Wall clock time and date at job start Tue Mar 31 2020 18:37:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47428 * 2 1 4 4 C 1.53009 * 109.46800 * 119.99731 * 2 1 3 5 5 C 1.52996 * 109.47130 * 299.99686 * 4 2 1 6 6 N 1.46500 * 109.47128 * 179.97438 * 5 4 2 7 7 C 1.34774 * 120.00119 * 180.02562 * 6 5 4 8 8 O 1.21282 * 120.00304 * 0.02562 * 7 6 5 9 9 C 1.50704 * 120.00135 * 180.02562 * 7 6 5 10 10 C 1.50699 * 109.47208 * 180.02562 * 9 7 6 11 11 C 1.38328 * 119.96230 * 269.97915 * 10 9 7 12 12 C 1.38281 * 120.13505 * 180.02562 * 11 10 9 13 13 C 1.38120 * 120.06679 * 359.68445 * 12 11 10 14 14 C 1.38852 * 119.93490 * 0.58817 * 13 12 11 15 15 O 1.35752 * 120.07221 * 179.70368 * 14 13 12 16 16 C 1.34829 * 116.99954 * 354.17311 * 15 14 13 17 17 H 1.07998 * 119.99999 * 5.03596 * 16 15 14 18 18 C 1.38656 * 119.99670 * 185.03445 * 16 15 14 19 19 N 1.31550 * 120.00275 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 119.99668 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.47063 * 60.00398 * 20 18 16 22 22 H 1.48498 * 109.47240 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.47319 * 300.00306 * 20 18 16 24 24 C 1.38073 * 119.96534 * 89.99715 * 10 9 7 25 25 C 1.50699 * 109.47296 * 239.99727 * 2 1 3 26 26 O 1.20828 * 119.99775 * 240.00641 * 25 2 1 27 27 O 1.34226 * 120.00020 * 60.00223 * 25 2 1 28 28 H 1.09001 * 109.47146 * 300.00284 * 1 2 3 29 29 H 1.09005 * 109.47104 * 59.99985 * 1 2 3 30 30 H 1.09003 * 109.47307 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.46987 * 179.97438 * 3 2 1 32 32 H 1.08996 * 109.46859 * 299.99902 * 3 2 1 33 33 H 1.09001 * 109.47189 * 59.99743 * 3 2 1 34 34 H 1.09002 * 109.46549 * 179.97438 * 4 2 1 35 35 H 1.08998 * 109.47227 * 60.00383 * 4 2 1 36 36 H 1.09008 * 109.46644 * 60.00251 * 5 4 2 37 37 H 1.08998 * 109.47635 * 300.00447 * 5 4 2 38 38 H 0.97001 * 119.99420 * 0.02562 * 6 5 4 39 39 H 1.09002 * 109.46571 * 59.99894 * 9 7 6 40 40 H 1.08992 * 109.46782 * 300.00158 * 9 7 6 41 41 H 1.08001 * 119.93314 * 0.02562 * 11 10 9 42 42 H 1.07993 * 119.96315 * 179.97438 * 12 11 10 43 43 H 1.08001 * 120.03256 * 180.31909 * 13 12 11 44 44 H 0.96999 * 119.99936 * 179.97438 * 19 18 16 45 45 H 1.07996 * 120.03547 * 0.02562 * 24 10 9 46 46 H 0.96699 * 117.00129 * 180.02562 * 27 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7212 1.2494 5 6 1.5300 0.0001 2.4985 6 7 2.0177 -0.6908 3.6947 7 6 1.6916 -0.2306 4.9188 8 8 0.9940 0.7552 5.0301 9 6 2.1938 -0.9411 6.1494 10 6 1.6904 -0.2314 7.3798 11 6 2.4378 0.7863 7.9447 12 6 1.9795 1.4396 9.0741 13 6 0.7703 1.0819 9.6376 14 6 0.0204 0.0570 9.0761 15 8 -1.1656 -0.3009 9.6312 16 6 -1.5016 0.2937 10.7937 17 1 -0.8784 1.0770 11.1995 18 6 -2.6471 -0.1003 11.4682 19 7 -3.4059 -1.0546 10.9743 20 14 -3.1122 0.7231 13.0792 21 1 -3.3116 2.1771 12.8524 22 1 -4.3695 0.1252 13.5958 23 1 -2.0249 0.5213 14.0703 24 6 0.4838 -0.5978 7.9421 25 6 2.0323 -0.7105 -1.2304 26 8 2.7269 -1.6929 -1.1194 27 8 1.7081 -0.2519 -2.4495 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 3.1300 1.4424 0.0005 32 1 1.6768 1.9563 -0.8900 33 1 1.6767 1.9564 0.8900 34 1 3.1299 -0.7216 1.2491 35 1 1.6766 -1.7489 1.2494 36 1 0.4399 0.0001 2.4984 37 1 1.8932 1.0278 2.4985 38 1 2.5754 -1.4795 3.6057 39 1 3.2839 -0.9407 6.1496 40 1 1.8309 -1.9688 6.1491 41 1 3.3813 1.0712 7.5029 42 1 2.5655 2.2334 9.5131 43 1 0.4105 1.5959 10.5166 44 1 -4.2071 -1.3305 11.4463 45 1 -0.0989 -1.3929 7.5009 46 1 2.0536 -0.7411 -3.2088 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001602939544.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:37:03 Heat of formation + Delta-G solvation = -172.712273 kcal Electronic energy + Delta-G solvation = -27686.872097 eV Core-core repulsion = 23540.636246 eV Total energy + Delta-G solvation = -4146.235851 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.68672 -41.07510 -40.35323 -38.37773 -37.89366 -37.06868 -35.26988 -34.32937 -33.45137 -30.95832 -30.25644 -28.37870 -28.20835 -27.21370 -26.00632 -23.97894 -23.23505 -22.65282 -21.50625 -20.33704 -19.45883 -18.89913 -18.76293 -17.89601 -17.74551 -16.93921 -16.78365 -16.67303 -16.52319 -16.22287 -16.08030 -15.49389 -15.39957 -15.12461 -14.79557 -14.69169 -14.36715 -14.30955 -14.06711 -13.95538 -13.57836 -13.46303 -12.94116 -12.94015 -12.76737 -12.59058 -12.57347 -12.43952 -12.37253 -12.36365 -12.20110 -12.11741 -12.01869 -11.90948 -11.35645 -11.19286 -10.93509 -10.77464 -10.02958 -9.61614 -8.95933 -8.45709 -6.14251 0.54227 0.77876 1.15965 1.34481 1.45923 1.51207 1.71306 1.94308 2.18767 2.34845 2.86913 3.19732 3.46138 3.56518 3.70642 3.77178 3.84530 4.09495 4.12491 4.21025 4.21860 4.32773 4.34215 4.47143 4.58021 4.60990 4.68086 4.72337 4.75988 4.80420 4.83330 4.93015 4.95107 5.04362 5.10222 5.14419 5.28722 5.30550 5.33066 5.49987 5.58175 5.67152 5.74804 5.77623 6.04092 6.25786 6.60800 6.96222 6.98643 7.33777 7.80617 8.77631 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.021370 B = 0.001858 C = 0.001784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1309.961873 B =15062.748878 C =15689.854025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.048 4.048 3 C -0.146 4.146 4 C -0.104 4.104 5 C 0.117 3.883 6 N -0.719 5.719 7 C 0.514 3.486 8 O -0.577 6.577 9 C -0.092 4.092 10 C -0.026 4.026 11 C -0.180 4.180 12 C -0.074 4.074 13 C -0.247 4.247 14 C 0.110 3.890 15 O -0.235 6.235 16 C -0.414 4.414 17 H 0.100 0.900 18 C -0.025 4.025 19 N -0.922 5.922 20 Si 1.020 2.980 21 H -0.259 1.259 22 H -0.271 1.271 23 H -0.256 1.256 24 C -0.193 4.193 25 C 0.494 3.506 26 O -0.547 6.547 27 O -0.508 6.508 28 H 0.077 0.923 29 H 0.079 0.921 30 H 0.061 0.939 31 H 0.066 0.934 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.085 0.915 35 H 0.079 0.921 36 H 0.062 0.938 37 H 0.071 0.929 38 H 0.417 0.583 39 H 0.144 0.856 40 H 0.121 0.879 41 H 0.148 0.852 42 H 0.145 0.855 43 H 0.117 0.883 44 H 0.272 0.728 45 H 0.106 0.894 46 H 0.427 0.573 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.568 1.840 -24.220 28.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.049 4.049 3 C -0.203 4.203 4 C -0.142 4.142 5 C -0.006 4.006 6 N -0.373 5.373 7 C 0.302 3.698 8 O -0.456 6.456 9 C -0.132 4.132 10 C -0.026 4.026 11 C -0.199 4.199 12 C -0.092 4.092 13 C -0.266 4.266 14 C 0.061 3.939 15 O -0.142 6.142 16 C -0.490 4.490 17 H 0.117 0.883 18 C -0.222 4.222 19 N -0.560 5.560 20 Si 0.839 3.161 21 H -0.183 1.183 22 H -0.195 1.195 23 H -0.180 1.180 24 C -0.213 4.213 25 C 0.338 3.662 26 O -0.438 6.438 27 O -0.321 6.321 28 H 0.096 0.904 29 H 0.098 0.902 30 H 0.080 0.920 31 H 0.085 0.915 32 H 0.098 0.902 33 H 0.098 0.902 34 H 0.104 0.896 35 H 0.097 0.903 36 H 0.080 0.920 37 H 0.089 0.911 38 H 0.255 0.745 39 H 0.162 0.838 40 H 0.139 0.861 41 H 0.166 0.834 42 H 0.163 0.837 43 H 0.135 0.865 44 H 0.081 0.919 45 H 0.124 0.876 46 H 0.289 0.711 Dipole moment (debyes) X Y Z Total from point charges 14.750 2.224 -23.846 28.127 hybrid contribution -0.318 -0.586 0.206 0.697 sum 14.432 1.638 -23.640 27.745 Atomic orbital electron populations 1.21991 0.90800 1.03270 1.04442 1.20410 0.98503 0.97204 0.88822 1.21981 1.01854 0.91971 1.04486 1.21600 1.02310 0.99573 0.90692 1.21463 0.99314 0.96654 0.83168 1.45830 1.54136 1.32729 1.04619 1.20876 0.79503 0.84070 0.85379 1.90754 1.39079 1.28436 1.87346 1.20711 1.04653 1.00210 0.87586 1.19208 0.92482 0.95885 0.95042 1.20984 1.02088 0.98643 0.98154 1.21136 0.93983 0.98659 0.95435 1.21293 0.98795 1.01937 1.04623 1.19893 0.86219 0.93993 0.93839 1.83935 1.31574 1.61677 1.36976 1.21783 1.10223 1.19418 0.97613 0.88260 1.26620 0.94941 0.97208 1.03459 1.70183 1.15166 1.29632 1.41063 0.84636 0.78323 0.78196 0.74956 1.18310 1.19506 1.18019 1.20230 0.98848 1.04278 0.97907 1.23518 0.75790 0.81426 0.85477 1.90722 1.37542 1.27658 1.87833 1.84490 1.71845 1.58931 1.16865 0.90369 0.90157 0.92026 0.91537 0.90248 0.90207 0.89634 0.90272 0.92021 0.91070 0.74543 0.83802 0.86135 0.83441 0.83700 0.86479 0.91872 0.87597 0.71138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.65 8.05 71.98 0.58 -1.07 16 2 C -0.05 -0.56 0.74 -52.93 -0.04 -0.59 16 3 C -0.15 -1.40 8.05 71.98 0.58 -0.82 16 4 C -0.10 -1.29 3.67 30.60 0.11 -1.18 16 5 C 0.12 1.91 4.97 86.38 0.43 2.34 16 6 N -0.72 -12.37 5.56 -463.06 -2.57 -14.94 16 7 C 0.51 13.43 7.82 87.66 0.69 14.11 16 8 O -0.58 -21.69 16.03 -3.04 -0.05 -21.74 16 9 C -0.09 -2.11 5.83 29.10 0.17 -1.94 16 10 C -0.03 -0.89 4.37 -19.88 -0.09 -0.98 16 11 C -0.18 -5.93 9.70 22.30 0.22 -5.71 16 12 C -0.07 -2.72 10.04 22.25 0.22 -2.50 16 13 C -0.25 -11.50 9.17 22.39 0.21 -11.30 16 14 C 0.11 5.87 6.65 22.58 0.15 6.02 16 15 O -0.23 -14.85 9.76 -22.74 -0.22 -15.08 16 16 C -0.41 -25.15 9.49 67.92 0.64 -24.51 16 17 H 0.10 5.55 5.21 -2.91 -0.02 5.53 16 18 C -0.03 -1.48 5.49 84.83 0.47 -1.02 16 19 N -0.92 -58.25 13.67 21.61 0.30 -57.95 16 20 Si 1.02 44.19 29.55 68.60 2.03 46.22 16 21 H -0.26 -10.58 7.11 99.48 0.71 -9.87 16 22 H -0.27 -11.20 7.11 99.48 0.71 -10.50 16 23 H -0.26 -10.35 7.11 99.48 0.71 -9.65 16 24 C -0.19 -8.80 9.65 22.39 0.22 -8.58 16 25 C 0.49 6.79 6.92 71.24 0.49 7.28 16 26 O -0.55 -10.92 16.74 21.96 0.37 -10.55 16 27 O -0.51 -4.49 13.23 -51.38 -0.68 -5.17 16 28 H 0.08 0.94 6.43 -2.39 -0.02 0.92 16 29 H 0.08 0.77 8.11 -2.38 -0.02 0.75 16 30 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 32 H 0.08 0.66 8.11 -2.39 -0.02 0.64 16 33 H 0.08 0.80 6.43 -2.39 -0.02 0.79 16 34 H 0.09 1.00 8.10 -2.39 -0.02 0.99 16 35 H 0.08 1.04 8.10 -2.39 -0.02 1.02 16 36 H 0.06 1.18 6.43 -2.38 -0.02 1.17 16 37 H 0.07 1.22 6.43 -2.39 -0.02 1.20 16 38 H 0.42 4.28 8.47 -92.71 -0.79 3.50 16 39 H 0.14 2.04 8.09 -2.39 -0.02 2.02 16 40 H 0.12 2.32 8.08 -2.39 -0.02 2.30 16 41 H 0.15 3.60 8.06 -2.91 -0.02 3.58 16 42 H 0.15 4.16 8.06 -2.91 -0.02 4.14 16 43 H 0.12 5.50 5.64 -2.91 -0.02 5.48 16 44 H 0.27 15.74 8.31 -92.71 -0.77 14.97 16 45 H 0.11 4.81 8.06 -2.91 -0.02 4.79 16 46 H 0.43 0.45 9.10 -74.06 -0.67 -0.23 16 Total: -1.00 -88.61 387.97 3.78 -84.82 By element: Atomic # 1 Polarization: 25.25 SS G_CDS: -0.43 Total: 24.82 kcal Atomic # 6 Polarization: -35.49 SS G_CDS: 5.05 Total: -30.44 kcal Atomic # 7 Polarization: -70.61 SS G_CDS: -2.28 Total: -72.89 kcal Atomic # 8 Polarization: -51.95 SS G_CDS: -0.58 Total: -52.53 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 2.03 Total: 46.22 kcal Total: -88.61 3.78 -84.82 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001602939544.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.888 kcal (2) G-P(sol) polarization free energy of solvation -88.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -176.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.824 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds