Wall clock time and date at job start Tue Mar 31 2020 19:19:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52994 * 109.47547 * 2 1 4 4 H 1.09002 * 109.47024 * 304.03751 * 3 2 1 5 5 C 1.50704 * 109.47414 * 184.03915 * 3 2 1 6 6 O 1.21294 * 120.00040 * 255.54214 * 5 3 2 7 7 N 1.34778 * 119.99712 * 75.53432 * 5 3 2 8 8 C 1.37102 * 119.99593 * 184.61608 * 7 5 3 9 9 H 1.07993 * 120.00117 * 221.22525 * 8 7 5 10 10 C 1.38951 * 119.99853 * 41.23858 * 8 7 5 11 11 N 1.31414 * 119.99963 * 24.93505 * 10 8 7 12 12 Si 1.86795 * 120.00019 * 204.94316 * 10 8 7 13 13 H 1.48508 * 109.47187 * 359.97438 * 12 10 8 14 14 H 1.48504 * 109.47302 * 119.99522 * 12 10 8 15 15 H 1.48504 * 109.47369 * 239.99496 * 12 10 8 16 16 C 1.46496 * 120.00480 * 4.63045 * 7 5 3 17 17 C 1.52997 * 109.47373 * 87.51760 * 16 7 5 18 18 C 1.50710 * 109.47139 * 180.02562 * 17 16 7 19 19 O 1.20828 * 119.99586 * 0.02562 * 18 17 16 20 20 O 1.34221 * 119.99796 * 179.97438 * 18 17 16 21 21 C 1.50691 * 109.47295 * 64.03736 * 3 2 1 22 22 C 1.38266 * 119.94639 * 59.73168 * 21 3 2 23 23 C 1.38146 * 120.05874 * 179.72754 * 22 21 3 24 24 C 1.38728 * 119.94027 * 0.54695 * 23 22 21 25 25 O 1.35905 * 120.05683 * 179.75125 * 24 23 22 26 26 C 1.42898 * 116.99460 * 359.97137 * 25 24 23 27 27 C 1.38735 * 119.89131 * 359.72282 * 24 23 22 28 28 C 1.38142 * 119.94304 * 0.02562 * 27 24 23 29 29 H 1.09000 * 109.46997 * 304.74847 * 1 2 3 30 30 H 1.09007 * 109.47068 * 64.74444 * 1 2 3 31 31 H 1.09002 * 109.47433 * 184.73949 * 1 2 3 32 32 H 1.09005 * 109.47264 * 239.99159 * 2 1 3 33 33 H 1.09004 * 109.46806 * 119.99963 * 2 1 3 34 34 H 0.97000 * 119.99567 * 184.96754 * 11 10 8 35 35 H 1.08998 * 109.47143 * 207.51802 * 16 7 5 36 36 H 1.09004 * 109.46920 * 327.51701 * 16 7 5 37 37 H 1.08998 * 109.47021 * 300.00117 * 17 16 7 38 38 H 1.08995 * 109.47381 * 60.00239 * 17 16 7 39 39 H 0.96705 * 116.99689 * 179.97438 * 20 18 17 40 40 H 1.08001 * 119.97043 * 359.97438 * 22 21 3 41 41 H 1.08005 * 120.03022 * 180.26605 * 23 22 21 42 42 H 1.09001 * 109.46838 * 180.02562 * 26 25 24 43 43 H 1.08999 * 109.47423 * 300.00048 * 26 25 24 44 44 H 1.09001 * 109.47336 * 60.00594 * 26 25 24 45 45 H 1.08001 * 120.02602 * 179.97438 * 27 24 23 46 46 H 1.08002 * 119.97406 * 180.02562 * 28 27 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6188 1.9767 -0.8516 5 6 3.5437 1.4435 -0.1001 6 8 4.2166 1.6823 0.8804 7 7 4.1408 1.1791 -1.2791 8 6 5.5068 1.0866 -1.3501 9 1 6.0348 1.5222 -2.1855 10 6 6.2119 0.4322 -0.3475 11 7 5.6199 -0.4903 0.3773 12 14 8.0013 0.8640 -0.0296 13 1 8.4296 1.9263 -0.9749 14 1 8.1528 1.3514 1.3650 15 1 8.8443 -0.3426 -0.2266 16 6 3.3302 0.9908 -2.4848 17 6 3.0777 2.3469 -3.1466 18 6 2.2433 2.1532 -4.3865 19 8 1.8868 1.0442 -4.7076 20 8 1.8953 3.2126 -5.1335 21 6 1.6211 2.1234 1.2773 22 6 2.0334 1.6177 2.4964 23 6 1.6554 2.2434 3.6686 24 6 0.8521 3.3735 3.6223 25 8 0.4746 3.9879 4.7743 26 6 0.9412 3.4156 5.9977 27 6 0.4350 3.8757 2.3982 28 6 0.8201 3.2493 1.2286 29 1 -0.3633 0.5857 0.8444 30 1 -0.3633 0.4385 -0.9295 31 1 -0.3634 -1.0241 0.0849 32 1 1.8933 -0.5140 -0.8899 33 1 1.8932 -0.5139 0.8900 34 1 6.0888 -0.8959 1.1234 35 1 3.8597 0.3400 -3.1806 36 1 2.3775 0.5353 -2.2146 37 1 2.5482 2.9977 -2.4508 38 1 4.0303 2.8024 -3.4168 39 1 1.3599 3.0385 -5.9198 40 1 2.6549 0.7351 2.5320 41 1 1.9813 1.8505 4.6204 42 1 0.5682 4.0010 6.8381 43 1 0.5799 2.3906 6.0805 44 1 2.0312 3.4186 6.0078 45 1 -0.1908 4.7550 2.3596 46 1 0.4961 3.6401 0.2753 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001604865335.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:19:01 Heat of formation + Delta-G solvation = -157.139984 kcal Electronic energy + Delta-G solvation = -30123.426359 eV Core-core repulsion = 25977.865773 eV Total energy + Delta-G solvation = -4145.560586 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.49449 -41.10193 -40.32039 -38.46456 -37.11849 -36.28286 -35.63019 -34.03137 -31.95143 -31.65899 -31.07664 -28.84439 -27.79790 -26.50076 -25.24971 -23.95428 -22.92327 -22.47257 -21.66240 -20.63692 -19.10990 -19.03487 -18.52124 -17.76860 -17.41626 -17.00235 -16.76638 -16.62056 -16.48787 -16.40483 -15.67425 -15.45491 -15.34426 -14.98508 -14.51748 -14.45380 -14.35178 -14.14323 -14.00054 -13.49602 -13.45560 -13.39806 -13.00118 -12.84970 -12.80096 -12.74065 -12.54126 -12.47378 -12.35508 -12.16975 -12.03927 -12.01538 -11.79800 -11.57479 -11.48992 -11.47225 -10.75908 -10.04704 -9.76957 -9.18965 -8.95109 -8.22967 -5.93842 0.47658 0.54744 1.27721 1.37353 1.45165 1.52085 2.09835 2.27259 2.41299 2.52980 2.82874 3.25475 3.33019 3.80291 3.88256 3.97368 4.00046 4.06051 4.13998 4.23482 4.33649 4.36672 4.37508 4.43803 4.56855 4.57664 4.62924 4.68129 4.71770 4.78368 4.82606 4.88720 4.98319 5.10009 5.17912 5.19323 5.24955 5.38287 5.44166 5.51582 5.53161 5.68402 5.84696 5.87202 6.19981 6.48584 7.04945 7.08791 7.23217 7.69508 8.36748 8.84968 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.008500 B = 0.004805 C = 0.003500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3293.344399 B = 5825.310180 C = 7997.780897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.103 4.103 3 C -0.051 4.051 4 H 0.106 0.894 5 C 0.481 3.519 6 O -0.578 6.578 7 N -0.466 5.466 8 C -0.362 4.362 9 H 0.083 0.917 10 C 0.034 3.966 11 N -0.865 5.865 12 Si 0.955 3.045 13 H -0.257 1.257 14 H -0.298 1.298 15 H -0.279 1.279 16 C 0.115 3.885 17 C -0.126 4.126 18 C 0.498 3.502 19 O -0.546 6.546 20 O -0.510 6.510 21 C -0.100 4.100 22 C -0.053 4.053 23 C -0.219 4.219 24 C 0.112 3.888 25 O -0.330 6.330 26 C 0.020 3.980 27 C -0.158 4.158 28 C -0.075 4.075 29 H 0.057 0.943 30 H 0.070 0.930 31 H 0.062 0.938 32 H 0.059 0.941 33 H 0.040 0.960 34 H 0.257 0.743 35 H 0.064 0.936 36 H 0.079 0.921 37 H 0.117 0.883 38 H 0.111 0.889 39 H 0.428 0.572 40 H 0.093 0.907 41 H 0.132 0.868 42 H 0.125 0.875 43 H 0.060 0.940 44 H 0.051 0.949 45 H 0.151 0.849 46 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.683 7.579 -0.548 15.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.141 4.141 3 C -0.073 4.073 4 H 0.124 0.876 5 C 0.270 3.730 6 O -0.459 6.459 7 N -0.188 5.188 8 C -0.489 4.489 9 H 0.101 0.899 10 C -0.173 4.173 11 N -0.501 5.501 12 Si 0.780 3.220 13 H -0.180 1.180 14 H -0.225 1.225 15 H -0.205 1.205 16 C -0.009 4.009 17 C -0.165 4.165 18 C 0.341 3.659 19 O -0.437 6.437 20 O -0.323 6.323 21 C -0.101 4.101 22 C -0.072 4.072 23 C -0.238 4.238 24 C 0.067 3.933 25 O -0.244 6.244 26 C -0.074 4.074 27 C -0.177 4.177 28 C -0.093 4.093 29 H 0.076 0.924 30 H 0.089 0.911 31 H 0.081 0.919 32 H 0.078 0.922 33 H 0.058 0.942 34 H 0.066 0.934 35 H 0.082 0.918 36 H 0.097 0.903 37 H 0.135 0.865 38 H 0.129 0.871 39 H 0.290 0.710 40 H 0.111 0.889 41 H 0.150 0.850 42 H 0.143 0.857 43 H 0.079 0.921 44 H 0.070 0.930 45 H 0.169 0.831 46 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -13.259 7.462 0.316 15.218 hybrid contribution 1.333 -0.754 0.089 1.534 sum -11.926 6.708 0.405 13.689 Atomic orbital electron populations 1.21708 0.92823 1.02278 1.02611 1.21403 0.97697 0.93638 1.01319 1.20228 0.92325 0.97933 0.96789 0.87613 1.20557 0.89595 0.79057 0.83760 1.90484 1.66750 1.51330 1.37315 1.43434 1.05230 1.63874 1.06273 1.19274 0.81916 1.35866 1.11855 0.89887 1.25803 1.02001 0.92159 0.97310 1.70030 1.40601 1.21392 1.18056 0.85510 0.80429 0.78414 0.77597 1.18047 1.22537 1.20521 1.21389 0.96501 0.94692 0.88295 1.21775 1.00932 1.01089 0.92688 1.23232 0.76847 0.81623 0.84148 1.90719 1.53956 1.27407 1.71591 1.84511 1.67953 1.38676 1.41197 1.19390 0.99815 0.97419 0.93491 1.20682 0.95355 0.98705 0.92438 1.21274 1.04327 0.98868 0.99294 1.19135 0.95020 0.91991 0.87133 1.86003 1.71308 1.53661 1.13451 1.23278 0.99949 1.00290 0.83926 1.20582 1.05047 1.02930 0.89102 1.21082 0.95920 0.93350 0.98934 0.92420 0.91106 0.91926 0.92218 0.94163 0.93369 0.91777 0.90279 0.86491 0.87076 0.71041 0.88922 0.85043 0.85656 0.92091 0.93015 0.83111 0.82695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.58 9.79 71.98 0.70 -2.88 16 2 C -0.10 -3.60 4.94 30.59 0.15 -3.45 16 3 C -0.05 -1.87 1.54 -12.29 -0.02 -1.89 16 4 H 0.11 3.20 6.00 -2.39 -0.01 3.19 16 5 C 0.48 23.17 6.06 87.66 0.53 23.70 16 6 O -0.58 -33.15 12.68 -3.07 -0.04 -33.19 16 7 N -0.47 -22.15 2.52 -635.54 -1.60 -23.75 16 8 C -0.36 -19.40 9.16 84.04 0.77 -18.63 16 9 H 0.08 4.24 7.95 -2.91 -0.02 4.22 16 10 C 0.03 1.90 4.16 84.93 0.35 2.26 16 11 N -0.87 -51.45 12.13 21.66 0.26 -51.18 16 12 Si 0.95 45.51 29.62 68.60 2.03 47.55 16 13 H -0.26 -11.48 7.11 99.48 0.71 -10.77 16 14 H -0.30 -14.95 7.11 99.48 0.71 -14.24 16 15 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 16 C 0.12 4.32 4.19 86.38 0.36 4.68 16 17 C -0.13 -3.60 6.00 29.85 0.18 -3.42 16 18 C 0.50 12.68 8.33 71.24 0.59 13.27 16 19 O -0.55 -17.15 16.74 21.96 0.37 -16.78 16 20 O -0.51 -9.27 13.42 -51.33 -0.69 -9.96 16 21 C -0.10 -3.56 3.41 -19.85 -0.07 -3.63 16 22 C -0.05 -2.08 7.79 22.25 0.17 -1.90 16 23 C -0.22 -7.32 9.04 22.37 0.20 -7.12 16 24 C 0.11 3.39 6.69 22.51 0.15 3.54 16 25 O -0.33 -8.78 10.50 -92.48 -0.97 -9.75 16 26 C 0.02 0.38 9.81 113.37 1.11 1.49 16 27 C -0.16 -4.36 9.99 22.37 0.22 -4.14 16 28 C -0.08 -2.14 9.66 22.25 0.22 -1.92 16 29 H 0.06 1.49 7.20 -2.39 -0.02 1.48 16 30 H 0.07 1.58 8.14 -2.38 -0.02 1.56 16 31 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 32 H 0.06 2.22 6.23 -2.38 -0.01 2.20 16 33 H 0.04 1.62 7.23 -2.38 -0.02 1.60 16 34 H 0.26 14.93 8.32 -92.71 -0.77 14.15 16 35 H 0.06 2.57 7.98 -2.39 -0.02 2.55 16 36 H 0.08 2.80 4.70 -2.39 -0.01 2.79 16 37 H 0.12 2.98 7.19 -2.39 -0.02 2.96 16 38 H 0.11 3.19 8.14 -2.39 -0.02 3.17 16 39 H 0.43 3.77 9.10 -74.05 -0.67 3.09 16 40 H 0.09 4.22 7.10 -2.91 -0.02 4.20 16 41 H 0.13 3.91 6.30 -2.91 -0.02 3.89 16 42 H 0.13 1.60 8.14 -2.39 -0.02 1.58 16 43 H 0.06 1.07 7.66 -2.39 -0.02 1.06 16 44 H 0.05 1.02 7.66 -2.39 -0.02 1.01 16 45 H 0.15 3.30 8.06 -2.91 -0.02 3.28 16 46 H 0.16 3.34 7.94 -2.91 -0.02 3.31 16 Total: -1.00 -76.74 378.68 5.34 -71.41 By element: Atomic # 1 Polarization: 25.34 SS G_CDS: 0.34 Total: 25.68 kcal Atomic # 6 Polarization: -5.66 SS G_CDS: 5.63 Total: -0.03 kcal Atomic # 7 Polarization: -73.59 SS G_CDS: -1.34 Total: -74.93 kcal Atomic # 8 Polarization: -68.34 SS G_CDS: -1.33 Total: -69.68 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 2.03 Total: 47.55 kcal Total: -76.74 5.34 -71.41 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604865335.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.733 kcal (2) G-P(sol) polarization free energy of solvation -76.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds