Wall clock time and date at job start Tue Mar 31 2020 18:37:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47428 * 2 1 4 4 C 1.53009 * 109.46800 * 119.99731 * 2 1 3 5 5 C 1.52996 * 109.47130 * 299.99686 * 4 2 1 6 6 N 1.46500 * 109.47128 * 179.97438 * 5 4 2 7 7 C 1.34774 * 120.00119 * 180.02562 * 6 5 4 8 8 O 1.21282 * 120.00304 * 0.02562 * 7 6 5 9 9 C 1.50704 * 120.00135 * 180.02562 * 7 6 5 10 10 C 1.50699 * 109.47208 * 180.02562 * 9 7 6 11 11 C 1.38328 * 119.96230 * 269.97915 * 10 9 7 12 12 C 1.38281 * 120.13505 * 180.02562 * 11 10 9 13 13 C 1.38120 * 120.06679 * 359.68445 * 12 11 10 14 14 C 1.38852 * 119.93490 * 0.58817 * 13 12 11 15 15 O 1.35752 * 120.07221 * 179.70368 * 14 13 12 16 16 C 1.34829 * 116.99954 * 354.17311 * 15 14 13 17 17 H 1.07998 * 119.99999 * 5.03596 * 16 15 14 18 18 C 1.38656 * 119.99670 * 185.03445 * 16 15 14 19 19 N 1.31550 * 120.00275 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 119.99668 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.47063 * 60.00398 * 20 18 16 22 22 H 1.48498 * 109.47240 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.47319 * 300.00306 * 20 18 16 24 24 C 1.38073 * 119.96534 * 89.99715 * 10 9 7 25 25 C 1.50699 * 109.47296 * 239.99727 * 2 1 3 26 26 O 1.20828 * 119.99775 * 240.00641 * 25 2 1 27 27 O 1.34226 * 120.00020 * 60.00223 * 25 2 1 28 28 H 1.09001 * 109.47146 * 300.00284 * 1 2 3 29 29 H 1.09005 * 109.47104 * 59.99985 * 1 2 3 30 30 H 1.09003 * 109.47307 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.46987 * 179.97438 * 3 2 1 32 32 H 1.08996 * 109.46859 * 299.99902 * 3 2 1 33 33 H 1.09001 * 109.47189 * 59.99743 * 3 2 1 34 34 H 1.09002 * 109.46549 * 179.97438 * 4 2 1 35 35 H 1.08998 * 109.47227 * 60.00383 * 4 2 1 36 36 H 1.09008 * 109.46644 * 60.00251 * 5 4 2 37 37 H 1.08998 * 109.47635 * 300.00447 * 5 4 2 38 38 H 0.97001 * 119.99420 * 0.02562 * 6 5 4 39 39 H 1.09002 * 109.46571 * 59.99894 * 9 7 6 40 40 H 1.08992 * 109.46782 * 300.00158 * 9 7 6 41 41 H 1.08001 * 119.93314 * 0.02562 * 11 10 9 42 42 H 1.07993 * 119.96315 * 179.97438 * 12 11 10 43 43 H 1.08001 * 120.03256 * 180.31909 * 13 12 11 44 44 H 0.96999 * 119.99936 * 179.97438 * 19 18 16 45 45 H 1.07996 * 120.03547 * 0.02562 * 24 10 9 46 46 H 0.96699 * 117.00129 * 180.02562 * 27 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7212 1.2494 5 6 1.5300 0.0001 2.4985 6 7 2.0177 -0.6908 3.6947 7 6 1.6916 -0.2306 4.9188 8 8 0.9940 0.7552 5.0301 9 6 2.1938 -0.9411 6.1494 10 6 1.6904 -0.2314 7.3798 11 6 2.4378 0.7863 7.9447 12 6 1.9795 1.4396 9.0741 13 6 0.7703 1.0819 9.6376 14 6 0.0204 0.0570 9.0761 15 8 -1.1656 -0.3009 9.6312 16 6 -1.5016 0.2937 10.7937 17 1 -0.8784 1.0770 11.1995 18 6 -2.6471 -0.1003 11.4682 19 7 -3.4059 -1.0546 10.9743 20 14 -3.1122 0.7231 13.0792 21 1 -3.3116 2.1771 12.8524 22 1 -4.3695 0.1252 13.5958 23 1 -2.0249 0.5213 14.0703 24 6 0.4838 -0.5978 7.9421 25 6 2.0323 -0.7105 -1.2304 26 8 2.7269 -1.6929 -1.1194 27 8 1.7081 -0.2519 -2.4495 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 3.1300 1.4424 0.0005 32 1 1.6768 1.9563 -0.8900 33 1 1.6767 1.9564 0.8900 34 1 3.1299 -0.7216 1.2491 35 1 1.6766 -1.7489 1.2494 36 1 0.4399 0.0001 2.4984 37 1 1.8932 1.0278 2.4985 38 1 2.5754 -1.4795 3.6057 39 1 3.2839 -0.9407 6.1496 40 1 1.8309 -1.9688 6.1491 41 1 3.3813 1.0712 7.5029 42 1 2.5655 2.2334 9.5131 43 1 0.4105 1.5959 10.5166 44 1 -4.2071 -1.3305 11.4463 45 1 -0.0989 -1.3929 7.5009 46 1 2.0536 -0.7411 -3.2088 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001602939544.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:37:04 Heat of formation + Delta-G solvation = -145.334957 kcal Electronic energy + Delta-G solvation = -27685.684928 eV Core-core repulsion = 23540.636246 eV Total energy + Delta-G solvation = -4145.048682 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.09033 -39.79298 -38.76519 -37.47587 -36.51868 -36.35058 -34.34440 -32.35879 -31.96347 -29.60138 -29.00320 -27.90557 -26.92918 -25.45371 -25.12598 -23.20437 -21.62272 -21.16541 -20.35351 -19.62449 -18.33142 -17.62628 -17.17106 -16.92664 -16.74907 -16.25770 -15.81477 -15.67875 -15.08066 -14.77155 -14.50141 -14.27726 -14.16066 -14.10429 -13.61878 -13.56266 -13.28479 -13.26131 -12.90861 -12.56985 -12.40583 -12.34872 -12.03387 -11.91966 -11.89807 -11.71886 -11.49699 -11.48388 -11.26619 -11.21098 -10.78197 -10.75072 -10.72666 -10.56353 -10.41730 -9.71914 -9.27986 -9.09935 -8.77594 -7.99908 -7.15170 -6.38316 -3.97269 1.74356 2.14951 2.45075 2.49457 2.80698 3.16804 3.17326 3.20821 3.23843 4.01905 4.11707 4.23043 4.30822 4.60706 4.70668 4.81586 4.85226 4.95806 5.15094 5.16733 5.17861 5.19412 5.27879 5.30946 5.36228 5.46894 5.52852 5.56213 5.64255 5.72876 5.80833 5.81671 5.85694 5.99780 6.02753 6.24170 6.36765 6.40506 6.72548 6.98534 7.13393 7.33359 7.41906 7.43056 7.47461 7.50878 7.89749 8.06806 8.34401 9.07375 9.78833 10.79962 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.021370 B = 0.001858 C = 0.001784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1309.961873 B =15062.748878 C =15689.854025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.047 4.047 3 C -0.148 4.148 4 C -0.115 4.115 5 C 0.117 3.883 6 N -0.740 5.740 7 C 0.514 3.486 8 O -0.518 6.518 9 C -0.094 4.094 10 C -0.033 4.033 11 C -0.196 4.196 12 C -0.075 4.075 13 C -0.231 4.231 14 C 0.154 3.846 15 O -0.180 6.180 16 C -0.390 4.390 17 H 0.091 0.909 18 C 0.038 3.962 19 N -0.865 5.865 20 Si 0.940 3.060 21 H -0.270 1.270 22 H -0.278 1.278 23 H -0.270 1.270 24 C -0.174 4.174 25 C 0.489 3.511 26 O -0.514 6.514 27 O -0.513 6.513 28 H 0.081 0.919 29 H 0.072 0.928 30 H 0.063 0.937 31 H 0.062 0.938 32 H 0.072 0.928 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.081 0.919 36 H 0.073 0.927 37 H 0.071 0.929 38 H 0.399 0.601 39 H 0.098 0.902 40 H 0.099 0.901 41 H 0.102 0.898 42 H 0.107 0.893 43 H 0.126 0.874 44 H 0.269 0.731 45 H 0.114 0.886 46 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.620 0.926 -23.042 26.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.049 4.049 3 C -0.205 4.205 4 C -0.152 4.152 5 C -0.007 4.007 6 N -0.394 5.394 7 C 0.300 3.700 8 O -0.392 6.392 9 C -0.134 4.134 10 C -0.034 4.034 11 C -0.215 4.215 12 C -0.093 4.093 13 C -0.250 4.250 14 C 0.101 3.899 15 O -0.084 6.084 16 C -0.467 4.467 17 H 0.108 0.892 18 C -0.166 4.166 19 N -0.500 5.500 20 Si 0.765 3.235 21 H -0.195 1.195 22 H -0.203 1.203 23 H -0.196 1.196 24 C -0.194 4.194 25 C 0.331 3.669 26 O -0.401 6.401 27 O -0.324 6.324 28 H 0.100 0.900 29 H 0.091 0.909 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.091 0.909 33 H 0.099 0.901 34 H 0.098 0.902 35 H 0.099 0.901 36 H 0.091 0.909 37 H 0.090 0.910 38 H 0.233 0.767 39 H 0.116 0.884 40 H 0.118 0.882 41 H 0.120 0.880 42 H 0.125 0.875 43 H 0.144 0.856 44 H 0.079 0.921 45 H 0.132 0.868 46 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges 11.724 1.329 -22.585 25.481 hybrid contribution 0.331 -0.318 0.155 0.484 sum 12.055 1.011 -22.431 25.485 Atomic orbital electron populations 1.22000 0.91047 1.03358 1.04226 1.20402 0.98353 0.96816 0.89316 1.21991 1.01666 0.92687 1.04197 1.21717 1.02146 0.99967 0.91409 1.21420 0.99865 0.96426 0.82952 1.46005 1.55200 1.32690 1.05518 1.20767 0.80249 0.84832 0.84128 1.90760 1.36262 1.25717 1.86486 1.20591 1.02020 1.00114 0.90659 1.18660 0.94419 0.96306 0.93967 1.20348 1.01072 1.00557 0.99571 1.20675 0.95290 0.98068 0.95315 1.21168 0.97338 1.02158 1.04344 1.19280 0.86204 0.92111 0.92310 1.83976 1.28933 1.59627 1.35824 1.21264 1.09449 1.18823 0.97150 0.89196 1.25269 0.95427 0.96549 0.99323 1.70030 1.14136 1.27130 1.38729 0.85793 0.78267 0.79092 0.80328 1.19547 1.20340 1.19557 1.19947 0.97127 1.04037 0.98260 1.23431 0.76617 0.82115 0.84760 1.90731 1.35895 1.26205 1.87307 1.84528 1.72196 1.58923 1.16793 0.90020 0.90915 0.91770 0.91865 0.90922 0.90075 0.90160 0.90077 0.90927 0.91037 0.76669 0.88380 0.88226 0.87960 0.87504 0.85648 0.92078 0.86843 0.73173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.91 8.05 37.16 0.30 -0.61 16 2 C -0.05 -0.31 0.74 -155.66 -0.11 -0.43 16 3 C -0.15 -0.85 8.05 37.16 0.30 -0.55 16 4 C -0.11 -0.81 3.67 -26.73 -0.10 -0.91 16 5 C 0.12 1.05 4.97 -4.04 -0.02 1.03 16 6 N -0.74 -7.33 5.56 -60.29 -0.33 -7.66 16 7 C 0.51 7.31 7.82 -10.98 -0.09 7.22 16 8 O -0.52 -9.96 16.03 5.56 0.09 -9.87 16 9 C -0.09 -1.24 5.83 -29.03 -0.17 -1.41 16 10 C -0.03 -0.61 4.37 -104.65 -0.46 -1.07 16 11 C -0.20 -3.59 9.70 -39.53 -0.38 -3.98 16 12 C -0.08 -1.47 10.04 -39.61 -0.40 -1.86 16 13 C -0.23 -5.28 9.17 -39.40 -0.36 -5.64 16 14 C 0.15 3.91 6.65 -39.11 -0.26 3.65 16 15 O -0.18 -5.31 9.76 0.05 0.00 -5.31 16 16 C -0.39 -11.22 9.49 30.89 0.29 -10.93 16 17 H 0.09 2.39 5.21 -52.49 -0.27 2.12 16 18 C 0.04 1.07 5.49 -17.52 -0.10 0.98 16 19 N -0.86 -25.88 13.67 55.48 0.76 -25.12 16 20 Si 0.94 20.97 29.55 -169.99 -5.02 15.95 16 21 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 22 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 23 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 24 C -0.17 -3.87 9.65 -39.39 -0.38 -4.25 16 25 C 0.49 3.75 6.92 36.01 0.25 4.00 16 26 O -0.51 -5.47 16.74 -18.75 -0.31 -5.78 16 27 O -0.51 -2.78 13.23 -39.25 -0.52 -3.30 16 28 H 0.08 0.51 6.43 -51.93 -0.33 0.18 16 29 H 0.07 0.40 8.11 -51.93 -0.42 -0.02 16 30 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.07 0.38 8.11 -51.93 -0.42 -0.05 16 33 H 0.08 0.47 6.43 -51.93 -0.33 0.13 16 34 H 0.08 0.57 8.10 -51.93 -0.42 0.15 16 35 H 0.08 0.60 8.10 -51.93 -0.42 0.18 16 36 H 0.07 0.72 6.43 -51.92 -0.33 0.39 16 37 H 0.07 0.67 6.43 -51.93 -0.33 0.33 16 38 H 0.40 2.76 8.47 -40.82 -0.35 2.41 16 39 H 0.10 0.99 8.09 -51.93 -0.42 0.57 16 40 H 0.10 1.13 8.08 -51.93 -0.42 0.71 16 41 H 0.10 1.58 8.06 -52.49 -0.42 1.15 16 42 H 0.11 1.75 8.06 -52.49 -0.42 1.32 16 43 H 0.13 2.84 5.64 -52.49 -0.30 2.55 16 44 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 45 H 0.11 2.44 8.06 -52.49 -0.42 2.02 16 46 H 0.41 0.63 9.10 45.56 0.41 1.04 16 LS Contribution 387.97 15.07 5.85 5.85 Total: -1.00 -37.58 387.97 -6.79 -44.37 By element: Atomic # 1 Polarization: 11.24 SS G_CDS: -5.61 Total: 5.63 kcal Atomic # 6 Polarization: -13.07 SS G_CDS: -1.68 Total: -14.75 kcal Atomic # 7 Polarization: -33.20 SS G_CDS: 0.42 Total: -32.78 kcal Atomic # 8 Polarization: -23.51 SS G_CDS: -0.74 Total: -24.26 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -37.58 -6.79 -44.37 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001602939544.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.970 kcal (2) G-P(sol) polarization free energy of solvation -37.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.365 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds