Wall clock time and date at job start Tue Mar 31 2020 18:16:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53006 * 109.46951 * 2 1 4 4 C 1.50700 * 109.47014 * 119.99473 * 2 1 3 5 5 C 1.38166 * 120.03231 * 300.00380 * 4 2 1 6 6 C 1.38243 * 120.05858 * 180.02562 * 5 4 2 7 7 C 1.38291 * 120.11196 * 359.97438 * 6 5 4 8 8 C 1.38127 * 120.05415 * 359.97438 * 7 6 5 9 9 C 1.38713 * 120.02585 * 119.96112 * 4 2 1 10 10 O 1.35900 * 120.05666 * 0.04045 * 9 4 2 11 11 C 1.42903 * 117.00033 * 173.88560 * 10 9 4 12 12 C 1.50703 * 109.47021 * 184.35979 * 11 10 9 13 13 O 1.21294 * 119.99920 * 5.12473 * 12 11 10 14 14 N 1.34776 * 119.99853 * 185.11303 * 12 11 10 15 15 C 1.37097 * 120.00202 * 354.71598 * 14 12 11 16 16 H 1.07997 * 119.99871 * 323.38672 * 15 14 12 17 17 C 1.38947 * 120.00020 * 143.38456 * 15 14 12 18 18 N 1.31411 * 119.99623 * 159.61716 * 17 15 14 19 19 Si 1.86796 * 120.00138 * 339.62396 * 17 15 14 20 20 H 1.48507 * 109.47423 * 95.51954 * 19 17 15 21 21 H 1.48500 * 109.47115 * 215.51814 * 19 17 15 22 22 H 1.48492 * 109.47264 * 335.51917 * 19 17 15 23 23 C 1.46502 * 119.99839 * 174.70993 * 14 12 11 24 24 C 1.52997 * 109.47026 * 90.00400 * 23 14 12 25 25 C 1.50697 * 109.46991 * 179.97438 * 24 23 14 26 26 O 1.20832 * 120.00098 * 0.02562 * 25 24 23 27 27 O 1.34227 * 120.00028 * 179.97438 * 25 24 23 28 28 H 1.08996 * 109.47231 * 60.00635 * 1 2 3 29 29 H 1.09001 * 109.46911 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47602 * 300.00044 * 1 2 3 31 31 H 1.08998 * 109.47602 * 239.99956 * 2 1 3 32 32 H 1.08999 * 109.47362 * 179.97438 * 3 2 1 33 33 H 1.08996 * 109.46635 * 299.99730 * 3 2 1 34 34 H 1.08998 * 109.47004 * 59.99590 * 3 2 1 35 35 H 1.08007 * 119.97058 * 359.97304 * 5 4 2 36 36 H 1.08001 * 119.94599 * 180.02562 * 6 5 4 37 37 H 1.07999 * 119.97557 * 180.02562 * 7 6 5 38 38 H 1.07996 * 120.02803 * 179.72950 * 8 7 6 39 39 H 1.08999 * 109.47356 * 304.36516 * 11 10 9 40 40 H 1.08997 * 109.46884 * 64.36437 * 11 10 9 41 41 H 0.97007 * 119.99848 * 180.02562 * 18 17 15 42 42 H 1.08996 * 109.47226 * 210.00779 * 23 14 12 43 43 H 1.09007 * 109.46661 * 330.00166 * 23 14 12 44 44 H 1.09004 * 109.47131 * 300.00013 * 24 23 14 45 45 H 1.08996 * 109.47121 * 60.00272 * 24 23 14 46 46 H 0.96701 * 117.00438 * 179.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0323 -0.7103 1.2305 5 6 1.6988 -0.2388 2.4857 6 6 2.1597 -0.8896 3.6149 7 6 2.9550 -2.0142 3.4914 8 6 3.2903 -2.4902 2.2389 9 6 2.8291 -1.8386 1.1040 10 8 3.1585 -2.3045 -0.1294 11 6 4.0892 -3.3874 -0.1867 12 6 4.4133 -3.6956 -1.6259 13 8 3.9717 -2.9933 -2.5108 14 7 5.1940 -4.7514 -1.9296 15 6 5.7815 -5.4802 -0.9280 16 1 6.1423 -4.9837 -0.0393 17 6 5.9127 -6.8575 -1.0562 18 7 6.7984 -7.5034 -0.3314 19 14 4.8302 -7.7909 -2.2588 20 1 5.5558 -7.9698 -3.5421 21 1 4.4928 -9.1211 -1.6914 22 1 3.5815 -7.0240 -2.4990 23 6 5.4147 -5.1203 -3.3301 24 6 6.6444 -4.3830 -3.8640 25 6 6.8718 -4.7630 -5.3045 26 8 6.1264 -5.5431 -5.8484 27 8 7.9017 -4.2341 -5.9836 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.8934 -0.5138 -0.8899 32 1 3.1299 1.4426 0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.6765 1.9564 0.8899 35 1 1.0782 0.6396 2.5848 36 1 1.8976 -0.5197 4.5951 37 1 3.3135 -2.5212 4.3751 38 1 3.9150 -3.3660 2.1430 39 1 5.0023 -3.1100 0.3400 40 1 3.6516 -4.2678 0.2837 41 1 6.8902 -8.4649 -0.4212 42 1 5.5765 -6.1958 -3.4014 43 1 4.5408 -4.8445 -3.9205 44 1 6.4825 -3.3074 -3.7928 45 1 7.5181 -4.6588 -3.2737 46 1 8.0072 -4.5082 -6.9049 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001604010199.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:16:29 Heat of formation + Delta-G solvation = -156.675326 kcal Electronic energy + Delta-G solvation = -29176.744015 eV Core-core repulsion = 25031.203578 eV Total energy + Delta-G solvation = -4145.540437 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.62474 -41.31437 -40.50744 -38.46269 -37.32362 -36.93383 -36.21273 -34.29148 -32.88522 -31.04962 -30.82254 -29.04525 -27.95304 -27.06333 -25.94917 -24.34253 -23.03075 -22.27219 -21.29088 -20.80379 -19.47678 -19.09371 -18.83279 -18.13206 -17.86992 -17.18505 -17.14404 -17.00607 -16.56563 -16.35294 -15.82715 -15.59488 -15.29138 -14.97188 -14.74947 -14.74434 -14.52827 -14.42822 -14.19112 -14.02363 -13.64258 -13.43925 -13.25836 -13.03118 -12.90696 -12.86009 -12.77028 -12.63270 -12.49818 -12.18417 -12.04721 -11.94753 -11.85848 -11.72217 -11.48470 -11.43032 -11.20633 -10.60951 -9.97666 -9.72016 -9.04061 -8.62100 -6.25902 0.43515 0.54598 1.09227 1.13604 1.28010 1.36016 1.61317 1.65503 2.09163 2.15334 2.80596 2.86771 2.96539 3.72482 3.74370 3.76672 3.87873 3.96533 4.15284 4.20871 4.23149 4.28923 4.32266 4.36352 4.41381 4.49847 4.55036 4.59502 4.63089 4.78659 4.80295 4.83383 4.93986 4.99917 5.16035 5.23687 5.24329 5.33909 5.42582 5.50552 5.52942 5.64368 5.68082 5.89452 5.95624 6.09997 6.46688 6.82426 6.91825 7.22040 7.56685 8.50359 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.012449 B = 0.003381 C = 0.002890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2248.601827 B = 8280.705248 C = 9687.662711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.058 4.058 3 C -0.134 4.134 4 C -0.120 4.120 5 C -0.080 4.080 6 C -0.154 4.154 7 C -0.090 4.090 8 C -0.220 4.220 9 C 0.101 3.899 10 O -0.315 6.315 11 C 0.073 3.927 12 C 0.480 3.520 13 O -0.598 6.598 14 N -0.463 5.463 15 C -0.351 4.351 16 H 0.102 0.898 17 C 0.050 3.950 18 N -0.877 5.877 19 Si 0.908 3.092 20 H -0.268 1.268 21 H -0.279 1.279 22 H -0.272 1.272 23 C 0.113 3.887 24 C -0.119 4.119 25 C 0.496 3.504 26 O -0.552 6.552 27 O -0.504 6.504 28 H 0.064 0.936 29 H 0.039 0.961 30 H 0.075 0.925 31 H 0.052 0.948 32 H 0.040 0.960 33 H 0.064 0.936 34 H 0.075 0.925 35 H 0.153 0.847 36 H 0.154 0.846 37 H 0.145 0.855 38 H 0.127 0.873 39 H 0.096 0.904 40 H 0.094 0.906 41 H 0.283 0.717 42 H 0.065 0.935 43 H 0.068 0.932 44 H 0.116 0.884 45 H 0.123 0.877 46 H 0.429 0.571 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.003 12.125 4.241 13.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.077 4.077 3 C -0.191 4.191 4 C -0.121 4.121 5 C -0.097 4.097 6 C -0.172 4.172 7 C -0.107 4.107 8 C -0.238 4.238 9 C 0.056 3.944 10 O -0.229 6.229 11 C -0.005 4.005 12 C 0.269 3.731 13 O -0.483 6.483 14 N -0.185 5.185 15 C -0.477 4.477 16 H 0.120 0.880 17 C -0.157 4.157 18 N -0.513 5.513 19 Si 0.735 3.265 20 H -0.195 1.195 21 H -0.205 1.205 22 H -0.197 1.197 23 C -0.010 4.010 24 C -0.158 4.158 25 C 0.340 3.660 26 O -0.443 6.443 27 O -0.317 6.317 28 H 0.083 0.917 29 H 0.058 0.942 30 H 0.094 0.906 31 H 0.070 0.930 32 H 0.059 0.941 33 H 0.083 0.917 34 H 0.094 0.906 35 H 0.171 0.829 36 H 0.171 0.829 37 H 0.163 0.837 38 H 0.145 0.855 39 H 0.114 0.886 40 H 0.112 0.888 41 H 0.094 0.906 42 H 0.083 0.917 43 H 0.087 0.913 44 H 0.134 0.866 45 H 0.141 0.859 46 H 0.291 0.709 Dipole moment (debyes) X Y Z Total from point charges -5.415 12.251 3.926 13.958 hybrid contribution 0.140 -1.639 -1.221 2.049 sum -5.275 10.612 2.705 12.155 Atomic orbital electron populations 1.21790 0.93115 1.01354 1.02906 1.19975 0.96771 0.96391 0.94534 1.21785 1.00342 0.94089 1.02884 1.19495 1.00857 0.94779 0.96923 1.21099 0.98642 0.99900 0.90090 1.21402 0.99610 0.96490 0.99683 1.21254 0.96738 0.96326 0.96423 1.21507 1.06171 1.03014 0.93154 1.19313 0.96812 0.94594 0.83683 1.86054 1.60039 1.49739 1.27047 1.22160 0.93517 0.89760 0.95040 1.20337 0.79238 0.82919 0.90561 1.90578 1.55873 1.51691 1.50160 1.43642 1.42404 1.27576 1.04901 1.19069 1.38359 0.89728 1.00585 0.88001 1.25620 0.95467 0.97140 0.97496 1.69754 1.30029 1.10590 1.40883 0.86448 0.81190 0.79147 0.79721 1.19493 1.20517 1.19689 1.21389 0.97384 0.98628 0.83551 1.21571 1.01366 1.03978 0.88836 1.23276 0.76941 0.76296 0.89494 1.90701 1.47306 1.35251 1.71088 1.84498 1.47622 1.67296 1.32300 0.91657 0.94186 0.90577 0.92968 0.94087 0.91671 0.90597 0.82911 0.82881 0.83683 0.85466 0.88620 0.88785 0.90647 0.91673 0.91310 0.86624 0.85932 0.70888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.92 9.01 71.98 0.65 -2.27 16 2 C -0.06 -1.56 3.06 -11.54 -0.04 -1.60 16 3 C -0.13 -2.89 9.01 71.98 0.65 -2.24 16 4 C -0.12 -3.38 4.79 -19.77 -0.09 -3.47 16 5 C -0.08 -1.70 8.71 22.25 0.19 -1.50 16 6 C -0.15 -3.03 10.04 22.28 0.22 -2.81 16 7 C -0.09 -2.06 10.04 22.26 0.22 -1.84 16 8 C -0.22 -6.47 9.04 22.37 0.20 -6.27 16 9 C 0.10 3.37 6.65 22.51 0.15 3.52 16 10 O -0.32 -12.56 8.44 -73.44 -0.62 -13.18 16 11 C 0.07 2.88 3.93 71.24 0.28 3.16 16 12 C 0.48 22.01 7.69 87.66 0.67 22.68 16 13 O -0.60 -30.24 16.14 15.91 0.26 -29.99 16 14 N -0.46 -21.24 2.20 -635.53 -1.40 -22.64 16 15 C -0.35 -16.81 9.02 84.04 0.76 -16.05 16 16 H 0.10 4.98 7.36 -2.91 -0.02 4.96 16 17 C 0.05 2.47 5.34 84.93 0.45 2.92 16 18 N -0.88 -45.15 13.96 21.66 0.30 -44.84 16 19 Si 0.91 41.37 24.85 68.60 1.70 43.07 16 20 H -0.27 -12.22 6.71 99.48 0.67 -11.55 16 21 H -0.28 -12.31 7.11 99.48 0.71 -11.61 16 22 H -0.27 -12.85 7.11 99.48 0.71 -12.15 16 23 C 0.11 4.98 3.45 86.38 0.30 5.28 16 24 C -0.12 -4.32 6.13 29.85 0.18 -4.13 16 25 C 0.50 16.59 8.33 71.23 0.59 17.18 16 26 O -0.55 -21.89 16.74 21.95 0.37 -21.52 16 27 O -0.50 -12.31 13.42 -51.38 -0.69 -13.00 16 28 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 29 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.08 1.27 7.39 -2.39 -0.02 1.26 16 31 H 0.05 1.81 6.99 -2.39 -0.02 1.79 16 32 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 33 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 34 H 0.08 1.26 7.39 -2.39 -0.02 1.24 16 35 H 0.15 2.30 7.10 -2.91 -0.02 2.28 16 36 H 0.15 1.97 8.06 -2.91 -0.02 1.95 16 37 H 0.15 2.59 8.06 -2.91 -0.02 2.56 16 38 H 0.13 3.76 6.33 -2.91 -0.02 3.74 16 39 H 0.10 3.49 7.32 -2.39 -0.02 3.48 16 40 H 0.09 3.61 7.56 -2.39 -0.02 3.59 16 41 H 0.28 13.71 8.31 -92.70 -0.77 12.94 16 42 H 0.07 3.00 2.95 -2.39 -0.01 3.00 16 43 H 0.07 3.16 7.46 -2.38 -0.02 3.14 16 44 H 0.12 4.04 8.14 -2.39 -0.02 4.02 16 45 H 0.12 4.29 8.14 -2.39 -0.02 4.27 16 46 H 0.43 6.10 9.10 -74.06 -0.67 5.43 16 Total: -1.00 -66.41 381.16 5.62 -60.79 By element: Atomic # 1 Polarization: 28.44 SS G_CDS: 0.30 Total: 28.74 kcal Atomic # 6 Polarization: 7.17 SS G_CDS: 5.40 Total: 12.57 kcal Atomic # 7 Polarization: -66.38 SS G_CDS: -1.10 Total: -67.48 kcal Atomic # 8 Polarization: -77.01 SS G_CDS: -0.69 Total: -77.69 kcal Atomic # 14 Polarization: 41.37 SS G_CDS: 1.70 Total: 43.07 kcal Total: -66.41 5.62 -60.79 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604010199.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.883 kcal (2) G-P(sol) polarization free energy of solvation -66.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds