Wall clock time and date at job start Tue Mar 31 2020 19:19:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.52996 * 109.47264 * 2 1 4 4 H 1.08996 * 109.47613 * 242.41055 * 3 2 1 5 5 C 1.50701 * 109.46997 * 2.40943 * 3 2 1 6 6 O 1.21291 * 119.99761 * 22.00105 * 5 3 2 7 7 N 1.34780 * 119.99958 * 201.99589 * 5 3 2 8 8 C 1.37104 * 119.99586 * 170.32967 * 7 5 3 9 9 H 1.08004 * 119.99212 * 109.25886 * 8 7 5 10 10 C 1.38947 * 120.00331 * 289.26175 * 8 7 5 11 11 N 1.31417 * 119.99884 * 341.86655 * 10 8 7 12 12 Si 1.86798 * 120.00297 * 161.87550 * 10 8 7 13 13 H 1.48507 * 109.46784 * 359.97438 * 12 10 8 14 14 H 1.48499 * 109.47459 * 119.99370 * 12 10 8 15 15 H 1.48493 * 109.46870 * 240.00043 * 12 10 8 16 16 C 1.46494 * 120.00242 * 350.34003 * 7 5 3 17 17 C 1.52996 * 109.47425 * 128.72508 * 16 7 5 18 18 C 1.50704 * 109.47191 * 184.43268 * 17 16 7 19 19 O 1.20823 * 119.99500 * 359.97438 * 18 17 16 20 20 O 1.34230 * 119.99872 * 179.97438 * 18 17 16 21 21 C 1.50706 * 109.47402 * 122.40997 * 3 2 1 22 22 C 1.38258 * 119.94490 * 120.00227 * 21 3 2 23 23 C 1.38146 * 120.05443 * 180.02562 * 22 21 3 24 24 C 1.38727 * 119.94574 * 359.97438 * 23 22 21 25 25 O 1.35899 * 120.05973 * 179.97438 * 24 23 22 26 26 C 1.42894 * 117.00355 * 180.02562 * 25 24 23 27 27 C 1.38737 * 119.88785 * 359.97438 * 24 23 22 28 28 C 1.38140 * 119.94074 * 359.97438 * 27 24 23 29 29 H 1.08996 * 109.47565 * 46.33114 * 1 2 3 30 30 H 1.09002 * 109.47294 * 166.32872 * 1 2 3 31 31 H 1.09002 * 109.47436 * 286.32382 * 1 2 3 32 32 H 1.09000 * 109.47344 * 239.99850 * 2 1 3 33 33 H 1.09002 * 109.47232 * 120.00190 * 2 1 3 34 34 H 0.96997 * 120.00190 * 184.91933 * 11 10 8 35 35 H 1.09004 * 109.46851 * 248.72284 * 16 7 5 36 36 H 1.09001 * 109.47471 * 8.71807 * 16 7 5 37 37 H 1.09000 * 109.46573 * 304.42811 * 17 16 7 38 38 H 1.08997 * 109.47449 * 64.43054 * 17 16 7 39 39 H 0.96702 * 116.99649 * 179.97438 * 20 18 17 40 40 H 1.08006 * 119.97229 * 0.27578 * 22 21 3 41 41 H 1.08002 * 120.02780 * 180.02562 * 23 22 21 42 42 H 1.09002 * 109.47564 * 179.97438 * 26 25 24 43 43 H 1.09003 * 109.47216 * 299.99658 * 26 25 24 44 44 H 1.09001 * 109.47202 * 59.99842 * 26 25 24 45 45 H 1.08002 * 120.02498 * 179.97438 * 27 24 23 46 46 H 1.08005 * 119.96867 * 179.97438 * 28 27 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 1 2.6098 1.6264 -0.9107 5 6 0.8690 2.3892 0.0597 6 8 -0.1985 2.0071 0.4906 7 7 1.0080 3.6606 -0.3655 8 6 -0.0954 4.4634 -0.4987 9 1 -0.2550 5.2804 0.1894 10 6 -1.0084 4.2258 -1.5188 11 7 -0.6627 3.4910 -2.5521 12 14 -2.7271 4.9510 -1.4218 13 1 -2.8642 5.7330 -0.1668 14 1 -2.9552 5.8418 -2.5879 15 1 -3.7284 3.8545 -1.4331 16 6 2.3380 4.1847 -0.6856 17 6 2.3144 4.8207 -2.0769 18 6 3.7059 5.2623 -2.4511 19 8 4.6222 5.0867 -1.6835 20 8 3.9271 5.8506 -3.6371 21 6 2.9254 1.6623 1.1995 22 6 4.2440 2.0391 1.0242 23 6 5.0578 2.2407 2.1221 24 6 4.5508 2.0652 3.4014 25 8 5.3495 2.2624 4.4832 26 6 4.7603 2.0631 5.7696 27 6 3.2270 1.6881 3.5747 28 6 2.4171 1.4888 2.4736 29 1 -0.3634 0.7095 -0.7433 30 1 -0.3634 -0.9986 -0.2429 31 1 -0.3634 0.2888 0.9862 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 -1.2742 3.3837 -3.2973 35 1 2.6199 4.9357 0.0525 36 1 3.0627 3.3706 -0.6705 37 1 1.9569 4.0913 -2.8037 38 1 1.6487 5.6838 -2.0706 39 1 4.8360 6.1168 -3.8324 40 1 4.6371 2.1799 0.0281 41 1 6.0877 2.5355 1.9846 42 1 5.5044 2.2523 6.5434 43 1 3.9222 2.7485 5.8956 44 1 4.4050 1.0358 5.8513 45 1 2.8301 1.5505 4.5697 46 1 1.3865 1.1948 2.6080 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001604865340.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:19:06 Heat of formation + Delta-G solvation = -106.756431 kcal Electronic energy + Delta-G solvation = -30477.311789 eV Core-core repulsion = 26333.935997 eV Total energy + Delta-G solvation = -4143.375791 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.28072 -39.80439 -39.12689 -37.15057 -35.92964 -35.25157 -33.37785 -32.03655 -30.82745 -30.41388 -29.72921 -27.62015 -26.27872 -24.98010 -23.60813 -22.49002 -21.68168 -21.22301 -20.34970 -18.74855 -18.02033 -17.72707 -16.88472 -16.36422 -16.15453 -15.67375 -15.61683 -15.42057 -15.03289 -14.89867 -14.41010 -14.04610 -13.65148 -13.50180 -13.39838 -13.06729 -12.86029 -12.80007 -12.55749 -12.13438 -11.94446 -11.91344 -11.62950 -11.40240 -11.25089 -11.16541 -11.10606 -10.98645 -10.83699 -10.70679 -10.64228 -10.43217 -10.29514 -10.12083 -9.93433 -9.53809 -8.72882 -8.70915 -8.06705 -7.44383 -6.99932 -6.28003 -4.23721 1.60301 1.67112 2.63784 3.21222 3.33265 3.34975 3.35471 3.47329 3.94499 4.04164 4.24709 4.84328 4.94829 5.05079 5.07234 5.10518 5.19495 5.25732 5.39529 5.52128 5.54404 5.63095 5.69463 5.71540 5.82589 5.91005 5.94939 6.07832 6.22614 6.29378 6.35785 6.39382 6.47275 6.52777 6.61393 6.65889 6.72649 6.75013 6.95889 6.96950 6.99328 7.09356 7.50126 7.53658 7.56983 8.27380 8.34506 8.95556 9.03726 9.40547 10.10675 10.75454 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.009667 B = 0.004781 C = 0.003783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2895.735956 B = 5855.123554 C = 7399.396119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.101 4.101 3 C -0.073 4.073 4 H 0.088 0.912 5 C 0.509 3.491 6 O -0.536 6.536 7 N -0.453 5.453 8 C -0.338 4.338 9 H 0.071 0.929 10 C 0.076 3.924 11 N -0.859 5.859 12 Si 0.910 3.090 13 H -0.269 1.269 14 H -0.285 1.285 15 H -0.280 1.280 16 C 0.118 3.882 17 C -0.113 4.113 18 C 0.478 3.522 19 O -0.529 6.529 20 O -0.520 6.520 21 C -0.094 4.094 22 C -0.073 4.073 23 C -0.148 4.148 24 C 0.114 3.886 25 O -0.322 6.322 26 C 0.029 3.971 27 C -0.206 4.206 28 C -0.065 4.065 29 H 0.079 0.921 30 H 0.004 0.996 31 H 0.076 0.924 32 H 0.055 0.945 33 H 0.058 0.942 34 H 0.267 0.733 35 H 0.050 0.950 36 H 0.068 0.932 37 H 0.119 0.881 38 H 0.113 0.887 39 H 0.399 0.601 40 H 0.130 0.870 41 H 0.127 0.873 42 H 0.095 0.905 43 H 0.054 0.946 44 H 0.053 0.947 45 H 0.124 0.876 46 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.077 -2.166 5.281 11.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.139 4.139 3 C -0.095 4.095 4 H 0.106 0.894 5 C 0.298 3.702 6 O -0.416 6.416 7 N -0.175 5.175 8 C -0.465 4.465 9 H 0.088 0.912 10 C -0.133 4.133 11 N -0.492 5.492 12 Si 0.737 3.263 13 H -0.193 1.193 14 H -0.211 1.211 15 H -0.205 1.205 16 C -0.005 4.005 17 C -0.151 4.151 18 C 0.322 3.678 19 O -0.418 6.418 20 O -0.331 6.331 21 C -0.095 4.095 22 C -0.091 4.091 23 C -0.167 4.167 24 C 0.070 3.930 25 O -0.236 6.236 26 C -0.066 4.066 27 C -0.225 4.225 28 C -0.083 4.083 29 H 0.098 0.902 30 H 0.023 0.977 31 H 0.095 0.905 32 H 0.074 0.926 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.068 0.932 36 H 0.086 0.914 37 H 0.137 0.863 38 H 0.131 0.869 39 H 0.256 0.744 40 H 0.147 0.853 41 H 0.145 0.855 42 H 0.114 0.886 43 H 0.073 0.927 44 H 0.072 0.928 45 H 0.142 0.858 46 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 9.461 -2.584 5.663 11.325 hybrid contribution -0.337 0.600 -0.274 0.740 sum 9.124 -1.984 5.389 10.781 Atomic orbital electron populations 1.22348 0.93626 0.97233 1.05601 1.21466 0.98205 0.93307 1.00910 1.20423 0.96098 0.96696 0.96255 0.89402 1.20117 0.87948 0.83121 0.79036 1.90628 1.29959 1.73412 1.47626 1.43210 1.04499 1.09886 1.59910 1.18862 0.99730 1.13786 1.14133 0.91151 1.25584 0.99067 0.94464 0.94178 1.69812 1.36308 1.37538 1.05580 0.86184 0.83459 0.78600 0.78082 1.19332 1.21084 1.20540 1.21444 0.88240 0.98145 0.92710 1.21677 0.88079 1.04661 1.00675 1.24265 0.93019 0.72758 0.77745 1.90660 1.46485 1.53466 1.51215 1.84642 1.37266 1.72516 1.38691 1.19586 0.93884 1.01785 0.94226 1.20911 0.92782 0.97049 0.98372 1.20308 1.00852 1.06219 0.89329 1.18993 0.89641 0.97235 0.87179 1.86029 1.38841 1.85208 1.13472 1.22994 0.99808 1.01028 0.82820 1.21153 0.93441 1.08181 0.99711 1.20892 0.99643 0.96504 0.91264 0.90242 0.97708 0.90511 0.92636 0.92343 0.92271 0.93151 0.91414 0.86293 0.86909 0.74382 0.85251 0.85491 0.88635 0.92710 0.92849 0.85846 0.85260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.64 8.14 37.15 0.30 -2.34 16 2 C -0.10 -1.78 6.12 -26.74 -0.16 -1.94 16 3 C -0.07 -1.37 2.10 -92.92 -0.20 -1.57 16 4 H 0.09 1.61 6.58 -51.93 -0.34 1.26 16 5 C 0.51 11.71 5.55 -10.98 -0.06 11.65 16 6 O -0.54 -13.68 11.14 5.55 0.06 -13.61 16 7 N -0.45 -10.60 2.49 -114.81 -0.29 -10.89 16 8 C -0.34 -8.64 7.43 -14.93 -0.11 -8.75 16 9 H 0.07 1.84 7.90 -52.48 -0.41 1.43 16 10 C 0.08 1.93 5.24 -17.47 -0.09 1.84 16 11 N -0.86 -22.18 13.43 55.50 0.75 -21.44 16 12 Si 0.91 20.62 29.59 -169.99 -5.03 15.58 16 13 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 14 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 15 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 16 C 0.12 2.39 4.90 -4.05 -0.02 2.37 16 17 C -0.11 -2.13 5.55 -27.88 -0.15 -2.28 16 18 C 0.48 7.97 8.33 36.01 0.30 8.27 16 19 O -0.53 -9.65 16.69 -18.75 -0.31 -9.96 16 20 O -0.52 -7.13 13.42 -39.26 -0.53 -7.66 16 21 C -0.09 -1.61 4.14 -104.60 -0.43 -2.05 16 22 C -0.07 -1.15 8.60 -39.61 -0.34 -1.49 16 23 C -0.15 -2.23 9.99 -39.43 -0.39 -2.63 16 24 C 0.11 1.71 6.69 -39.22 -0.26 1.45 16 25 O -0.32 -4.37 10.50 -19.42 -0.20 -4.57 16 26 C 0.03 0.27 9.81 101.05 0.99 1.26 16 27 C -0.21 -3.07 9.04 -39.43 -0.36 -3.42 16 28 C -0.06 -1.09 8.51 -39.61 -0.34 -1.43 16 29 H 0.08 1.91 6.01 -51.97 -0.31 1.60 16 30 H 0.00 0.08 8.14 -51.93 -0.42 -0.34 16 31 H 0.08 1.62 6.44 -51.98 -0.33 1.29 16 32 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.06 0.94 7.14 -51.93 -0.37 0.57 16 34 H 0.27 6.65 8.32 -40.82 -0.34 6.31 16 35 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.07 1.28 3.46 -51.93 -0.18 1.10 16 37 H 0.12 2.44 7.93 -51.93 -0.41 2.03 16 38 H 0.11 2.23 7.66 -51.93 -0.40 1.83 16 39 H 0.40 3.46 9.10 45.56 0.41 3.88 16 40 H 0.13 1.90 7.37 -52.48 -0.39 1.51 16 41 H 0.13 1.70 8.06 -52.49 -0.42 1.28 16 42 H 0.10 0.67 8.14 -51.93 -0.42 0.24 16 43 H 0.05 0.50 7.66 -51.93 -0.40 0.10 16 44 H 0.05 0.45 7.66 -51.93 -0.40 0.05 16 45 H 0.12 1.54 6.30 -52.49 -0.33 1.21 16 46 H 0.13 2.26 8.05 -52.48 -0.42 1.84 16 LS Contribution 376.92 15.07 5.68 5.68 Total: -1.00 -30.60 376.92 -6.73 -37.33 By element: Atomic # 1 Polarization: 16.11 SS G_CDS: -5.53 Total: 10.58 kcal Atomic # 6 Polarization: 0.28 SS G_CDS: -1.33 Total: -1.04 kcal Atomic # 7 Polarization: -32.79 SS G_CDS: 0.46 Total: -32.33 kcal Atomic # 8 Polarization: -34.83 SS G_CDS: -0.98 Total: -35.81 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.03 Total: 15.58 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -30.60 -6.73 -37.33 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604865340.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.423 kcal (2) G-P(sol) polarization free energy of solvation -30.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds