6.41985 6.87888 6.96013 7.09938 7.76989 8.75079 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.018522 B = 0.002504 C = 0.002336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1511.365967 B =11179.322187 C =11985.348243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.038 4.038 3 C -0.149 4.149 4 C -0.149 4.149 5 C -0.096 4.096 6 H 0.166 0.834 7 C 0.494 3.506 8 O -0.542 6.542 9 O -0.491 6.491 10 C 0.528 3.472 11 O -0.544 6.544 12 N -0.705 5.705 13 C 0.175 3.825 14 C -0.061 4.061 15 C -0.166 4.166 16 C -0.068 4.068 17 C -0.234 4.234 18 C 0.111 3.889 19 O -0.234 6.234 20 C -0.414 4.414 21 H 0.105 0.895 22 C -0.025 4.025 23 N -0.923 5.923 24 Si 1.020 2.980 25 H -0.255 1.255 26 H -0.274 1.274 27 H -0.256 1.256 28 C -0.184 4.184 29 H 0.034 0.966 30 H 0.071 0.929 31 H 0.060 0.940 32 H 0.072 0.928 33 H 0.067 0.933 34 H 0.076 0.924 35 H 0.063 0.937 36 H 0.067 0.933 37 H 0.069 0.931 38 H 0.426 0.574 39 H 0.406 0.594 40 H 0.098 0.902 41 H 0.056 0.944 42 H 0.154 0.846 43 H 0.153 0.847 44 H 0.122 0.878 45 H 0.272 0.728 46 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.800 12.913 -18.603 25.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.038 4.038 3 C -0.206 4.206 4 C -0.206 4.206 5 C -0.117 4.117 6 H 0.183 0.817 7 C 0.337 3.663 8 O -0.432 6.432 9 O -0.305 6.305 10 C 0.314 3.686 11 O -0.423 6.423 12 N -0.355 5.355 13 C 0.052 3.948 14 C -0.061 4.061 15 C -0.185 4.185 16 C -0.086 4.086 17 C -0.254 4.254 18 C 0.061 3.939 19 O -0.141 6.141 20 C -0.490 4.490 21 H 0.122 0.878 22 C -0.222 4.222 23 N -0.561 5.561 24 Si 0.839 3.161 25 H -0.179 1.179 26 H -0.198 1.198 27 H -0.181 1.181 28 C -0.204 4.204 29 H 0.054 0.946 30 H 0.090 0.910 31 H 0.079 0.921 32 H 0.091 0.909 33 H 0.086 0.914 34 H 0.094 0.906 35 H 0.082 0.918 36 H 0.086 0.914 37 H 0.088 0.912 38 H 0.289 0.711 39 H 0.241 0.759 40 H 0.116 0.884 41 H 0.075 0.925 42 H 0.172 0.828 43 H 0.170 0.830 44 H 0.140 0.860 45 H 0.081 0.919 46 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 10.880 12.438 -19.185 25.321 hybrid contribution -0.549 -0.096 2.133 2.205 sum 10.331 12.342 -17.052 23.448 Atomic orbital electron populations 1.22156 0.95126 1.02809 1.01354 1.20319 0.95475 0.96414 0.91613 1.22134 1.02188 0.92779 1.03452 1.22061 1.01393 1.01481 0.95658 1.21545 1.06138 0.90796 0.93246 0.81671 1.22920 0.76599 0.80919 0.85865 1.90885 1.36881 1.67786 1.47614 1.84551 1.71822 1.24879 1.49206 1.20090 0.79898 0.86940 0.81646 1.90601 1.37825 1.77275 1.36602 1.46000 1.52956 1.11851 1.24705 1.20069 0.98448 0.80980 0.95291 1.19478 0.95193 0.98666 0.92781 1.21023 0.96243 1.01555 0.99664 1.21195 0.99259 0.96984 0.91176 1.21385 0.96282 1.06729 1.00974 1.19855 0.91787 0.95006 0.87225 1.83957 1.48711 1.62067 1.19385 1.21819 1.06665 1.27975 0.92572 0.87786 1.26642 0.95372 0.98918 1.01263 1.70194 1.13656 1.42946 1.29299 0.84631 0.78333 0.77929 0.75217 1.17916 1.19827 1.18057 1.20210 1.01875 1.06217 0.92066 0.94639 0.90968 0.92141 0.90854 0.91396 0.90555 0.91843 0.91443 0.91208 0.71121 0.75904 0.88376 0.92546 0.82839 0.82973 0.86014 0.91869 0.88436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.25 7.93 71.98 0.57 -2.68 16 2 C -0.04 -0.60 0.54 -52.18 -0.03 -0.63 16 3 C -0.15 -1.68 7.95 71.98 0.57 -1.10 16 4 C -0.15 -2.27 8.18 71.98 0.59 -1.68 16 5 C -0.10 -1.69 2.05 -12.29 -0.03 -1.72 16 6 H 0.17 1.78 8.14 -2.39 -0.02 1.76 16 7 C 0.49 10.00 6.17 71.23 0.44 10.44 16 8 O -0.54 -16.25 16.15 21.94 0.35 -15.90 16 9 O -0.49 -6.17 10.34 -51.36 -0.53 -6.70 16 10 C 0.53 13.10 6.07 87.66 0.53 13.63 16 11 O -0.54 -16.01 11.35 -3.01 -0.03 -16.04 16 12 N -0.71 -18.20 4.94 -466.77 -2.31 -20.50 16 13 C 0.18 4.98 5.80 85.63 0.50 5.48 16 14 C -0.06 -2.01 5.25 -19.88 -0.10 -2.11 16 15 C -0.17 -4.72 9.70 22.30 0.22 -4.51 16 16 C -0.07 -2.15 10.04 22.25 0.22 -1.92 16 17 C -0.23 -9.83 9.17 22.39 0.21 -9.63 16 18 C 0.11 5.56 6.65 22.58 0.15 5.71 16 19 O -0.23 -14.33 9.76 -22.74 -0.22 -14.55 16 20 C -0.41 -24.20 9.49 67.92 0.64 -23.56 16 21 H 0.10 5.48 5.21 -2.91 -0.02 5.47 16 22 C -0.02 -1.41 5.49 84.83 0.47 -0.95 16 23 N -0.92 -57.62 13.67 21.61 0.30 -57.32 16 24 Si 1.02 42.87 29.55 68.60 2.03 44.90 16 25 H -0.25 -9.96 7.11 99.48 0.71 -9.25 16 26 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 27 H -0.26 -10.07 7.11 99.48 0.71 -9.37 16 28 C -0.18 -8.04 9.65 22.39 0.22 -7.82 16 29 H 0.03 0.77 7.22 -2.39 -0.02 0.75 16 30 H 0.07 1.25 8.14 -2.38 -0.02 1.23 16 31 H 0.06 1.63 5.51 -2.39 -0.01 1.61 16 32 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 33 H 0.07 0.68 8.14 -2.38 -0.02 0.66 16 34 H 0.08 0.91 5.32 -2.38 -0.01 0.90 16 35 H 0.06 1.32 5.51 -2.39 -0.01 1.31 16 36 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 37 H 0.07 0.80 8.14 -2.38 -0.02 0.78 16 38 H 0.43 2.62 9.10 -74.05 -0.67 1.94 16 39 H 0.41 10.00 8.15 -92.71 -0.76 9.25 16 40 H 0.10 2.38 8.09 -2.38 -0.02 2.36 16 41 H 0.06 1.83 8.08 -2.39 -0.02 1.81 16 42 H 0.15 3.13 8.06 -2.91 -0.02 3.10 16 43 H 0.15 3.56 8.06 -2.91 -0.02 3.53 16 44 H 0.12 5.16 5.64 -2.91 -0.02 5.15 16 45 H 0.27 15.61 8.31 -92.71 -0.77 14.84 16 46 H 0.10 4.57 8.06 -2.91 -0.02 4.54 16 Total: -1.00 -80.08 376.34 4.35 -75.72 By element: Atomic # 1 Polarization: 33.83 SS G_CDS: -0.39 Total: 33.44 kcal Atomic # 6 Polarization: -28.21 SS G_CDS: 5.16 Total: -23.05 kcal Atomic # 7 Polarization: -75.82 SS G_CDS: -2.01 Total: -77.83 kcal Atomic # 8 Polarization: -52.75 SS G_CDS: -0.43 Total: -53.18 kcal Atomic # 14 Polarization: 42.87 SS G_CDS: 2.03 Total: 44.90 kcal Total: -80.08 4.35 -75.72 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001602852924.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.491 kcal (2) G-P(sol) polarization free energy of solvation -80.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds