Wall clock time and date at job start Tue Mar 31 2020 19:22:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47210 * 2 1 4 4 H 1.09002 * 109.47513 * 53.05818 * 3 2 1 5 5 C 1.50701 * 109.47149 * 173.06379 * 3 2 1 6 6 H 1.08001 * 120.00171 * 120.00133 * 5 3 2 7 7 C 1.37872 * 119.99991 * 299.99437 * 5 3 2 8 8 N 1.31516 * 119.99943 * 0.02562 * 7 5 3 9 9 Si 1.86794 * 120.00212 * 180.02562 * 7 5 3 10 10 H 1.48504 * 109.47349 * 89.99924 * 9 7 5 11 11 H 1.48499 * 109.47622 * 210.00199 * 9 7 5 12 12 H 1.48504 * 109.47408 * 330.00409 * 9 7 5 13 13 N 1.46910 * 109.46953 * 293.05990 * 3 2 1 14 14 C 1.36883 * 110.99430 * 104.54405 * 13 3 2 15 15 C 1.38974 * 120.43001 * 240.54621 * 14 13 3 16 16 C 1.48204 * 120.67252 * 0.02562 * 15 14 13 17 17 N 1.33762 * 126.31857 * 0.02562 * 16 15 14 18 18 N 1.28568 * 109.83633 * 179.97438 * 17 16 15 19 19 N 1.28916 * 109.75146 * 359.97438 * 18 17 16 20 20 H 0.96998 * 126.42407 * 179.97438 * 19 18 17 21 21 N 1.32077 * 126.32153 * 179.70919 * 16 15 14 22 22 C 1.41461 * 118.65791 * 179.78891 * 15 14 13 23 23 O 1.21850 * 120.29779 * 180.24591 * 22 15 14 24 24 N 1.34755 * 119.40812 * 0.49747 * 22 15 14 25 25 C 1.46502 * 119.58934 * 179.74966 * 24 22 15 26 26 C 1.34437 * 120.82251 * 359.77200 * 24 22 15 27 27 O 1.21590 * 119.27566 * 179.97438 * 26 24 22 28 28 N 1.34473 * 121.44890 * 359.95207 * 26 24 22 29 29 C 1.46497 * 119.73858 * 180.02562 * 28 26 24 30 30 H 1.08997 * 109.46995 * 294.58873 * 1 2 3 31 31 H 1.09000 * 109.47071 * 54.58698 * 1 2 3 32 32 H 1.09003 * 109.47141 * 174.58499 * 1 2 3 33 33 H 1.09004 * 109.46944 * 119.99907 * 2 1 3 34 34 H 1.08994 * 109.47383 * 239.99317 * 2 1 3 35 35 H 0.97005 * 120.00034 * 180.02562 * 8 7 5 36 36 H 1.00896 * 110.99828 * 228.49519 * 13 3 2 37 37 H 1.09004 * 109.46915 * 270.02392 * 25 24 22 38 38 H 1.08992 * 109.46807 * 30.02141 * 25 24 22 39 39 H 1.08999 * 109.47044 * 150.02712 * 25 24 22 40 40 H 1.08997 * 109.47996 * 264.40055 * 29 28 26 41 41 H 1.09000 * 109.46866 * 24.41078 * 29 28 26 42 42 H 1.09005 * 109.47016 * 144.40335 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5789 1.9910 0.8214 5 6 3.5372 1.4459 0.1716 6 1 4.1670 1.8818 -0.5898 7 6 4.1030 0.8927 1.3006 8 7 3.3361 0.3615 2.2276 9 14 5.9587 0.8976 1.5137 10 1 6.3731 2.1385 2.2164 11 1 6.3684 -0.2845 2.3137 12 1 6.6103 0.8428 0.1804 13 7 1.6917 2.0850 -1.2744 14 6 0.6428 2.9501 -1.1169 15 6 -0.5420 2.7547 -1.8165 16 6 -0.6922 1.6083 -2.7437 17 7 0.2309 0.6771 -3.0081 18 7 -0.2338 -0.1691 -3.8573 19 7 -1.4398 0.1539 -4.1788 20 1 -2.0160 -0.3176 -4.8005 21 7 -1.7642 1.3144 -3.4571 22 6 -1.6036 3.6692 -1.6219 23 8 -2.6571 3.5237 -2.2166 24 7 -1.4376 4.7056 -0.7768 25 6 -2.5324 5.6582 -0.5764 26 6 -0.2796 4.8765 -0.1155 27 8 -0.1602 5.8218 0.6399 28 7 0.7494 4.0248 -0.2709 29 6 1.9943 4.2466 0.4689 30 1 -0.3633 0.4276 0.9345 31 1 -0.3633 0.5955 -0.8375 32 1 -0.3633 -1.0231 -0.0970 33 1 1.8933 -0.5138 0.8900 34 1 1.8934 -0.5139 -0.8899 35 1 3.7341 -0.0274 3.0222 36 1 2.4910 2.5544 -1.6729 37 1 -2.4465 6.4680 -1.3010 38 1 -3.4864 5.1489 -0.7121 39 1 -2.4787 6.0664 0.4328 40 1 2.6989 4.7905 -0.1602 41 1 1.7847 4.8281 1.3667 42 1 2.4255 3.2859 0.7507 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001604013906.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:22:26 Heat of formation + Delta-G solvation = 128.479686 kcal Electronic energy + Delta-G solvation = -31139.650646 eV Core-core repulsion = 26967.520617 eV Total energy + Delta-G solvation = -4172.130029 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.149 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.71701 -42.16476 -39.09545 -38.54405 -35.34593 -35.00287 -33.86760 -32.63147 -32.40374 -31.17592 -30.68079 -27.78060 -27.23973 -26.01963 -24.28725 -23.66434 -23.16941 -22.37736 -21.44824 -20.21901 -19.20585 -18.42083 -17.69700 -17.15118 -16.85278 -16.51933 -16.01002 -15.44576 -15.22910 -15.16160 -14.64658 -14.48710 -14.24649 -13.87051 -13.41901 -13.31579 -12.91038 -12.81924 -12.48899 -12.34644 -12.33963 -11.80657 -11.59772 -11.31652 -11.23560 -11.09882 -10.99945 -10.84473 -10.46443 -10.29437 -10.26914 -10.26073 -10.08417 -9.89204 -9.66057 -9.59547 -9.23727 -8.80494 -8.23469 -7.98964 -6.35244 -4.48881 0.78362 1.53338 1.97485 2.07029 2.61965 2.87436 3.06256 3.12195 3.22228 3.24048 3.72184 4.03669 4.12857 4.30411 4.75020 4.91757 4.97956 5.24948 5.36264 5.41447 5.49063 5.60510 5.62236 5.74635 5.80877 5.99058 6.09825 6.21874 6.22885 6.36037 6.47586 6.55628 6.68839 6.94623 6.98483 7.01642 7.19278 7.32674 7.43735 7.48659 7.63511 7.73918 7.96525 8.05087 8.13454 8.56730 8.71733 9.20047 10.67854 Molecular weight = 335.15amu Principal moments of inertia in cm(-1) A = 0.011316 B = 0.005616 C = 0.004093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2473.694638 B = 4984.326399 C = 6840.009785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.099 4.099 3 C 0.213 3.787 4 H 0.029 0.971 5 C -0.546 4.546 6 H 0.069 0.931 7 C 0.074 3.926 8 N -0.874 5.874 9 Si 0.900 3.100 10 H -0.279 1.279 11 H -0.285 1.285 12 H -0.271 1.271 13 N -0.615 5.615 14 C 0.475 3.525 15 C -0.230 4.230 16 C 0.297 3.703 17 N -0.240 5.240 18 N -0.014 5.014 19 N -0.322 5.322 20 H 0.461 0.539 21 N -0.279 5.279 22 C 0.564 3.436 23 O -0.502 6.502 24 N -0.557 5.557 25 C 0.084 3.916 26 C 0.693 3.307 27 O -0.542 6.542 28 N -0.545 5.545 29 C 0.030 3.970 30 H 0.030 0.970 31 H 0.051 0.949 32 H 0.029 0.971 33 H 0.093 0.907 34 H 0.053 0.947 35 H 0.268 0.732 36 H 0.369 0.631 37 H 0.071 0.929 38 H 0.092 0.908 39 H 0.089 0.911 40 H 0.074 0.926 41 H 0.094 0.906 42 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.039 4.606 -6.385 9.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.138 4.138 3 C 0.110 3.890 4 H 0.047 0.953 5 C -0.584 4.584 6 H 0.087 0.913 7 C -0.132 4.132 8 N -0.510 5.510 9 Si 0.727 3.273 10 H -0.205 1.205 11 H -0.210 1.210 12 H -0.195 1.195 13 N -0.255 5.255 14 C 0.266 3.734 15 C -0.245 4.245 16 C 0.016 3.984 17 N -0.119 5.119 18 N -0.010 5.010 19 N -0.167 5.167 20 H 0.313 0.687 21 N -0.123 5.123 22 C 0.360 3.640 23 O -0.377 6.377 24 N -0.302 5.302 25 C -0.057 4.057 26 C 0.395 3.605 27 O -0.416 6.416 28 N -0.267 5.267 29 C -0.110 4.110 30 H 0.050 0.950 31 H 0.069 0.931 32 H 0.048 0.952 33 H 0.111 0.889 34 H 0.072 0.928 35 H 0.078 0.922 36 H 0.201 0.799 37 H 0.089 0.911 38 H 0.111 0.889 39 H 0.108 0.892 40 H 0.093 0.907 41 H 0.112 0.888 42 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -6.736 4.055 -6.532 10.221 hybrid contribution 0.825 0.647 0.489 1.157 sum -5.911 4.702 -6.042 9.672 Atomic orbital electron populations 1.21990 0.99681 0.99473 0.99884 1.21496 0.91492 0.97927 1.02844 1.19678 0.95939 0.92252 0.81172 0.95336 1.21296 0.90155 1.41301 1.05622 0.91308 1.24904 0.98682 0.94121 0.95467 1.69881 1.35306 1.36803 1.08989 0.86454 0.84498 0.77826 0.78510 1.20464 1.21011 1.19532 1.58344 1.09371 1.26654 1.31125 1.20349 0.93420 0.79389 0.80281 1.16999 0.94369 1.01654 1.11508 1.22008 0.87298 0.94264 0.94824 1.75961 1.24955 1.01153 1.09855 1.78396 0.95295 1.19221 1.08081 1.51098 1.11252 1.20083 1.34246 0.68661 1.79232 1.21261 1.00352 1.11415 1.16448 0.88433 0.80049 0.79065 1.90913 1.27361 1.73179 1.46209 1.46136 1.14619 1.27984 1.41418 1.21841 0.88538 0.91699 1.03632 1.15908 0.80220 0.83117 0.81267 1.90970 1.81192 1.30591 1.38805 1.46507 1.15824 1.23468 1.40864 1.23136 0.81804 1.08898 0.97137 0.95047 0.93051 0.95170 0.88852 0.92819 0.92206 0.79905 0.91081 0.88930 0.89196 0.90741 0.88753 0.83351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.11 9.59 37.16 0.36 -2.75 16 2 C -0.10 -2.15 5.46 -26.73 -0.15 -2.30 16 3 C 0.21 4.34 1.07 -68.86 -0.07 4.26 16 4 H 0.03 0.64 5.57 -51.93 -0.29 0.35 16 5 C -0.55 -11.84 7.20 -34.44 -0.25 -12.08 16 6 H 0.07 1.44 7.38 -52.49 -0.39 1.05 16 7 C 0.07 1.69 5.28 -17.82 -0.09 1.60 16 8 N -0.87 -21.35 11.29 55.43 0.63 -20.72 16 9 Si 0.90 18.31 29.54 -169.99 -5.02 13.29 16 10 H -0.28 -5.64 7.11 56.52 0.40 -5.23 16 11 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 12 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 13 N -0.61 -10.88 4.02 -54.21 -0.22 -11.10 16 14 C 0.47 8.13 5.41 -152.83 -0.83 7.30 16 15 C -0.23 -4.12 5.11 -104.30 -0.53 -4.66 16 16 C 0.30 5.43 6.17 -156.42 -0.96 4.47 16 17 N -0.24 -4.37 9.74 32.10 0.31 -4.05 16 18 N -0.01 -0.22 13.42 60.35 0.81 0.59 16 19 N -0.32 -4.41 8.44 60.35 0.51 -3.90 16 20 H 0.46 4.03 8.96 -331.91 -2.98 1.05 16 21 N -0.28 -4.83 11.63 32.11 0.37 -4.46 16 22 C 0.56 9.93 7.43 -15.04 -0.11 9.81 16 23 O -0.50 -9.57 15.20 5.05 0.08 -9.49 16 24 N -0.56 -8.79 2.95 -131.61 -0.39 -9.17 16 25 C 0.08 1.03 10.09 59.85 0.60 1.64 16 26 C 0.69 11.54 8.11 -87.49 -0.71 10.83 16 27 O -0.54 -9.64 15.19 5.29 0.08 -9.56 16 28 N -0.54 -8.90 2.89 -127.81 -0.37 -9.27 16 29 C 0.03 0.46 9.59 59.85 0.57 1.03 16 30 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.05 1.02 2.71 -51.93 -0.14 0.88 16 32 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.09 2.27 5.91 -51.93 -0.31 1.96 16 34 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 35 H 0.27 6.35 8.31 -40.82 -0.34 6.01 16 36 H 0.37 6.02 7.73 -39.29 -0.30 5.72 16 37 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.09 1.08 7.40 -51.93 -0.38 0.70 16 39 H 0.09 1.04 7.35 -51.93 -0.38 0.65 16 40 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 41 H 0.09 1.43 7.20 -51.93 -0.37 1.06 16 42 H 0.15 2.63 3.07 -51.93 -0.16 2.47 16 LS Contribution 338.44 15.07 5.10 5.10 Total: -1.00 -28.32 338.44 -7.23 -35.55 By element: Atomic # 1 Polarization: 14.98 SS G_CDS: -6.95 Total: 8.03 kcal Atomic # 6 Polarization: 21.33 SS G_CDS: -2.17 Total: 19.16 kcal Atomic # 7 Polarization: -63.73 SS G_CDS: 1.66 Total: -62.08 kcal Atomic # 8 Polarization: -19.21 SS G_CDS: 0.16 Total: -19.05 kcal Atomic # 14 Polarization: 18.31 SS G_CDS: -5.02 Total: 13.29 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -28.32 -7.23 -35.55 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604013906.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.033 kcal (2) G-P(sol) polarization free energy of solvation -28.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 135.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.554 kcal (6) G-S(sol) free energy of system = (1) + (5) 128.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds