Wall clock time and date at job start Tue Mar 31 2020 19:19:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52994 * 109.47547 * 2 1 4 4 H 1.09002 * 109.47024 * 304.03751 * 3 2 1 5 5 C 1.50704 * 109.47414 * 184.03915 * 3 2 1 6 6 O 1.21294 * 120.00040 * 255.54214 * 5 3 2 7 7 N 1.34778 * 119.99712 * 75.53432 * 5 3 2 8 8 C 1.37102 * 119.99593 * 184.61608 * 7 5 3 9 9 H 1.07993 * 120.00117 * 221.22525 * 8 7 5 10 10 C 1.38951 * 119.99853 * 41.23858 * 8 7 5 11 11 N 1.31414 * 119.99963 * 24.93505 * 10 8 7 12 12 Si 1.86795 * 120.00019 * 204.94316 * 10 8 7 13 13 H 1.48508 * 109.47187 * 359.97438 * 12 10 8 14 14 H 1.48504 * 109.47302 * 119.99522 * 12 10 8 15 15 H 1.48504 * 109.47369 * 239.99496 * 12 10 8 16 16 C 1.46496 * 120.00480 * 4.63045 * 7 5 3 17 17 C 1.52997 * 109.47373 * 87.51760 * 16 7 5 18 18 C 1.50710 * 109.47139 * 180.02562 * 17 16 7 19 19 O 1.20828 * 119.99586 * 0.02562 * 18 17 16 20 20 O 1.34221 * 119.99796 * 179.97438 * 18 17 16 21 21 C 1.50691 * 109.47295 * 64.03736 * 3 2 1 22 22 C 1.38266 * 119.94639 * 59.73168 * 21 3 2 23 23 C 1.38146 * 120.05874 * 179.72754 * 22 21 3 24 24 C 1.38728 * 119.94027 * 0.54695 * 23 22 21 25 25 O 1.35905 * 120.05683 * 179.75125 * 24 23 22 26 26 C 1.42898 * 116.99460 * 359.97137 * 25 24 23 27 27 C 1.38735 * 119.89131 * 359.72282 * 24 23 22 28 28 C 1.38142 * 119.94304 * 0.02562 * 27 24 23 29 29 H 1.09000 * 109.46997 * 304.74847 * 1 2 3 30 30 H 1.09007 * 109.47068 * 64.74444 * 1 2 3 31 31 H 1.09002 * 109.47433 * 184.73949 * 1 2 3 32 32 H 1.09005 * 109.47264 * 239.99159 * 2 1 3 33 33 H 1.09004 * 109.46806 * 119.99963 * 2 1 3 34 34 H 0.97000 * 119.99567 * 184.96754 * 11 10 8 35 35 H 1.08998 * 109.47143 * 207.51802 * 16 7 5 36 36 H 1.09004 * 109.46920 * 327.51701 * 16 7 5 37 37 H 1.08998 * 109.47021 * 300.00117 * 17 16 7 38 38 H 1.08995 * 109.47381 * 60.00239 * 17 16 7 39 39 H 0.96705 * 116.99689 * 179.97438 * 20 18 17 40 40 H 1.08001 * 119.97043 * 359.97438 * 22 21 3 41 41 H 1.08005 * 120.03022 * 180.26605 * 23 22 21 42 42 H 1.09001 * 109.46838 * 180.02562 * 26 25 24 43 43 H 1.08999 * 109.47423 * 300.00048 * 26 25 24 44 44 H 1.09001 * 109.47336 * 60.00594 * 26 25 24 45 45 H 1.08001 * 120.02602 * 179.97438 * 27 24 23 46 46 H 1.08002 * 119.97406 * 180.02562 * 28 27 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6188 1.9767 -0.8516 5 6 3.5437 1.4435 -0.1001 6 8 4.2166 1.6823 0.8804 7 7 4.1408 1.1791 -1.2791 8 6 5.5068 1.0866 -1.3501 9 1 6.0348 1.5222 -2.1855 10 6 6.2119 0.4322 -0.3475 11 7 5.6199 -0.4903 0.3773 12 14 8.0013 0.8640 -0.0296 13 1 8.4296 1.9263 -0.9749 14 1 8.1528 1.3514 1.3650 15 1 8.8443 -0.3426 -0.2266 16 6 3.3302 0.9908 -2.4848 17 6 3.0777 2.3469 -3.1466 18 6 2.2433 2.1532 -4.3865 19 8 1.8868 1.0442 -4.7076 20 8 1.8953 3.2126 -5.1335 21 6 1.6211 2.1234 1.2773 22 6 2.0334 1.6177 2.4964 23 6 1.6554 2.2434 3.6686 24 6 0.8521 3.3735 3.6223 25 8 0.4746 3.9879 4.7743 26 6 0.9412 3.4156 5.9977 27 6 0.4350 3.8757 2.3982 28 6 0.8201 3.2493 1.2286 29 1 -0.3633 0.5857 0.8444 30 1 -0.3633 0.4385 -0.9295 31 1 -0.3634 -1.0241 0.0849 32 1 1.8933 -0.5140 -0.8899 33 1 1.8932 -0.5139 0.8900 34 1 6.0888 -0.8959 1.1234 35 1 3.8597 0.3400 -3.1806 36 1 2.3775 0.5353 -2.2146 37 1 2.5482 2.9977 -2.4508 38 1 4.0303 2.8024 -3.4168 39 1 1.3599 3.0385 -5.9198 40 1 2.6549 0.7351 2.5320 41 1 1.9813 1.8505 4.6204 42 1 0.5682 4.0010 6.8381 43 1 0.5799 2.3906 6.0805 44 1 2.0312 3.4186 6.0078 45 1 -0.1908 4.7550 2.3596 46 1 0.4961 3.6401 0.2753 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001604865335.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:19:02 Heat of formation + Delta-G solvation = -135.606276 kcal Electronic energy + Delta-G solvation = -30122.492588 eV Core-core repulsion = 25977.865773 eV Total energy + Delta-G solvation = -4144.626815 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.19791 -39.94876 -38.86095 -37.13011 -36.04650 -34.55617 -34.20267 -32.18168 -30.70273 -30.09230 -29.83846 -27.66113 -26.47406 -24.88716 -23.68958 -22.67429 -21.70386 -21.09785 -20.31939 -19.00733 -17.97566 -17.87778 -16.87386 -16.45364 -15.98761 -15.84946 -15.59541 -15.25962 -15.03628 -14.70254 -14.29949 -13.97134 -13.80844 -13.54526 -13.38983 -13.03751 -12.97837 -12.87676 -12.64927 -12.31253 -12.10302 -11.87998 -11.64492 -11.49992 -11.41238 -11.25921 -11.11654 -10.89166 -10.79125 -10.70659 -10.62190 -10.56212 -10.39635 -10.23061 -10.12129 -10.04352 -8.77406 -8.62150 -8.08178 -7.69720 -7.24183 -6.18622 -3.88054 1.72742 1.83905 2.38173 3.18331 3.31094 3.42789 3.42818 3.43371 4.10358 4.11982 4.39781 4.90880 5.03889 5.15676 5.17772 5.17976 5.21988 5.28128 5.34889 5.39569 5.46362 5.54912 5.55871 5.60445 5.69923 5.76348 5.81801 5.87146 5.94616 6.09833 6.17193 6.24784 6.26930 6.37765 6.47037 6.51142 6.53941 6.65658 6.66469 6.74103 6.86297 7.10107 7.16801 7.59609 7.64293 8.03090 8.20558 9.00640 9.12514 9.60482 10.22163 10.90154 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.008500 B = 0.004805 C = 0.003500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3293.344399 B = 5825.310180 C = 7997.780897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.108 4.108 3 C -0.064 4.064 4 H 0.078 0.922 5 C 0.490 3.510 6 O -0.530 6.530 7 N -0.453 5.453 8 C -0.353 4.353 9 H 0.079 0.921 10 C 0.082 3.918 11 N -0.831 5.831 12 Si 0.902 3.098 13 H -0.271 1.271 14 H -0.281 1.281 15 H -0.288 1.288 16 C 0.113 3.887 17 C -0.133 4.133 18 C 0.482 3.518 19 O -0.517 6.517 20 O -0.522 6.522 21 C -0.082 4.082 22 C -0.032 4.032 23 C -0.211 4.211 24 C 0.113 3.887 25 O -0.324 6.324 26 C 0.029 3.971 27 C -0.159 4.159 28 C -0.082 4.082 29 H 0.054 0.946 30 H 0.050 0.950 31 H 0.051 0.949 32 H 0.073 0.927 33 H 0.069 0.931 34 H 0.263 0.737 35 H 0.079 0.921 36 H 0.070 0.930 37 H 0.101 0.899 38 H 0.110 0.890 39 H 0.404 0.596 40 H 0.130 0.870 41 H 0.121 0.879 42 H 0.094 0.906 43 H 0.053 0.947 44 H 0.054 0.946 45 H 0.123 0.877 46 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.524 5.315 0.456 12.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.146 4.146 3 C -0.086 4.086 4 H 0.097 0.903 5 C 0.277 3.723 6 O -0.407 6.407 7 N -0.175 5.175 8 C -0.479 4.479 9 H 0.096 0.904 10 C -0.129 4.129 11 N -0.464 5.464 12 Si 0.729 3.271 13 H -0.196 1.196 14 H -0.207 1.207 15 H -0.214 1.214 16 C -0.012 4.012 17 C -0.172 4.172 18 C 0.325 3.675 19 O -0.405 6.405 20 O -0.333 6.333 21 C -0.083 4.083 22 C -0.050 4.050 23 C -0.229 4.229 24 C 0.068 3.932 25 O -0.238 6.238 26 C -0.066 4.066 27 C -0.178 4.178 28 C -0.100 4.100 29 H 0.073 0.927 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.091 0.909 33 H 0.088 0.912 34 H 0.073 0.927 35 H 0.098 0.902 36 H 0.088 0.912 37 H 0.119 0.881 38 H 0.128 0.872 39 H 0.262 0.738 40 H 0.148 0.852 41 H 0.139 0.861 42 H 0.113 0.887 43 H 0.071 0.929 44 H 0.073 0.927 45 H 0.141 0.859 46 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -11.084 5.180 1.382 12.312 hybrid contribution 0.710 -0.117 -0.231 0.756 sum -10.374 5.062 1.151 11.600 Atomic orbital electron populations 1.21801 0.96077 1.01205 1.01514 1.21479 0.95018 0.94634 1.03442 1.20330 0.96191 0.96909 0.95185 0.90350 1.19691 0.87429 0.80563 0.84644 1.90521 1.65016 1.49437 1.35776 1.43234 1.05562 1.63941 1.04719 1.18958 0.80047 1.36870 1.12045 0.90357 1.25058 0.98755 0.92028 0.97047 1.69936 1.39266 1.19872 1.17344 0.86338 0.83946 0.78136 0.78702 1.19579 1.20691 1.21423 1.21394 0.97175 0.92474 0.90153 1.22038 1.00070 1.03473 0.91604 1.23769 0.77550 0.81704 0.84513 1.90709 1.52724 1.26187 1.70874 1.84591 1.67913 1.40422 1.40411 1.19361 0.98395 0.96105 0.94436 1.20867 0.94438 0.98977 0.90741 1.21183 1.03901 0.98323 0.99525 1.18967 0.95697 0.92544 0.85950 1.86005 1.71338 1.53488 1.12966 1.22978 0.99868 0.99156 0.84602 1.20201 1.05494 1.02475 0.89638 1.20782 0.97233 0.94772 0.97213 0.92659 0.93107 0.93028 0.90873 0.91229 0.92655 0.90207 0.91181 0.88134 0.87193 0.73824 0.85240 0.86083 0.88744 0.92874 0.92717 0.85882 0.85936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.07 9.79 37.15 0.36 -1.70 16 2 C -0.11 -1.87 4.94 -26.74 -0.13 -2.00 16 3 C -0.06 -1.18 1.54 -92.93 -0.14 -1.32 16 4 H 0.08 1.28 6.00 -51.93 -0.31 0.97 16 5 C 0.49 11.50 6.06 -10.98 -0.07 11.43 16 6 O -0.53 -14.54 12.68 5.55 0.07 -14.47 16 7 N -0.45 -10.56 2.52 -114.81 -0.29 -10.85 16 8 C -0.35 -9.26 9.16 -14.93 -0.14 -9.40 16 9 H 0.08 1.98 7.95 -52.49 -0.42 1.56 16 10 C 0.08 2.23 4.16 -17.47 -0.07 2.15 16 11 N -0.83 -23.52 12.13 55.50 0.67 -22.84 16 12 Si 0.90 21.56 29.62 -169.99 -5.04 16.52 16 13 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 14 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 15 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 16 C 0.11 2.13 4.19 -4.05 -0.02 2.12 16 17 C -0.13 -2.03 6.00 -27.88 -0.17 -2.19 16 18 C 0.48 6.79 8.33 36.01 0.30 7.09 16 19 O -0.52 -8.63 16.74 -18.75 -0.31 -8.94 16 20 O -0.52 -5.72 13.42 -39.23 -0.53 -6.25 16 21 C -0.08 -1.47 3.41 -104.60 -0.36 -1.83 16 22 C -0.03 -0.60 7.79 -39.60 -0.31 -0.91 16 23 C -0.21 -3.48 9.04 -39.43 -0.36 -3.84 16 24 C 0.11 1.79 6.69 -39.22 -0.26 1.53 16 25 O -0.32 -4.65 10.50 -19.44 -0.20 -4.85 16 26 C 0.03 0.31 9.81 101.05 0.99 1.30 16 27 C -0.16 -2.42 9.99 -39.43 -0.39 -2.82 16 28 C -0.08 -1.28 9.66 -39.61 -0.38 -1.66 16 29 H 0.05 0.77 7.20 -51.93 -0.37 0.39 16 30 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 31 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 32 H 0.07 1.33 6.23 -51.93 -0.32 1.01 16 33 H 0.07 1.31 7.23 -51.93 -0.38 0.94 16 34 H 0.26 7.22 8.32 -40.82 -0.34 6.88 16 35 H 0.08 1.58 7.98 -51.93 -0.41 1.17 16 36 H 0.07 1.26 4.70 -51.93 -0.24 1.01 16 37 H 0.10 1.43 7.19 -51.93 -0.37 1.06 16 38 H 0.11 1.68 8.14 -51.93 -0.42 1.25 16 39 H 0.40 2.59 9.10 45.56 0.41 3.00 16 40 H 0.13 2.68 7.10 -52.49 -0.37 2.31 16 41 H 0.12 1.75 6.30 -52.48 -0.33 1.42 16 42 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.05 0.51 7.66 -51.93 -0.40 0.11 16 44 H 0.05 0.57 7.66 -51.93 -0.40 0.17 16 45 H 0.12 1.60 8.06 -52.49 -0.42 1.18 16 46 H 0.12 1.60 7.94 -52.49 -0.42 1.18 16 LS Contribution 378.68 15.07 5.71 5.71 Total: -1.00 -33.80 378.68 -6.64 -40.45 By element: Atomic # 1 Polarization: 13.18 SS G_CDS: -5.58 Total: 7.60 kcal Atomic # 6 Polarization: -0.92 SS G_CDS: -1.14 Total: -2.06 kcal Atomic # 7 Polarization: -34.08 SS G_CDS: 0.38 Total: -33.70 kcal Atomic # 8 Polarization: -33.54 SS G_CDS: -0.97 Total: -34.52 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.04 Total: 16.52 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -33.80 -6.64 -40.45 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604865335.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.161 kcal (2) G-P(sol) polarization free energy of solvation -33.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds