Wall clock time and date at job start Tue Mar 31 2020 18:37:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.46980 * 2 1 4 4 C 1.53000 * 109.47102 * 119.99918 * 2 1 3 5 5 C 1.53008 * 109.47044 * 299.99791 * 4 2 1 6 6 N 1.46494 * 109.46938 * 179.97438 * 5 4 2 7 7 C 1.34784 * 119.99938 * 179.97438 * 6 5 4 8 8 O 1.21287 * 119.99845 * 0.02562 * 7 6 5 9 9 C 1.50701 * 119.99892 * 180.02562 * 7 6 5 10 10 C 1.50699 * 109.46735 * 180.02562 * 9 7 6 11 11 C 1.38305 * 119.93408 * 89.99836 * 10 9 7 12 12 C 1.38101 * 120.07071 * 179.97438 * 11 10 9 13 13 C 1.38876 * 119.92956 * 0.02562 * 12 11 10 14 14 O 1.35750 * 120.06861 * 180.02562 * 13 12 11 15 15 C 1.34828 * 117.00075 * 5.53840 * 14 13 12 16 16 H 1.08003 * 120.00029 * 354.94359 * 15 14 13 17 17 C 1.38659 * 120.00122 * 174.94542 * 15 14 13 18 18 N 1.31558 * 119.99705 * 180.02562 * 17 15 14 19 19 Si 1.86795 * 120.00035 * 359.97438 * 17 15 14 20 20 H 1.48498 * 109.47181 * 89.99980 * 19 17 15 21 21 H 1.48498 * 109.47260 * 210.00361 * 19 17 15 22 22 H 1.48502 * 109.47130 * 330.00179 * 19 17 15 23 23 C 1.38880 * 119.86555 * 0.27954 * 13 12 11 24 24 C 1.38102 * 119.92551 * 359.44514 * 23 13 12 25 25 C 1.50690 * 109.47220 * 239.99654 * 2 1 3 26 26 O 1.20826 * 120.00436 * 240.00224 * 25 2 1 27 27 O 1.34238 * 119.99783 * 59.99862 * 25 2 1 28 28 H 1.09004 * 109.46906 * 299.99974 * 1 2 3 29 29 H 1.08995 * 109.47253 * 60.00089 * 1 2 3 30 30 H 1.08996 * 109.47268 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46966 * 180.02562 * 3 2 1 32 32 H 1.08998 * 109.47060 * 299.99509 * 3 2 1 33 33 H 1.09004 * 109.47497 * 59.99748 * 3 2 1 34 34 H 1.08997 * 109.47389 * 180.02562 * 4 2 1 35 35 H 1.08996 * 109.47385 * 59.99672 * 4 2 1 36 36 H 1.09003 * 109.47040 * 60.00153 * 5 4 2 37 37 H 1.08996 * 109.46932 * 300.00158 * 5 4 2 38 38 H 0.97005 * 120.00412 * 0.02562 * 6 5 4 39 39 H 1.08986 * 109.47293 * 59.99986 * 9 7 6 40 40 H 1.09005 * 109.47046 * 299.99669 * 9 7 6 41 41 H 1.07999 * 119.96326 * 0.02562 * 11 10 9 42 42 H 1.07997 * 120.03156 * 180.02562 * 12 11 10 43 43 H 0.96997 * 119.99350 * 179.97438 * 18 17 15 44 44 H 1.07996 * 120.04097 * 179.72435 * 23 13 12 45 45 H 1.07997 * 119.96688 * 180.27743 * 24 23 13 46 46 H 0.96701 * 116.99510 * 180.02562 * 27 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.5300 0.0001 2.4985 6 7 2.0178 -0.6908 3.6947 7 6 1.6926 -0.2301 4.9188 8 8 0.9957 0.7563 5.0301 9 6 2.1949 -0.9405 6.1493 10 6 1.6925 -0.2301 7.3797 11 6 0.4838 -0.5967 7.9431 12 6 0.0209 0.0521 9.0709 13 6 0.7703 1.0740 9.6391 14 8 0.3183 1.7132 10.7480 15 6 -0.8069 1.2335 11.3152 16 1 -1.3508 0.4302 10.8406 17 6 -1.2659 1.7716 12.5079 18 7 -2.3635 1.3031 13.0616 19 14 -0.3249 3.1606 13.3292 20 1 -0.8338 4.4644 12.8330 21 1 -0.5125 3.0835 14.8003 22 1 1.1196 3.0380 13.0073 23 6 1.9806 1.4441 9.0673 24 6 2.4407 0.7876 7.9428 25 6 2.0323 -0.7104 -1.2303 26 8 2.7270 -1.6928 -1.1195 27 8 1.7080 -0.2519 -2.4496 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 3.1300 1.4425 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6766 1.9564 0.8900 34 1 3.1300 -0.7209 1.2495 35 1 1.6767 -1.7488 1.2493 36 1 0.4400 0.0001 2.4985 37 1 1.8933 1.0277 2.4984 38 1 2.5755 -1.4795 3.6057 39 1 3.2848 -0.9409 6.1491 40 1 1.8311 -1.9681 6.1495 41 1 -0.0983 -1.3918 7.5010 42 1 -0.9228 -0.2350 9.5106 43 1 -2.6843 1.6793 13.8961 44 1 2.5635 2.2414 9.5042 45 1 3.3840 1.0719 7.5003 46 1 2.0535 -0.7411 -3.2088 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001609674710.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:37:07 Heat of formation + Delta-G solvation = -169.944740 kcal Electronic energy + Delta-G solvation = -27559.044842 eV Core-core repulsion = 23412.929000 eV Total energy + Delta-G solvation = -4146.115842 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.67866 -41.09501 -40.41719 -38.46802 -37.90811 -37.06420 -35.23000 -34.50874 -33.00844 -31.79155 -30.22334 -28.37383 -28.23032 -26.79120 -25.92664 -23.87810 -23.67765 -22.38930 -21.34337 -20.26995 -19.79816 -19.09299 -18.89494 -17.85947 -17.76288 -16.90376 -16.79762 -16.74613 -16.44979 -16.06488 -15.76828 -15.60446 -15.27557 -15.22150 -14.84526 -14.68502 -14.35038 -14.34120 -14.23676 -14.06409 -13.97626 -13.46137 -13.03143 -12.93604 -12.76987 -12.59164 -12.57055 -12.48056 -12.41880 -12.34991 -12.27303 -12.01015 -11.91875 -11.89697 -11.35118 -11.26619 -10.95438 -10.79139 -9.99112 -9.77126 -8.96481 -8.49636 -6.22049 0.60255 0.63641 1.16334 1.30878 1.35831 1.51668 1.77294 1.95873 2.28504 2.37612 2.80127 3.08234 3.18805 3.57658 3.71470 3.78456 3.88147 4.05606 4.11061 4.17540 4.23533 4.27642 4.33566 4.50095 4.59286 4.60257 4.72789 4.73134 4.81365 4.83569 4.84261 4.94566 4.95732 5.00139 5.07225 5.27360 5.29642 5.31243 5.39185 5.53858 5.58231 5.58720 5.75770 5.81278 5.92553 6.26588 6.66168 6.84587 6.96396 7.39544 7.59625 8.62088 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.029144 B = 0.001723 C = 0.001707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 960.506662 B =16246.634489 C =16401.564939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.048 4.048 3 C -0.146 4.146 4 C -0.104 4.104 5 C 0.118 3.882 6 N -0.721 5.721 7 C 0.511 3.489 8 O -0.579 6.579 9 C -0.081 4.081 10 C -0.137 4.137 11 C -0.065 4.065 12 C -0.239 4.239 13 C 0.117 3.883 14 O -0.247 6.247 15 C -0.400 4.400 16 H 0.079 0.921 17 C 0.008 3.992 18 N -0.924 5.924 19 Si 0.972 3.028 20 H -0.267 1.267 21 H -0.265 1.265 22 H -0.262 1.262 23 C -0.194 4.194 24 C -0.059 4.059 25 C 0.494 3.506 26 O -0.547 6.547 27 O -0.509 6.509 28 H 0.079 0.921 29 H 0.078 0.922 30 H 0.062 0.938 31 H 0.064 0.936 32 H 0.078 0.922 33 H 0.079 0.921 34 H 0.083 0.917 35 H 0.080 0.920 36 H 0.064 0.936 37 H 0.067 0.933 38 H 0.417 0.583 39 H 0.134 0.866 40 H 0.126 0.874 41 H 0.133 0.867 42 H 0.106 0.894 43 H 0.285 0.715 44 H 0.128 0.872 45 H 0.154 0.846 46 H 0.427 0.573 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.124 -5.544 -31.305 34.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.050 4.050 3 C -0.203 4.203 4 C -0.142 4.142 5 C -0.006 4.006 6 N -0.375 5.375 7 C 0.298 3.702 8 O -0.458 6.458 9 C -0.120 4.120 10 C -0.138 4.138 11 C -0.083 4.083 12 C -0.258 4.258 13 C 0.068 3.932 14 O -0.155 6.155 15 C -0.476 4.476 16 H 0.097 0.903 17 C -0.190 4.190 18 N -0.564 5.564 19 Si 0.795 3.205 20 H -0.192 1.192 21 H -0.190 1.190 22 H -0.187 1.187 23 C -0.213 4.213 24 C -0.077 4.077 25 C 0.337 3.663 26 O -0.438 6.438 27 O -0.322 6.322 28 H 0.098 0.902 29 H 0.097 0.903 30 H 0.081 0.919 31 H 0.083 0.917 32 H 0.097 0.903 33 H 0.098 0.902 34 H 0.101 0.899 35 H 0.099 0.901 36 H 0.082 0.918 37 H 0.086 0.914 38 H 0.254 0.746 39 H 0.152 0.848 40 H 0.144 0.856 41 H 0.151 0.849 42 H 0.124 0.876 43 H 0.094 0.906 44 H 0.146 0.854 45 H 0.171 0.829 46 H 0.288 0.712 Dipole moment (debyes) X Y Z Total from point charges 12.598 -4.697 -30.609 33.432 hybrid contribution -0.088 -0.356 0.130 0.389 sum 12.511 -5.052 -30.479 33.332 Atomic orbital electron populations 1.21984 0.90665 1.03333 1.04439 1.20414 0.98611 0.97075 0.88850 1.21983 1.01786 0.92125 1.04455 1.21598 1.02201 0.99633 0.90725 1.21441 0.99379 0.96512 0.83259 1.45874 1.54183 1.32703 1.04717 1.21113 0.79479 0.84109 0.85457 1.90755 1.39319 1.28350 1.87366 1.20559 1.04183 1.00109 0.87162 1.19321 0.95879 1.00064 0.98508 1.20918 0.95523 0.98433 0.93474 1.21252 1.02088 1.01479 1.01019 1.19688 0.93957 0.92130 0.87394 1.83505 1.41313 1.52482 1.38150 1.20712 1.00031 1.20135 1.06710 0.90339 1.25301 0.96919 1.00892 0.95857 1.69734 1.22803 1.43607 1.20300 0.85193 0.79460 0.78293 0.77601 1.19234 1.18994 1.18677 1.20509 0.95120 1.05156 1.00524 1.20951 0.99859 0.93719 0.93194 1.23548 0.75798 0.81437 0.85490 1.90720 1.37514 1.27685 1.87834 1.84496 1.71848 1.58952 1.16900 0.90246 0.90307 0.91867 0.91692 0.90345 0.90179 0.89876 0.90101 0.91778 0.91429 0.74599 0.84770 0.85646 0.84944 0.87631 0.90582 0.85446 0.82872 0.71158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 8.05 71.98 0.58 -0.76 16 2 C -0.05 -0.48 0.74 -52.93 -0.04 -0.52 16 3 C -0.15 -1.26 8.05 71.98 0.58 -0.68 16 4 C -0.10 -1.08 3.67 30.60 0.11 -0.97 16 5 C 0.12 1.63 4.97 86.38 0.43 2.06 16 6 N -0.72 -10.21 5.56 -463.04 -2.57 -12.78 16 7 C 0.51 11.40 7.82 87.66 0.69 12.09 16 8 O -0.58 -19.62 16.03 -3.05 -0.05 -19.67 16 9 C -0.08 -1.49 5.83 29.10 0.17 -1.32 16 10 C -0.14 -4.16 4.38 -19.83 -0.09 -4.25 16 11 C -0.07 -2.39 9.69 22.25 0.22 -2.17 16 12 C -0.24 -11.18 9.17 22.39 0.21 -10.97 16 13 C 0.12 5.80 6.65 22.58 0.15 5.95 16 14 O -0.25 -14.04 8.59 -22.72 -0.20 -14.24 16 15 C -0.40 -24.47 9.95 67.92 0.68 -23.79 16 16 H 0.08 5.05 5.44 -2.91 -0.02 5.03 16 17 C 0.01 0.50 5.49 84.83 0.47 0.97 16 18 N -0.92 -56.48 13.96 21.61 0.30 -56.18 16 19 Si 0.97 46.79 28.62 68.60 1.96 48.75 16 20 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 21 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 22 H -0.26 -12.58 7.11 99.48 0.71 -11.88 16 23 C -0.19 -7.85 9.99 22.39 0.22 -7.63 16 24 C -0.06 -1.90 9.69 22.25 0.22 -1.69 16 25 C 0.49 6.13 6.92 71.23 0.49 6.63 16 26 O -0.55 -10.18 16.74 21.96 0.37 -9.82 16 27 O -0.51 -3.95 13.23 -51.49 -0.68 -4.63 16 28 H 0.08 0.77 6.43 -2.38 -0.02 0.75 16 29 H 0.08 0.63 8.11 -2.39 -0.02 0.61 16 30 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 31 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 32 H 0.08 0.59 8.11 -2.39 -0.02 0.57 16 33 H 0.08 0.72 6.43 -2.38 -0.02 0.70 16 34 H 0.08 0.86 8.10 -2.39 -0.02 0.84 16 35 H 0.08 0.87 8.10 -2.39 -0.02 0.85 16 36 H 0.06 1.03 6.43 -2.39 -0.02 1.02 16 37 H 0.07 1.04 6.43 -2.39 -0.02 1.03 16 38 H 0.42 3.09 8.47 -92.70 -0.79 2.30 16 39 H 0.13 1.52 8.08 -2.39 -0.02 1.50 16 40 H 0.13 1.65 8.08 -2.38 -0.02 1.63 16 41 H 0.13 4.06 8.06 -2.91 -0.02 4.03 16 42 H 0.11 5.41 5.64 -2.91 -0.02 5.39 16 43 H 0.28 15.92 8.31 -92.71 -0.77 15.15 16 44 H 0.13 4.76 8.06 -2.91 -0.02 4.74 16 45 H 0.15 3.61 8.06 -2.91 -0.02 3.59 16 46 H 0.43 0.03 9.10 -74.06 -0.67 -0.64 16 Total: -1.00 -83.96 386.84 3.78 -80.18 By element: Atomic # 1 Polarization: 15.88 SS G_CDS: -0.43 Total: 15.45 kcal Atomic # 6 Polarization: -32.13 SS G_CDS: 5.08 Total: -27.06 kcal Atomic # 7 Polarization: -66.69 SS G_CDS: -2.27 Total: -68.96 kcal Atomic # 8 Polarization: -47.80 SS G_CDS: -0.56 Total: -48.36 kcal Atomic # 14 Polarization: 46.79 SS G_CDS: 1.96 Total: 48.75 kcal Total: -83.96 3.78 -80.18 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609674710.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.768 kcal (2) G-P(sol) polarization free energy of solvation -83.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds