Wall clock time and date at job start Tue Mar 31 2020 18:46:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34775 * 119.99805 * 2 1 4 4 O 1.21287 * 119.99798 * 180.02562 * 3 2 1 5 5 C 1.50705 * 120.00246 * 359.97438 * 3 2 1 6 6 C 1.50695 * 109.46992 * 180.02562 * 5 3 2 7 7 C 1.38299 * 119.93247 * 90.00201 * 6 5 3 8 8 C 1.38101 * 120.07425 * 179.97438 * 7 6 5 9 9 C 1.38886 * 119.92536 * 0.02562 * 8 7 6 10 10 O 1.35750 * 120.06440 * 180.02562 * 9 8 7 11 11 C 1.34828 * 117.00075 * 5.53777 * 10 9 8 12 12 H 1.07993 * 120.00518 * 354.94289 * 11 10 9 13 13 C 1.38663 * 119.99751 * 174.94575 * 11 10 9 14 14 N 1.31556 * 120.00220 * 359.97438 * 13 11 10 15 15 Si 1.86795 * 119.99821 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.47517 * 59.99414 * 15 13 11 17 17 H 1.48505 * 109.47332 * 179.97438 * 15 13 11 18 18 H 1.48502 * 109.46989 * 299.99567 * 15 13 11 19 19 C 1.38874 * 119.86623 * 0.27854 * 9 8 7 20 20 C 1.38106 * 119.92542 * 359.44577 * 19 9 8 21 21 C 1.46495 * 120.00023 * 180.02562 * 2 1 3 22 22 C 1.52995 * 109.47334 * 120.00085 * 21 2 1 23 23 C 1.53002 * 109.47095 * 240.00265 * 21 2 1 24 24 C 1.53004 * 109.47156 * 359.97438 * 21 2 1 25 25 C 1.50702 * 109.47105 * 179.97438 * 24 21 2 26 26 O 1.20824 * 120.00250 * 0.02562 * 25 24 21 27 27 O 1.34229 * 119.99989 * 179.97438 * 25 24 21 28 28 H 1.08999 * 109.47082 * 90.00010 * 1 2 3 29 29 H 1.09003 * 109.47210 * 210.00088 * 1 2 3 30 30 H 1.09004 * 109.47392 * 330.00141 * 1 2 3 31 31 H 1.08998 * 109.46621 * 60.00483 * 5 3 2 32 32 H 1.08996 * 109.47266 * 300.00146 * 5 3 2 33 33 H 1.07999 * 119.96503 * 0.02562 * 7 6 5 34 34 H 1.07992 * 120.03608 * 180.02562 * 8 7 6 35 35 H 0.96996 * 120.00178 * 179.97438 * 14 13 11 36 36 H 1.07996 * 120.03745 * 179.72497 * 19 9 8 37 37 H 1.07997 * 119.96326 * 180.27708 * 20 19 9 38 38 H 1.08995 * 109.46961 * 59.99649 * 22 21 2 39 39 H 1.08995 * 109.47288 * 179.97438 * 22 21 2 40 40 H 1.09005 * 109.47091 * 299.99826 * 22 21 2 41 41 H 1.09003 * 109.47457 * 59.99625 * 23 21 2 42 42 H 1.08995 * 109.47293 * 180.02562 * 23 21 2 43 43 H 1.09004 * 109.46769 * 299.99479 * 23 21 2 44 44 H 1.08998 * 109.47672 * 300.00603 * 24 21 2 45 45 H 1.09005 * 109.46733 * 60.00502 * 24 21 2 46 46 H 0.96697 * 117.00360 * 179.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3517 1.1672 -0.0005 5 6 1.3853 2.4724 -0.0006 6 6 2.3646 3.6177 -0.0011 7 6 2.8130 4.1417 -1.1999 8 6 3.7101 5.1917 -1.2037 9 6 4.1623 5.7211 -0.0020 10 8 5.0437 6.7536 -0.0025 11 6 5.3525 7.2942 -1.1985 12 1 4.9684 6.8526 -2.1061 13 6 6.1632 8.4172 -1.2630 14 7 6.6307 8.9555 -0.1574 15 14 6.5905 9.1667 -2.9198 16 1 5.3439 9.5838 -3.6108 17 1 7.4636 10.3507 -2.7173 18 1 7.3032 8.1616 -3.7488 19 6 3.7151 5.1886 1.2001 20 6 2.8136 4.1424 1.1972 21 6 2.1975 -1.2687 -0.0006 22 6 3.0771 -1.3492 -1.2498 23 6 3.0771 -1.3503 1.2487 24 6 1.2032 -2.4316 -0.0004 25 6 1.9567 -3.7368 -0.0017 26 8 3.1650 -3.7368 -0.0021 27 8 1.2856 -4.8992 -0.0013 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3634 -0.8900 0.5139 30 1 -0.3634 0.8900 0.5138 31 1 0.7584 2.5303 0.8892 32 1 0.7590 2.5299 -0.8908 33 1 2.4607 3.7299 -2.1340 34 1 4.0595 5.6007 -2.1402 35 1 7.1982 9.7409 -0.2026 36 1 4.0683 5.5952 2.1362 37 1 2.4619 3.7308 2.1317 38 1 3.7853 -0.5207 -1.2494 39 1 3.6224 -2.2929 -1.2500 40 1 2.4504 -1.2911 -2.1398 41 1 2.4504 -1.2929 2.1387 42 1 3.6224 -2.2940 1.2481 43 1 3.7854 -0.5218 1.2490 44 1 0.5768 -2.3741 0.8897 45 1 0.5763 -2.3737 -0.8903 46 1 1.8122 -5.7102 -0.0025 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001605966129.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:46:07 Heat of formation + Delta-G solvation = -114.832122 kcal Electronic energy + Delta-G solvation = -28808.798948 eV Core-core repulsion = 24665.072968 eV Total energy + Delta-G solvation = -4143.725980 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.25117 -40.05359 -38.87433 -37.27602 -36.51153 -36.00495 -33.53463 -32.33017 -30.99221 -30.08545 -29.54926 -27.36102 -26.82994 -26.20127 -25.08260 -23.13462 -21.91161 -21.38848 -20.11581 -18.69202 -18.39644 -17.92140 -17.11394 -16.91108 -16.72499 -16.46731 -15.78832 -15.72856 -14.70144 -14.55665 -14.29386 -14.08525 -13.95461 -13.75649 -13.46982 -13.41507 -13.26404 -13.04746 -12.86910 -12.71517 -12.63238 -12.41065 -12.04453 -11.93636 -11.84812 -11.53966 -11.37082 -11.25165 -11.18731 -11.17543 -10.78673 -10.69642 -10.64736 -10.58518 -10.39213 -9.38459 -9.27290 -8.76434 -8.74145 -8.08538 -7.09982 -6.39491 -3.97968 1.74545 2.21667 2.31595 2.46694 2.78757 3.10797 3.16811 3.18814 3.20496 4.01506 4.03817 4.42599 4.55685 4.67532 4.75602 4.88844 4.99111 5.04026 5.10024 5.16677 5.22418 5.29157 5.34309 5.36417 5.41444 5.65205 5.71065 5.75282 5.78934 5.80247 5.83110 5.90795 6.01647 6.27725 6.35813 6.40558 6.48130 6.55178 6.76453 6.97686 7.11061 7.29264 7.34663 7.43388 7.46402 7.51124 7.90389 8.05818 8.34197 9.06101 9.77353 10.78626 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.024659 B = 0.002151 C = 0.002101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1135.199949 B =13014.743679 C =13326.703088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.622 5.622 3 C 0.514 3.486 4 O -0.509 6.509 5 C -0.077 4.077 6 C -0.170 4.170 7 C -0.056 4.056 8 C -0.232 4.232 9 C 0.157 3.843 10 O -0.178 6.178 11 C -0.391 4.391 12 H 0.091 0.909 13 C 0.038 3.962 14 N -0.864 5.864 15 Si 0.941 3.059 16 H -0.270 1.270 17 H -0.278 1.278 18 H -0.270 1.270 19 C -0.192 4.192 20 C -0.059 4.059 21 C 0.191 3.809 22 C -0.176 4.176 23 C -0.176 4.176 24 C -0.118 4.118 25 C 0.482 3.518 26 O -0.498 6.498 27 O -0.518 6.518 28 H 0.056 0.944 29 H 0.072 0.928 30 H 0.077 0.923 31 H 0.091 0.909 32 H 0.090 0.910 33 H 0.103 0.897 34 H 0.126 0.874 35 H 0.270 0.730 36 H 0.116 0.884 37 H 0.107 0.893 38 H 0.083 0.917 39 H 0.084 0.916 40 H 0.047 0.953 41 H 0.047 0.953 42 H 0.084 0.916 43 H 0.083 0.917 44 H 0.113 0.887 45 H 0.112 0.888 46 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.752 -24.110 -0.076 29.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.359 5.359 3 C 0.303 3.697 4 O -0.382 6.382 5 C -0.117 4.117 6 C -0.171 4.171 7 C -0.074 4.074 8 C -0.252 4.252 9 C 0.103 3.897 10 O -0.082 6.082 11 C -0.467 4.467 12 H 0.108 0.892 13 C -0.166 4.166 14 N -0.499 5.499 15 Si 0.765 3.235 16 H -0.195 1.195 17 H -0.203 1.203 18 H -0.195 1.195 19 C -0.211 4.211 20 C -0.077 4.077 21 C 0.107 3.893 22 C -0.233 4.233 23 C -0.233 4.233 24 C -0.156 4.156 25 C 0.324 3.676 26 O -0.385 6.385 27 O -0.331 6.331 28 H 0.075 0.925 29 H 0.090 0.910 30 H 0.095 0.905 31 H 0.109 0.891 32 H 0.109 0.891 33 H 0.121 0.879 34 H 0.144 0.856 35 H 0.080 0.920 36 H 0.134 0.866 37 H 0.125 0.875 38 H 0.102 0.898 39 H 0.102 0.898 40 H 0.066 0.934 41 H 0.066 0.934 42 H 0.102 0.898 43 H 0.102 0.898 44 H 0.131 0.869 45 H 0.130 0.870 46 H 0.271 0.729 Dipole moment (debyes) X Y Z Total from point charges -15.697 -23.402 0.171 28.179 hybrid contribution 0.334 -0.262 -0.912 1.006 sum -15.363 -23.664 -0.741 28.223 Atomic orbital electron populations 1.21923 0.80100 1.03512 1.01983 1.48109 1.06452 1.05336 1.75984 1.20984 0.88449 0.84662 0.75634 1.90694 1.13868 1.86758 1.46893 1.20445 0.97479 0.90217 1.03556 1.18639 1.04712 1.00055 0.93686 1.20490 0.95816 0.94986 0.96133 1.21096 1.04200 1.01483 0.98371 1.19386 0.88477 0.88566 0.93278 1.83975 1.50998 1.40320 1.32894 1.21273 1.31529 1.10755 0.83138 0.89163 1.25284 0.96311 0.95746 0.99236 1.70030 1.31625 1.21225 1.27007 0.85788 0.78778 0.78648 0.80244 1.19541 1.20316 1.19525 1.20147 1.03410 1.01343 0.96184 1.20382 0.96052 0.95026 0.96278 1.19993 0.90375 0.81099 0.97843 1.22465 1.00685 1.05291 0.94901 1.22471 1.00694 1.05296 0.94885 1.21712 0.99154 0.88532 1.06228 1.23115 0.86728 0.85779 0.71966 1.90683 1.15722 1.87491 1.44613 1.84513 1.45627 1.17232 1.85704 0.92522 0.90975 0.90485 0.89097 0.89146 0.87924 0.85648 0.92034 0.86602 0.87478 0.89771 0.89789 0.93379 0.93369 0.89791 0.89770 0.86937 0.87019 0.72881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.38 9.40 59.85 0.56 0.94 16 2 N -0.62 -6.18 2.82 -166.59 -0.47 -6.65 16 3 C 0.51 7.06 7.09 -10.98 -0.08 6.98 16 4 O -0.51 -9.29 12.24 5.55 0.07 -9.22 16 5 C -0.08 -0.96 4.38 -29.04 -0.13 -1.09 16 6 C -0.17 -2.97 4.38 -104.58 -0.46 -3.43 16 7 C -0.06 -1.07 9.69 -39.61 -0.38 -1.46 16 8 C -0.23 -5.28 9.17 -39.39 -0.36 -5.65 16 9 C 0.16 3.95 6.65 -39.11 -0.26 3.69 16 10 O -0.18 -5.26 9.76 0.05 0.00 -5.26 16 11 C -0.39 -11.22 9.49 30.89 0.29 -10.93 16 12 H 0.09 2.40 5.20 -52.49 -0.27 2.13 16 13 C 0.04 1.08 5.49 -17.51 -0.10 0.98 16 14 N -0.86 -25.87 13.67 55.48 0.76 -25.11 16 15 Si 0.94 21.00 29.55 -169.99 -5.02 15.98 16 16 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 17 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 18 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 19 C -0.19 -4.25 9.99 -39.39 -0.39 -4.65 16 20 C -0.06 -1.10 9.69 -39.61 -0.38 -1.49 16 21 C 0.19 1.93 0.78 -131.82 -0.10 1.83 16 22 C -0.18 -2.10 8.10 37.16 0.30 -1.80 16 23 C -0.18 -2.08 8.10 37.16 0.30 -1.78 16 24 C -0.12 -0.75 3.64 -27.88 -0.10 -0.86 16 25 C 0.48 3.62 7.74 36.01 0.28 3.89 16 26 O -0.50 -5.30 12.11 -18.75 -0.23 -5.52 16 27 O -0.52 -2.62 13.42 -39.26 -0.53 -3.15 16 28 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 29 H 0.07 0.25 5.76 -51.93 -0.30 -0.05 16 30 H 0.08 0.37 6.44 -51.93 -0.33 0.04 16 31 H 0.09 0.91 7.34 -51.93 -0.38 0.53 16 32 H 0.09 0.93 8.05 -51.93 -0.42 0.51 16 33 H 0.10 1.70 8.06 -52.49 -0.42 1.27 16 34 H 0.13 2.85 5.64 -52.49 -0.30 2.55 16 35 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 36 H 0.12 2.48 8.06 -52.49 -0.42 2.06 16 37 H 0.11 1.68 8.06 -52.49 -0.42 1.26 16 38 H 0.08 1.28 6.17 -51.93 -0.32 0.96 16 39 H 0.08 1.02 5.52 -51.93 -0.29 0.74 16 40 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.08 1.02 5.52 -51.93 -0.29 0.73 16 43 H 0.08 1.27 6.17 -51.93 -0.32 0.95 16 44 H 0.11 0.50 6.88 -51.93 -0.36 0.14 16 45 H 0.11 0.52 7.78 -51.93 -0.40 0.11 16 46 H 0.41 0.53 9.10 45.56 0.41 0.95 16 LS Contribution 371.18 15.07 5.59 5.59 Total: -1.00 -36.66 371.18 -6.07 -42.73 By element: Atomic # 1 Polarization: 10.66 SS G_CDS: -5.23 Total: 5.43 kcal Atomic # 6 Polarization: -13.80 SS G_CDS: -1.01 Total: -14.81 kcal Atomic # 7 Polarization: -32.05 SS G_CDS: 0.29 Total: -31.76 kcal Atomic # 8 Polarization: -22.47 SS G_CDS: -0.69 Total: -23.16 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -36.66 -6.07 -42.73 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001605966129.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.101 kcal (2) G-P(sol) polarization free energy of solvation -36.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds