Wall clock time and date at job start Tue Mar 31 2020 18:37:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.46980 * 2 1 4 4 C 1.53000 * 109.47102 * 119.99918 * 2 1 3 5 5 C 1.53008 * 109.47044 * 299.99791 * 4 2 1 6 6 N 1.46494 * 109.46938 * 179.97438 * 5 4 2 7 7 C 1.34784 * 119.99938 * 179.97438 * 6 5 4 8 8 O 1.21287 * 119.99845 * 0.02562 * 7 6 5 9 9 C 1.50701 * 119.99892 * 180.02562 * 7 6 5 10 10 C 1.50699 * 109.46735 * 180.02562 * 9 7 6 11 11 C 1.38305 * 119.93408 * 89.99836 * 10 9 7 12 12 C 1.38101 * 120.07071 * 179.97438 * 11 10 9 13 13 C 1.38876 * 119.92956 * 0.02562 * 12 11 10 14 14 O 1.35750 * 120.06861 * 180.02562 * 13 12 11 15 15 C 1.34828 * 117.00075 * 5.53840 * 14 13 12 16 16 H 1.08003 * 120.00029 * 354.94359 * 15 14 13 17 17 C 1.38659 * 120.00122 * 174.94542 * 15 14 13 18 18 N 1.31558 * 119.99705 * 180.02562 * 17 15 14 19 19 Si 1.86795 * 120.00035 * 359.97438 * 17 15 14 20 20 H 1.48498 * 109.47181 * 89.99980 * 19 17 15 21 21 H 1.48498 * 109.47260 * 210.00361 * 19 17 15 22 22 H 1.48502 * 109.47130 * 330.00179 * 19 17 15 23 23 C 1.38880 * 119.86555 * 0.27954 * 13 12 11 24 24 C 1.38102 * 119.92551 * 359.44514 * 23 13 12 25 25 C 1.50690 * 109.47220 * 239.99654 * 2 1 3 26 26 O 1.20826 * 120.00436 * 240.00224 * 25 2 1 27 27 O 1.34238 * 119.99783 * 59.99862 * 25 2 1 28 28 H 1.09004 * 109.46906 * 299.99974 * 1 2 3 29 29 H 1.08995 * 109.47253 * 60.00089 * 1 2 3 30 30 H 1.08996 * 109.47268 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46966 * 180.02562 * 3 2 1 32 32 H 1.08998 * 109.47060 * 299.99509 * 3 2 1 33 33 H 1.09004 * 109.47497 * 59.99748 * 3 2 1 34 34 H 1.08997 * 109.47389 * 180.02562 * 4 2 1 35 35 H 1.08996 * 109.47385 * 59.99672 * 4 2 1 36 36 H 1.09003 * 109.47040 * 60.00153 * 5 4 2 37 37 H 1.08996 * 109.46932 * 300.00158 * 5 4 2 38 38 H 0.97005 * 120.00412 * 0.02562 * 6 5 4 39 39 H 1.08986 * 109.47293 * 59.99986 * 9 7 6 40 40 H 1.09005 * 109.47046 * 299.99669 * 9 7 6 41 41 H 1.07999 * 119.96326 * 0.02562 * 11 10 9 42 42 H 1.07997 * 120.03156 * 180.02562 * 12 11 10 43 43 H 0.96997 * 119.99350 * 179.97438 * 18 17 15 44 44 H 1.07996 * 120.04097 * 179.72435 * 23 13 12 45 45 H 1.07997 * 119.96688 * 180.27743 * 24 23 13 46 46 H 0.96701 * 116.99510 * 180.02562 * 27 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.5300 0.0001 2.4985 6 7 2.0178 -0.6908 3.6947 7 6 1.6926 -0.2301 4.9188 8 8 0.9957 0.7563 5.0301 9 6 2.1949 -0.9405 6.1493 10 6 1.6925 -0.2301 7.3797 11 6 0.4838 -0.5967 7.9431 12 6 0.0209 0.0521 9.0709 13 6 0.7703 1.0740 9.6391 14 8 0.3183 1.7132 10.7480 15 6 -0.8069 1.2335 11.3152 16 1 -1.3508 0.4302 10.8406 17 6 -1.2659 1.7716 12.5079 18 7 -2.3635 1.3031 13.0616 19 14 -0.3249 3.1606 13.3292 20 1 -0.8338 4.4644 12.8330 21 1 -0.5125 3.0835 14.8003 22 1 1.1196 3.0380 13.0073 23 6 1.9806 1.4441 9.0673 24 6 2.4407 0.7876 7.9428 25 6 2.0323 -0.7104 -1.2303 26 8 2.7270 -1.6928 -1.1195 27 8 1.7080 -0.2519 -2.4496 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 3.1300 1.4425 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6766 1.9564 0.8900 34 1 3.1300 -0.7209 1.2495 35 1 1.6767 -1.7488 1.2493 36 1 0.4400 0.0001 2.4985 37 1 1.8933 1.0277 2.4984 38 1 2.5755 -1.4795 3.6057 39 1 3.2848 -0.9409 6.1491 40 1 1.8311 -1.9681 6.1495 41 1 -0.0983 -1.3918 7.5010 42 1 -0.9228 -0.2350 9.5106 43 1 -2.6843 1.6793 13.8961 44 1 2.5635 2.2414 9.5042 45 1 3.3840 1.0719 7.5003 46 1 2.0535 -0.7411 -3.2088 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001609674710.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:37:08 Heat of formation + Delta-G solvation = -144.113601 kcal Electronic energy + Delta-G solvation = -27557.924719 eV Core-core repulsion = 23412.929000 eV Total energy + Delta-G solvation = -4144.995720 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.13607 -39.84577 -38.93706 -37.54789 -36.63303 -36.47445 -34.39172 -32.48204 -31.63030 -30.19465 -29.39377 -27.95637 -26.82344 -25.51931 -24.82241 -23.17086 -22.05205 -21.08025 -20.28453 -19.60626 -18.37520 -17.84784 -17.30376 -17.16444 -16.84088 -16.30424 -15.88426 -15.83507 -15.00076 -14.81168 -14.46543 -14.23211 -14.13600 -13.94675 -13.75051 -13.50154 -13.48731 -13.41320 -12.95287 -12.65408 -12.54409 -12.39631 -12.16597 -12.07377 -11.98176 -11.88337 -11.62167 -11.53832 -11.32540 -11.26597 -10.89302 -10.79615 -10.74579 -10.62107 -10.11577 -9.74824 -9.34209 -9.15519 -8.82400 -8.18724 -7.26069 -6.37932 -4.04162 1.69805 2.18909 2.20680 2.44390 2.75606 3.16824 3.26017 3.28594 3.43183 4.06696 4.17876 4.25698 4.27156 4.51647 4.64989 4.76815 4.79575 4.88927 4.99750 5.12397 5.13563 5.13935 5.22805 5.25456 5.27068 5.33839 5.41856 5.48308 5.58740 5.65342 5.70736 5.75439 5.79443 5.80868 5.98476 6.17995 6.31402 6.37955 6.61454 6.84367 7.06945 7.26969 7.35440 7.37589 7.43281 7.66588 7.84770 8.08216 8.29975 8.97529 9.60700 10.69792 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.029144 B = 0.001723 C = 0.001707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 960.506662 B =16246.634489 C =16401.564939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.047 4.047 3 C -0.149 4.149 4 C -0.114 4.114 5 C 0.117 3.883 6 N -0.741 5.741 7 C 0.509 3.491 8 O -0.520 6.520 9 C -0.082 4.082 10 C -0.161 4.161 11 C -0.058 4.058 12 C -0.219 4.219 13 C 0.162 3.838 14 O -0.218 6.218 15 C -0.388 4.388 16 H 0.106 0.894 17 C 0.062 3.938 18 N -0.881 5.881 19 Si 0.906 3.094 20 H -0.274 1.274 21 H -0.283 1.283 22 H -0.260 1.260 23 C -0.191 4.191 24 C -0.062 4.062 25 C 0.489 3.511 26 O -0.514 6.514 27 O -0.513 6.513 28 H 0.081 0.919 29 H 0.072 0.928 30 H 0.063 0.937 31 H 0.062 0.938 32 H 0.072 0.928 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.072 0.928 37 H 0.071 0.929 38 H 0.399 0.601 39 H 0.093 0.907 40 H 0.093 0.907 41 H 0.107 0.893 42 H 0.133 0.867 43 H 0.279 0.721 44 H 0.116 0.884 45 H 0.110 0.890 46 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.342 -5.118 -28.621 30.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.049 4.049 3 C -0.206 4.206 4 C -0.152 4.152 5 C -0.007 4.007 6 N -0.395 5.395 7 C 0.296 3.704 8 O -0.394 6.394 9 C -0.122 4.122 10 C -0.162 4.162 11 C -0.077 4.077 12 C -0.239 4.239 13 C 0.110 3.890 14 O -0.123 6.123 15 C -0.464 4.464 16 H 0.124 0.876 17 C -0.141 4.141 18 N -0.519 5.519 19 Si 0.731 3.269 20 H -0.199 1.199 21 H -0.209 1.209 22 H -0.184 1.184 23 C -0.211 4.211 24 C -0.080 4.080 25 C 0.331 3.669 26 O -0.401 6.401 27 O -0.324 6.324 28 H 0.099 0.901 29 H 0.091 0.909 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.091 0.909 33 H 0.099 0.901 34 H 0.098 0.902 35 H 0.099 0.901 36 H 0.090 0.910 37 H 0.090 0.910 38 H 0.233 0.767 39 H 0.111 0.889 40 H 0.112 0.888 41 H 0.125 0.875 42 H 0.150 0.850 43 H 0.089 0.911 44 H 0.134 0.866 45 H 0.128 0.872 46 H 0.269 0.731 Dipole moment (debyes) X Y Z Total from point charges 9.775 -4.218 -27.835 29.802 hybrid contribution 0.647 -0.319 -0.285 0.776 sum 10.422 -4.536 -28.120 30.330 Atomic orbital electron populations 1.21995 0.91082 1.03293 1.04221 1.20399 0.98325 0.96842 0.89327 1.21993 1.01703 0.92656 1.04210 1.21716 1.02174 0.99906 0.91428 1.21416 0.99757 0.96486 0.83030 1.46057 1.55207 1.32659 1.05592 1.21025 0.80238 0.84897 0.84238 1.90749 1.36470 1.25697 1.86527 1.20426 1.01718 0.99526 0.90506 1.18706 0.97753 1.01757 0.98023 1.20568 0.94287 0.98126 0.94679 1.21223 1.02683 1.00610 0.99338 1.19127 0.92036 0.90594 0.87252 1.83567 1.41539 1.50991 1.36251 1.20776 0.99127 1.20315 1.06149 0.87636 1.24468 0.95928 0.98313 0.95350 1.69651 1.21170 1.41696 1.19356 0.86173 0.81302 0.81472 0.77909 1.19907 1.20860 1.18361 1.20149 0.96351 1.04749 0.99802 1.20400 0.98371 0.94617 0.94634 1.23427 0.76626 0.82109 0.84771 1.90730 1.35880 1.26216 1.87312 1.84532 1.72183 1.58927 1.16794 0.90060 0.90898 0.91815 0.91844 0.90907 0.90070 0.90154 0.90128 0.91024 0.91047 0.76718 0.88857 0.88833 0.87534 0.84970 0.91112 0.86566 0.87211 0.73148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.80 8.05 37.16 0.30 -0.50 16 2 C -0.05 -0.28 0.74 -155.67 -0.11 -0.40 16 3 C -0.15 -0.78 8.05 37.16 0.30 -0.48 16 4 C -0.11 -0.73 3.67 -26.73 -0.10 -0.83 16 5 C 0.12 0.95 4.97 -4.04 -0.02 0.93 16 6 N -0.74 -6.62 5.56 -60.29 -0.33 -6.95 16 7 C 0.51 6.62 7.82 -10.98 -0.09 6.54 16 8 O -0.52 -9.35 16.03 5.55 0.09 -9.26 16 9 C -0.08 -0.97 5.83 -29.03 -0.17 -1.14 16 10 C -0.16 -2.72 4.38 -104.57 -0.46 -3.17 16 11 C -0.06 -1.09 9.69 -39.61 -0.38 -1.48 16 12 C -0.22 -4.91 9.17 -39.40 -0.36 -5.27 16 13 C 0.16 3.88 6.65 -39.11 -0.26 3.62 16 14 O -0.22 -5.92 8.59 0.05 0.00 -5.92 16 15 C -0.39 -11.16 9.95 30.89 0.31 -10.85 16 16 H 0.11 3.10 5.44 -52.48 -0.29 2.81 16 17 C 0.06 1.78 5.49 -17.51 -0.10 1.68 16 18 N -0.88 -25.76 13.96 55.48 0.77 -24.99 16 19 Si 0.91 22.05 28.62 -169.99 -4.86 17.18 16 20 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 21 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 22 H -0.26 -6.33 7.11 56.52 0.40 -5.93 16 23 C -0.19 -3.95 9.99 -39.39 -0.39 -4.34 16 24 C -0.06 -1.09 9.69 -39.61 -0.38 -1.48 16 25 C 0.49 3.50 6.92 36.00 0.25 3.75 16 26 O -0.51 -5.20 16.74 -18.75 -0.31 -5.51 16 27 O -0.51 -2.54 13.23 -39.28 -0.52 -3.06 16 28 H 0.08 0.45 6.43 -51.93 -0.33 0.11 16 29 H 0.07 0.35 8.11 -51.93 -0.42 -0.07 16 30 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.07 0.35 8.11 -51.93 -0.42 -0.07 16 33 H 0.08 0.43 6.43 -51.93 -0.33 0.10 16 34 H 0.08 0.52 8.10 -51.93 -0.42 0.10 16 35 H 0.08 0.53 8.10 -51.93 -0.42 0.11 16 36 H 0.07 0.64 6.43 -51.93 -0.33 0.30 16 37 H 0.07 0.62 6.43 -51.93 -0.33 0.29 16 38 H 0.40 2.40 8.47 -40.82 -0.35 2.06 16 39 H 0.09 0.86 8.08 -51.94 -0.42 0.44 16 40 H 0.09 0.90 8.08 -51.93 -0.42 0.48 16 41 H 0.11 1.73 8.06 -52.49 -0.42 1.31 16 42 H 0.13 3.09 5.64 -52.49 -0.30 2.80 16 43 H 0.28 7.53 8.31 -40.82 -0.34 7.19 16 44 H 0.12 2.23 8.06 -52.49 -0.42 1.81 16 45 H 0.11 1.60 8.06 -52.49 -0.42 1.17 16 46 H 0.41 0.45 9.10 45.56 0.41 0.86 16 LS Contribution 386.84 15.07 5.83 5.83 Total: -1.00 -36.15 386.84 -6.63 -42.78 By element: Atomic # 1 Polarization: 8.97 SS G_CDS: -5.62 Total: 3.35 kcal Atomic # 6 Polarization: -11.77 SS G_CDS: -1.67 Total: -13.44 kcal Atomic # 7 Polarization: -32.38 SS G_CDS: 0.44 Total: -31.94 kcal Atomic # 8 Polarization: -23.01 SS G_CDS: -0.74 Total: -23.76 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -4.86 Total: 17.18 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -36.15 -6.63 -42.78 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609674710.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.337 kcal (2) G-P(sol) polarization free energy of solvation -36.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.777 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds