Wall clock time and date at job start Tue Mar 31 2020 18:46:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34775 * 119.99805 * 2 1 4 4 O 1.21287 * 119.99798 * 180.02562 * 3 2 1 5 5 C 1.50705 * 120.00246 * 359.97438 * 3 2 1 6 6 C 1.50695 * 109.46992 * 180.02562 * 5 3 2 7 7 C 1.38299 * 119.93247 * 90.00201 * 6 5 3 8 8 C 1.38101 * 120.07425 * 179.97438 * 7 6 5 9 9 C 1.38886 * 119.92536 * 0.02562 * 8 7 6 10 10 O 1.35750 * 120.06440 * 180.02562 * 9 8 7 11 11 C 1.34828 * 117.00075 * 5.53777 * 10 9 8 12 12 H 1.07993 * 120.00518 * 354.94289 * 11 10 9 13 13 C 1.38663 * 119.99751 * 174.94575 * 11 10 9 14 14 N 1.31556 * 120.00220 * 359.97438 * 13 11 10 15 15 Si 1.86795 * 119.99821 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.47517 * 59.99414 * 15 13 11 17 17 H 1.48505 * 109.47332 * 179.97438 * 15 13 11 18 18 H 1.48502 * 109.46989 * 299.99567 * 15 13 11 19 19 C 1.38874 * 119.86623 * 0.27854 * 9 8 7 20 20 C 1.38106 * 119.92542 * 359.44577 * 19 9 8 21 21 C 1.46495 * 120.00023 * 180.02562 * 2 1 3 22 22 C 1.52995 * 109.47334 * 120.00085 * 21 2 1 23 23 C 1.53002 * 109.47095 * 240.00265 * 21 2 1 24 24 C 1.53004 * 109.47156 * 359.97438 * 21 2 1 25 25 C 1.50702 * 109.47105 * 179.97438 * 24 21 2 26 26 O 1.20824 * 120.00250 * 0.02562 * 25 24 21 27 27 O 1.34229 * 119.99989 * 179.97438 * 25 24 21 28 28 H 1.08999 * 109.47082 * 90.00010 * 1 2 3 29 29 H 1.09003 * 109.47210 * 210.00088 * 1 2 3 30 30 H 1.09004 * 109.47392 * 330.00141 * 1 2 3 31 31 H 1.08998 * 109.46621 * 60.00483 * 5 3 2 32 32 H 1.08996 * 109.47266 * 300.00146 * 5 3 2 33 33 H 1.07999 * 119.96503 * 0.02562 * 7 6 5 34 34 H 1.07992 * 120.03608 * 180.02562 * 8 7 6 35 35 H 0.96996 * 120.00178 * 179.97438 * 14 13 11 36 36 H 1.07996 * 120.03745 * 179.72497 * 19 9 8 37 37 H 1.07997 * 119.96326 * 180.27708 * 20 19 9 38 38 H 1.08995 * 109.46961 * 59.99649 * 22 21 2 39 39 H 1.08995 * 109.47288 * 179.97438 * 22 21 2 40 40 H 1.09005 * 109.47091 * 299.99826 * 22 21 2 41 41 H 1.09003 * 109.47457 * 59.99625 * 23 21 2 42 42 H 1.08995 * 109.47293 * 180.02562 * 23 21 2 43 43 H 1.09004 * 109.46769 * 299.99479 * 23 21 2 44 44 H 1.08998 * 109.47672 * 300.00603 * 24 21 2 45 45 H 1.09005 * 109.46733 * 60.00502 * 24 21 2 46 46 H 0.96697 * 117.00360 * 179.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3517 1.1672 -0.0005 5 6 1.3853 2.4724 -0.0006 6 6 2.3646 3.6177 -0.0011 7 6 2.8130 4.1417 -1.1999 8 6 3.7101 5.1917 -1.2037 9 6 4.1623 5.7211 -0.0020 10 8 5.0437 6.7536 -0.0025 11 6 5.3525 7.2942 -1.1985 12 1 4.9684 6.8526 -2.1061 13 6 6.1632 8.4172 -1.2630 14 7 6.6307 8.9555 -0.1574 15 14 6.5905 9.1667 -2.9198 16 1 5.3439 9.5838 -3.6108 17 1 7.4636 10.3507 -2.7173 18 1 7.3032 8.1616 -3.7488 19 6 3.7151 5.1886 1.2001 20 6 2.8136 4.1424 1.1972 21 6 2.1975 -1.2687 -0.0006 22 6 3.0771 -1.3492 -1.2498 23 6 3.0771 -1.3503 1.2487 24 6 1.2032 -2.4316 -0.0004 25 6 1.9567 -3.7368 -0.0017 26 8 3.1650 -3.7368 -0.0021 27 8 1.2856 -4.8992 -0.0013 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3634 -0.8900 0.5139 30 1 -0.3634 0.8900 0.5138 31 1 0.7584 2.5303 0.8892 32 1 0.7590 2.5299 -0.8908 33 1 2.4607 3.7299 -2.1340 34 1 4.0595 5.6007 -2.1402 35 1 7.1982 9.7409 -0.2026 36 1 4.0683 5.5952 2.1362 37 1 2.4619 3.7308 2.1317 38 1 3.7853 -0.5207 -1.2494 39 1 3.6224 -2.2929 -1.2500 40 1 2.4504 -1.2911 -2.1398 41 1 2.4504 -1.2929 2.1387 42 1 3.6224 -2.2940 1.2481 43 1 3.7854 -0.5218 1.2490 44 1 0.5768 -2.3741 0.8897 45 1 0.5763 -2.3737 -0.8903 46 1 1.8122 -5.7102 -0.0025 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001605966129.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:46:06 Heat of formation + Delta-G solvation = -141.206990 kcal Electronic energy + Delta-G solvation = -28809.942648 eV Core-core repulsion = 24665.072968 eV Total energy + Delta-G solvation = -4144.869680 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.94762 -41.02787 -40.48807 -38.49418 -37.63673 -36.86066 -34.53943 -34.19277 -32.38150 -31.75975 -30.17315 -28.29834 -28.25839 -27.15636 -26.73397 -23.92797 -23.62553 -22.55794 -21.28041 -19.83794 -19.38665 -19.10368 -18.81457 -17.72634 -17.57766 -17.01446 -16.77229 -16.72496 -16.31430 -16.13674 -15.72396 -15.51055 -15.19200 -14.95423 -14.81962 -14.55582 -14.35102 -14.10820 -13.91511 -13.64251 -13.58327 -13.51701 -13.28247 -12.95869 -12.88688 -12.66835 -12.56167 -12.44770 -12.31365 -12.25218 -12.15466 -12.11381 -12.05129 -12.01164 -11.32198 -11.17647 -10.80350 -10.42341 -9.75164 -9.54231 -8.88160 -8.47015 -6.15248 0.62655 0.68659 1.22770 1.33325 1.44511 1.50191 1.76010 1.79838 2.17857 2.47947 2.84322 3.16962 3.39620 3.52752 3.83684 3.87831 3.99458 4.05995 4.12810 4.20214 4.35372 4.44899 4.47980 4.51336 4.55091 4.60855 4.71173 4.78276 4.80917 4.85396 4.87600 4.92214 4.95499 5.08120 5.12999 5.14990 5.29182 5.32060 5.37956 5.57802 5.70269 5.72550 5.79733 5.81002 6.03114 6.23965 6.52970 6.97185 7.03373 7.38850 7.79083 8.76259 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.024659 B = 0.002151 C = 0.002101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1135.199949 B =13014.743679 C =13326.703088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.053 3.947 2 N -0.610 5.610 3 C 0.509 3.491 4 O -0.568 6.568 5 C -0.075 4.075 6 C -0.143 4.143 7 C -0.060 4.060 8 C -0.244 4.244 9 C 0.111 3.889 10 O -0.234 6.234 11 C -0.414 4.414 12 H 0.100 0.900 13 C -0.025 4.025 14 N -0.922 5.922 15 Si 1.020 2.980 16 H -0.255 1.255 17 H -0.270 1.270 18 H -0.260 1.260 19 C -0.207 4.207 20 C -0.057 4.057 21 C 0.190 3.810 22 C -0.171 4.171 23 C -0.170 4.170 24 C -0.112 4.112 25 C 0.485 3.515 26 O -0.539 6.539 27 O -0.510 6.510 28 H 0.076 0.924 29 H 0.100 0.900 30 H 0.092 0.908 31 H 0.130 0.870 32 H 0.126 0.874 33 H 0.136 0.864 34 H 0.116 0.884 35 H 0.273 0.727 36 H 0.110 0.890 37 H 0.145 0.855 38 H 0.043 0.957 39 H 0.076 0.924 40 H 0.061 0.939 41 H 0.063 0.937 42 H 0.076 0.924 43 H 0.043 0.957 44 H 0.143 0.857 45 H 0.140 0.860 46 H 0.428 0.572 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.341 -27.065 -1.116 34.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 N -0.345 5.345 3 C 0.298 3.702 4 O -0.446 6.446 5 C -0.114 4.114 6 C -0.144 4.144 7 C -0.078 4.078 8 C -0.263 4.263 9 C 0.061 3.939 10 O -0.141 6.141 11 C -0.491 4.491 12 H 0.117 0.883 13 C -0.222 4.222 14 N -0.560 5.560 15 Si 0.839 3.161 16 H -0.179 1.179 17 H -0.194 1.194 18 H -0.184 1.184 19 C -0.226 4.226 20 C -0.075 4.075 21 C 0.106 3.894 22 C -0.228 4.228 23 C -0.228 4.228 24 C -0.149 4.149 25 C 0.329 3.671 26 O -0.430 6.430 27 O -0.324 6.324 28 H 0.094 0.906 29 H 0.119 0.881 30 H 0.110 0.890 31 H 0.148 0.852 32 H 0.144 0.856 33 H 0.154 0.846 34 H 0.134 0.866 35 H 0.082 0.918 36 H 0.129 0.871 37 H 0.163 0.837 38 H 0.062 0.938 39 H 0.095 0.905 40 H 0.080 0.920 41 H 0.082 0.918 42 H 0.094 0.906 43 H 0.062 0.938 44 H 0.161 0.839 45 H 0.158 0.842 46 H 0.290 0.710 Dipole moment (debyes) X Y Z Total from point charges -20.396 -26.450 -0.864 33.412 hybrid contribution 1.505 0.262 -0.486 1.603 sum -18.891 -26.188 -1.349 32.318 Atomic orbital electron populations 1.22374 0.76635 1.05815 1.04005 1.48060 1.08436 1.03987 1.73967 1.21143 0.87763 0.86040 0.75241 1.90717 1.16405 1.87660 1.49862 1.20573 0.96428 0.87112 1.07264 1.19277 1.03045 0.99733 0.92323 1.20911 0.94636 0.93675 0.98571 1.21219 1.05250 1.02725 0.97153 1.19941 0.89657 0.88916 0.95395 1.83935 1.53911 1.42776 1.33502 1.21776 1.32165 1.11496 0.83620 0.88318 1.26632 0.95827 0.95879 1.03904 1.70184 1.33517 1.22388 1.29900 0.84636 0.79078 0.77779 0.74615 1.17885 1.19438 1.18441 1.20436 1.04457 1.02558 0.95190 1.20855 0.94483 0.93444 0.98714 1.19904 0.91089 0.82836 0.95611 1.22371 1.00531 1.03137 0.96806 1.22375 1.00541 1.03140 0.96769 1.21702 0.98146 0.85984 1.09040 1.23347 0.86184 0.86740 0.70832 1.90691 1.17548 1.88061 1.46667 1.84470 1.45508 1.17452 1.84974 0.90574 0.88124 0.88986 0.85206 0.85592 0.84573 0.86605 0.91839 0.87140 0.83683 0.93804 0.90536 0.91989 0.91820 0.90562 0.93778 0.83913 0.84174 0.70990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.23 9.40 127.77 1.20 1.43 16 2 N -0.61 -9.53 2.82 -799.37 -2.26 -11.79 16 3 C 0.51 12.36 7.09 87.66 0.62 12.98 16 4 O -0.57 -20.53 12.24 -3.05 -0.04 -20.57 16 5 C -0.07 -1.48 4.38 29.10 0.13 -1.35 16 6 C -0.14 -4.61 4.38 -19.84 -0.09 -4.69 16 7 C -0.06 -2.21 9.69 22.25 0.22 -2.00 16 8 C -0.24 -11.48 9.17 22.39 0.21 -11.27 16 9 C 0.11 5.94 6.65 22.58 0.15 6.09 16 10 O -0.23 -14.94 9.76 -22.72 -0.22 -15.16 16 11 C -0.41 -25.36 9.49 67.92 0.64 -24.71 16 12 H 0.10 5.57 5.20 -2.91 -0.02 5.56 16 13 C -0.03 -1.50 5.49 84.84 0.47 -1.03 16 14 N -0.92 -58.60 13.67 21.62 0.30 -58.30 16 15 Si 1.02 44.56 29.55 68.60 2.03 46.59 16 16 H -0.25 -10.34 7.11 99.48 0.71 -9.64 16 17 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 18 H -0.26 -10.78 7.11 99.48 0.71 -10.07 16 19 C -0.21 -9.54 9.99 22.39 0.22 -9.32 16 20 C -0.06 -2.05 9.69 22.25 0.22 -1.83 16 21 C 0.19 3.34 0.78 3.60 0.00 3.34 16 22 C -0.17 -3.96 8.10 71.98 0.58 -3.37 16 23 C -0.17 -3.89 8.10 71.98 0.58 -3.31 16 24 C -0.11 -0.90 3.64 29.85 0.11 -0.79 16 25 C 0.49 5.85 7.74 71.24 0.55 6.40 16 26 O -0.54 -10.93 12.11 21.97 0.27 -10.66 16 27 O -0.51 -3.35 13.42 -51.41 -0.69 -4.04 16 28 H 0.08 0.14 8.14 -2.39 -0.02 0.12 16 29 H 0.10 -0.07 5.76 -2.39 -0.01 -0.08 16 30 H 0.09 0.20 6.44 -2.38 -0.02 0.19 16 31 H 0.13 1.68 7.34 -2.39 -0.02 1.66 16 32 H 0.13 1.73 8.05 -2.39 -0.02 1.71 16 33 H 0.14 4.08 8.06 -2.91 -0.02 4.06 16 34 H 0.12 5.52 5.64 -2.91 -0.02 5.51 16 35 H 0.27 15.86 8.31 -92.71 -0.77 15.09 16 36 H 0.11 5.04 8.06 -2.91 -0.02 5.02 16 37 H 0.15 4.07 8.06 -2.91 -0.02 4.05 16 38 H 0.04 1.38 6.17 -2.39 -0.01 1.36 16 39 H 0.08 1.88 5.52 -2.39 -0.01 1.87 16 40 H 0.06 1.20 8.14 -2.38 -0.02 1.18 16 41 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 42 H 0.08 1.85 5.52 -2.39 -0.01 1.84 16 43 H 0.04 1.37 6.17 -2.38 -0.01 1.36 16 44 H 0.14 0.36 6.88 -2.39 -0.02 0.34 16 45 H 0.14 0.42 7.78 -2.38 -0.02 0.41 16 46 H 0.43 -0.11 9.10 -74.06 -0.67 -0.79 16 Total: -1.00 -91.57 371.18 5.56 -86.01 By element: Atomic # 1 Polarization: 21.00 SS G_CDS: 0.36 Total: 21.36 kcal Atomic # 6 Polarization: -39.26 SS G_CDS: 5.81 Total: -33.44 kcal Atomic # 7 Polarization: -68.13 SS G_CDS: -1.96 Total: -70.09 kcal Atomic # 8 Polarization: -49.75 SS G_CDS: -0.68 Total: -50.43 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.59 kcal Total: -91.57 5.56 -86.01 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001605966129.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.196 kcal (2) G-P(sol) polarization free energy of solvation -91.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds