Wall clock time and date at job start Tue Mar 31 2020 19:22:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47210 * 2 1 4 4 H 1.09002 * 109.47513 * 53.05818 * 3 2 1 5 5 C 1.50701 * 109.47149 * 173.06379 * 3 2 1 6 6 H 1.08001 * 120.00171 * 120.00133 * 5 3 2 7 7 C 1.37872 * 119.99991 * 299.99437 * 5 3 2 8 8 N 1.31516 * 119.99943 * 0.02562 * 7 5 3 9 9 Si 1.86794 * 120.00212 * 180.02562 * 7 5 3 10 10 H 1.48504 * 109.47349 * 89.99924 * 9 7 5 11 11 H 1.48499 * 109.47622 * 210.00199 * 9 7 5 12 12 H 1.48504 * 109.47408 * 330.00409 * 9 7 5 13 13 N 1.46910 * 109.46953 * 293.05990 * 3 2 1 14 14 C 1.36883 * 110.99430 * 104.54405 * 13 3 2 15 15 C 1.38974 * 120.43001 * 240.54621 * 14 13 3 16 16 C 1.48204 * 120.67252 * 0.02562 * 15 14 13 17 17 N 1.33762 * 126.31857 * 0.02562 * 16 15 14 18 18 N 1.28568 * 109.83633 * 179.97438 * 17 16 15 19 19 N 1.28916 * 109.75146 * 359.97438 * 18 17 16 20 20 H 0.96998 * 126.42407 * 179.97438 * 19 18 17 21 21 N 1.32077 * 126.32153 * 179.70919 * 16 15 14 22 22 C 1.41461 * 118.65791 * 179.78891 * 15 14 13 23 23 O 1.21850 * 120.29779 * 180.24591 * 22 15 14 24 24 N 1.34755 * 119.40812 * 0.49747 * 22 15 14 25 25 C 1.46502 * 119.58934 * 179.74966 * 24 22 15 26 26 C 1.34437 * 120.82251 * 359.77200 * 24 22 15 27 27 O 1.21590 * 119.27566 * 179.97438 * 26 24 22 28 28 N 1.34473 * 121.44890 * 359.95207 * 26 24 22 29 29 C 1.46497 * 119.73858 * 180.02562 * 28 26 24 30 30 H 1.08997 * 109.46995 * 294.58873 * 1 2 3 31 31 H 1.09000 * 109.47071 * 54.58698 * 1 2 3 32 32 H 1.09003 * 109.47141 * 174.58499 * 1 2 3 33 33 H 1.09004 * 109.46944 * 119.99907 * 2 1 3 34 34 H 1.08994 * 109.47383 * 239.99317 * 2 1 3 35 35 H 0.97005 * 120.00034 * 180.02562 * 8 7 5 36 36 H 1.00896 * 110.99828 * 228.49519 * 13 3 2 37 37 H 1.09004 * 109.46915 * 270.02392 * 25 24 22 38 38 H 1.08992 * 109.46807 * 30.02141 * 25 24 22 39 39 H 1.08999 * 109.47044 * 150.02712 * 25 24 22 40 40 H 1.08997 * 109.47996 * 264.40055 * 29 28 26 41 41 H 1.09000 * 109.46866 * 24.41078 * 29 28 26 42 42 H 1.09005 * 109.47016 * 144.40335 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5789 1.9910 0.8214 5 6 3.5372 1.4459 0.1716 6 1 4.1670 1.8818 -0.5898 7 6 4.1030 0.8927 1.3006 8 7 3.3361 0.3615 2.2276 9 14 5.9587 0.8976 1.5137 10 1 6.3731 2.1385 2.2164 11 1 6.3684 -0.2845 2.3137 12 1 6.6103 0.8428 0.1804 13 7 1.6917 2.0850 -1.2744 14 6 0.6428 2.9501 -1.1169 15 6 -0.5420 2.7547 -1.8165 16 6 -0.6922 1.6083 -2.7437 17 7 0.2309 0.6771 -3.0081 18 7 -0.2338 -0.1691 -3.8573 19 7 -1.4398 0.1539 -4.1788 20 1 -2.0160 -0.3176 -4.8005 21 7 -1.7642 1.3144 -3.4571 22 6 -1.6036 3.6692 -1.6219 23 8 -2.6571 3.5237 -2.2166 24 7 -1.4376 4.7056 -0.7768 25 6 -2.5324 5.6582 -0.5764 26 6 -0.2796 4.8765 -0.1155 27 8 -0.1602 5.8218 0.6399 28 7 0.7494 4.0248 -0.2709 29 6 1.9943 4.2466 0.4689 30 1 -0.3633 0.4276 0.9345 31 1 -0.3633 0.5955 -0.8375 32 1 -0.3633 -1.0231 -0.0970 33 1 1.8933 -0.5138 0.8900 34 1 1.8934 -0.5139 -0.8899 35 1 3.7341 -0.0274 3.0222 36 1 2.4910 2.5544 -1.6729 37 1 -2.4465 6.4680 -1.3010 38 1 -3.4864 5.1489 -0.7121 39 1 -2.4787 6.0664 0.4328 40 1 2.6989 4.7905 -0.1602 41 1 1.7847 4.8281 1.3667 42 1 2.4255 3.2859 0.7507 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001604013906.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:22:25 Heat of formation + Delta-G solvation = 109.815406 kcal Electronic energy + Delta-G solvation = -31140.459990 eV Core-core repulsion = 26967.520617 eV Total energy + Delta-G solvation = -4172.939373 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.149 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -44.02292 -43.48402 -40.47681 -39.93650 -36.86711 -36.32117 -35.21712 -34.20712 -33.71114 -32.78750 -32.03954 -29.17531 -28.59192 -27.39064 -25.60009 -25.10551 -24.68193 -23.76583 -22.75083 -21.85779 -20.56141 -19.71555 -19.20232 -18.43427 -18.19117 -17.97815 -17.32292 -16.89707 -16.74187 -16.56479 -15.95571 -15.91583 -15.73852 -15.25988 -14.75070 -14.66466 -14.49417 -14.18045 -13.96103 -13.76930 -13.33803 -13.29413 -12.92603 -12.88784 -12.87371 -12.62752 -12.48951 -12.27665 -12.05732 -11.77319 -11.62222 -11.60614 -11.50098 -11.36633 -11.26041 -10.94013 -10.87856 -10.52068 -9.77233 -9.35565 -8.10699 -6.26936 -0.57457 0.23801 0.69796 0.73742 1.49884 1.51084 1.52998 1.57033 1.63103 1.76483 2.36668 2.45881 2.73016 2.90298 3.19913 3.43790 3.63126 4.00440 4.17091 4.33255 4.40763 4.43377 4.46535 4.52094 4.53694 4.61643 4.63731 4.74357 4.78655 4.85439 4.93436 5.06525 5.22791 5.31276 5.39490 5.59611 5.71338 5.79507 5.94953 5.98372 6.08437 6.22366 6.29609 6.52601 6.75544 6.86060 7.41493 7.44020 8.92202 Molecular weight = 335.15amu Principal moments of inertia in cm(-1) A = 0.011316 B = 0.005616 C = 0.004093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2473.694638 B = 4984.326399 C = 6840.009785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.091 4.091 3 C 0.226 3.774 4 H 0.015 0.985 5 C -0.540 4.540 6 H 0.079 0.921 7 C 0.033 3.967 8 N -0.905 5.905 9 Si 0.953 3.047 10 H -0.274 1.274 11 H -0.296 1.296 12 H -0.267 1.267 13 N -0.610 5.610 14 C 0.477 3.523 15 C -0.238 4.238 16 C 0.285 3.715 17 N -0.264 5.264 18 N -0.013 5.013 19 N -0.290 5.290 20 H 0.481 0.519 21 N -0.293 5.293 22 C 0.565 3.435 23 O -0.519 6.519 24 N -0.554 5.554 25 C 0.079 3.921 26 C 0.693 3.307 27 O -0.553 6.553 28 N -0.542 5.542 29 C 0.034 3.966 30 H 0.023 0.977 31 H 0.057 0.943 32 H 0.034 0.966 33 H 0.067 0.933 34 H 0.043 0.957 35 H 0.264 0.736 36 H 0.378 0.622 37 H 0.089 0.911 38 H 0.098 0.902 39 H 0.098 0.902 40 H 0.100 0.900 41 H 0.095 0.905 42 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.068 5.410 -7.413 11.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.130 4.130 3 C 0.122 3.878 4 H 0.032 0.968 5 C -0.578 4.578 6 H 0.097 0.903 7 C -0.169 4.169 8 N -0.542 5.542 9 Si 0.780 3.220 10 H -0.200 1.200 11 H -0.222 1.222 12 H -0.191 1.191 13 N -0.250 5.250 14 C 0.268 3.732 15 C -0.252 4.252 16 C 0.004 3.996 17 N -0.142 5.142 18 N -0.009 5.009 19 N -0.140 5.140 20 H 0.339 0.661 21 N -0.138 5.138 22 C 0.361 3.639 23 O -0.395 6.395 24 N -0.297 5.297 25 C -0.061 4.061 26 C 0.395 3.605 27 O -0.427 6.427 28 N -0.263 5.263 29 C -0.106 4.106 30 H 0.042 0.958 31 H 0.076 0.924 32 H 0.053 0.947 33 H 0.085 0.915 34 H 0.062 0.938 35 H 0.073 0.927 36 H 0.210 0.790 37 H 0.108 0.892 38 H 0.117 0.883 39 H 0.116 0.884 40 H 0.118 0.882 41 H 0.113 0.887 42 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -6.768 4.875 -7.585 11.274 hybrid contribution 0.751 0.375 0.721 1.106 sum -6.017 5.250 -6.864 10.530 Atomic orbital electron populations 1.21886 0.98678 0.99814 0.99685 1.21335 0.92301 0.98487 1.00902 1.19366 0.95186 0.91490 0.81806 0.96769 1.21562 0.90961 1.39993 1.05268 0.90322 1.25507 1.01602 0.94243 0.95562 1.70000 1.36498 1.38260 1.09480 0.85618 0.80912 0.77260 0.78201 1.20003 1.22248 1.19129 1.58149 1.09830 1.27248 1.29776 1.20175 0.93008 0.79526 0.80530 1.17152 0.94575 1.01834 1.11678 1.22098 0.87597 0.94605 0.95337 1.75944 1.25686 1.01695 1.10885 1.78331 0.95883 1.18848 1.07865 1.51063 1.10829 1.18891 1.33251 0.66110 1.79173 1.21406 1.01443 1.11800 1.16417 0.88076 0.80263 0.79105 1.90899 1.27887 1.73689 1.47016 1.46200 1.15003 1.27956 1.40573 1.22108 0.87676 0.91608 1.04741 1.15929 0.80357 0.82981 0.81211 1.90966 1.81385 1.31030 1.39306 1.46498 1.16177 1.23134 1.40511 1.23083 0.81812 1.07894 0.97779 0.95797 0.92408 0.94729 0.91504 0.93826 0.92681 0.78963 0.89245 0.88345 0.88385 0.88158 0.88651 0.85487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.81 9.59 71.98 0.69 -5.12 16 2 C -0.09 -3.99 5.46 30.59 0.17 -3.83 16 3 C 0.23 9.14 1.07 44.17 0.05 9.19 16 4 H 0.01 0.65 5.57 -2.39 -0.01 0.64 16 5 C -0.54 -23.05 7.20 25.60 0.18 -22.86 16 6 H 0.08 3.15 7.38 -2.91 -0.02 3.13 16 7 C 0.03 1.50 5.28 84.65 0.45 1.95 16 8 N -0.90 -44.79 11.29 21.45 0.24 -44.55 16 9 Si 0.95 37.25 29.54 68.60 2.03 39.27 16 10 H -0.27 -10.45 7.11 99.48 0.71 -9.74 16 11 H -0.30 -12.06 7.11 99.48 0.71 -11.35 16 12 H -0.27 -10.17 7.11 99.48 0.71 -9.46 16 13 N -0.61 -21.05 4.02 -325.41 -1.31 -22.36 16 14 C 0.48 15.87 5.41 132.24 0.72 16.59 16 15 C -0.24 -8.26 5.11 -19.66 -0.10 -8.36 16 16 C 0.28 10.09 6.17 137.30 0.85 10.94 16 17 N -0.26 -9.30 9.74 -52.37 -0.51 -9.81 16 18 N -0.01 -0.40 13.42 37.02 0.50 0.10 16 19 N -0.29 -7.41 8.44 37.02 0.31 -7.09 16 20 H 0.48 7.29 8.96 -340.34 -3.05 4.24 16 21 N -0.29 -9.73 11.63 -52.33 -0.61 -10.34 16 22 C 0.57 19.21 7.43 85.04 0.63 19.85 16 23 O -0.52 -19.14 15.20 -4.83 -0.07 -19.21 16 24 N -0.55 -16.65 2.95 -806.92 -2.38 -19.03 16 25 C 0.08 1.79 10.09 127.77 1.29 3.08 16 26 C 0.69 22.09 8.11 179.26 1.45 23.55 16 27 O -0.55 -18.75 15.19 -4.00 -0.06 -18.81 16 28 N -0.54 -17.05 2.89 -676.71 -1.96 -19.01 16 29 C 0.03 0.99 9.59 127.77 1.22 2.22 16 30 H 0.02 0.96 8.14 -2.39 -0.02 0.95 16 31 H 0.06 2.28 2.71 -2.39 -0.01 2.27 16 32 H 0.03 1.32 8.14 -2.39 -0.02 1.31 16 33 H 0.07 3.31 5.91 -2.38 -0.01 3.29 16 34 H 0.04 1.96 8.14 -2.39 -0.02 1.94 16 35 H 0.26 12.74 8.31 -92.70 -0.77 11.96 16 36 H 0.38 11.80 7.73 -89.70 -0.69 11.11 16 37 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 38 H 0.10 2.13 7.40 -2.39 -0.02 2.12 16 39 H 0.10 2.08 7.35 -2.39 -0.02 2.06 16 40 H 0.10 2.40 8.14 -2.39 -0.02 2.38 16 41 H 0.09 2.79 7.20 -2.39 -0.02 2.77 16 42 H 0.13 4.41 3.07 -2.38 -0.01 4.40 16 Total: -1.00 -59.13 338.44 1.17 -57.96 By element: Atomic # 1 Polarization: 28.31 SS G_CDS: -2.61 Total: 25.70 kcal Atomic # 6 Polarization: 39.58 SS G_CDS: 7.60 Total: 47.18 kcal Atomic # 7 Polarization: -126.37 SS G_CDS: -5.71 Total: -132.09 kcal Atomic # 8 Polarization: -37.89 SS G_CDS: -0.13 Total: -38.02 kcal Atomic # 14 Polarization: 37.25 SS G_CDS: 2.03 Total: 39.27 kcal Total: -59.13 1.17 -57.96 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604013906.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 167.772 kcal (2) G-P(sol) polarization free energy of solvation -59.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.956 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds