Wall clock time and date at job start Tue Mar 31 2020 18:52:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52991 * 109.47642 * 2 1 4 4 C 1.53002 * 109.46809 * 120.00414 * 2 1 3 5 5 N 1.46502 * 109.47501 * 64.99470 * 4 2 1 6 6 C 1.46494 * 119.99992 * 263.91435 * 5 4 2 7 7 C 1.53001 * 109.46956 * 270.00121 * 6 5 4 8 8 C 1.50699 * 109.47056 * 180.02562 * 7 6 5 9 9 O 1.20829 * 120.00138 * 359.97438 * 8 7 6 10 10 O 1.34230 * 120.00120 * 180.02562 * 8 7 6 11 11 C 1.34780 * 119.99681 * 83.91078 * 5 4 2 12 12 O 1.21593 * 120.00262 * 355.97917 * 11 5 4 13 13 C 1.47539 * 119.99428 * 175.97745 * 11 5 4 14 14 C 1.39660 * 120.19497 * 58.90462 * 13 11 5 15 15 C 1.37830 * 119.91529 * 179.97438 * 14 13 11 16 16 C 1.38562 * 120.32690 * 0.02562 * 15 14 13 17 17 C 1.38030 * 120.40256 * 359.97438 * 16 15 14 18 18 C 1.38833 * 120.06963 * 359.95514 * 17 16 15 19 19 O 1.35517 * 120.16414 * 180.02562 * 18 17 16 20 20 C 1.34817 * 116.99896 * 354.17737 * 19 18 17 21 21 H 1.08003 * 119.99997 * 5.13687 * 20 19 18 22 22 C 1.38696 * 120.00395 * 185.13475 * 20 19 18 23 23 N 1.31518 * 119.99685 * 0.02562 * 22 20 19 24 24 Si 1.86802 * 120.00366 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.46773 * 60.00131 * 24 22 20 26 26 H 1.48501 * 109.47047 * 180.02562 * 24 22 20 27 27 H 1.48495 * 109.47119 * 300.00489 * 24 22 20 28 28 H 1.09001 * 109.46627 * 300.00362 * 1 2 3 29 29 H 1.09008 * 109.46809 * 59.99523 * 1 2 3 30 30 H 1.08993 * 109.47592 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46627 * 239.99638 * 2 1 3 32 32 H 1.09001 * 109.47430 * 180.02562 * 3 2 1 33 33 H 1.09003 * 109.47089 * 299.99761 * 3 2 1 34 34 H 1.08994 * 109.47447 * 59.99710 * 3 2 1 35 35 H 1.08998 * 109.46979 * 304.99077 * 4 2 1 36 36 H 1.09003 * 109.46653 * 184.99399 * 4 2 1 37 37 H 1.09004 * 109.47045 * 29.99564 * 6 5 4 38 38 H 1.08993 * 109.47325 * 149.99806 * 6 5 4 39 39 H 1.09004 * 109.46789 * 299.99600 * 7 6 5 40 40 H 1.08999 * 109.47104 * 60.00056 * 7 6 5 41 41 H 0.96704 * 117.00378 * 179.97438 * 10 8 7 42 42 H 1.08007 * 120.04413 * 0.27127 * 14 13 11 43 43 H 1.08008 * 119.83668 * 179.97438 * 15 14 13 44 44 H 1.08006 * 119.80638 * 179.97438 * 16 15 14 45 45 H 1.08001 * 119.96955 * 179.97438 * 17 16 15 46 46 H 0.97009 * 120.00205 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7214 1.2492 5 7 1.6523 -2.1329 1.1906 6 6 0.4407 -2.5889 1.8763 7 6 0.7909 -3.0090 3.3052 8 6 -0.4554 -3.4786 4.0104 9 8 -1.5151 -3.4770 3.4298 10 8 -0.3885 -3.8978 5.2838 11 6 2.4104 -3.0120 0.5057 12 8 3.3748 -2.6221 -0.1238 13 6 2.0699 -4.4475 0.5198 14 6 0.8223 -4.8780 0.0630 15 6 0.5104 -6.2205 0.0783 16 6 1.4288 -7.1468 0.5456 17 6 2.6657 -6.7361 1.0002 18 6 2.9978 -5.3881 0.9908 19 8 4.2118 -4.9827 1.4362 20 6 5.0064 -5.9221 1.9874 21 1 4.7008 -6.9580 1.9834 22 6 6.2163 -5.5582 2.5596 23 7 6.5882 -4.2967 2.5649 24 14 7.3170 -6.8597 3.3240 25 1 7.6943 -7.8576 2.2911 26 1 8.5423 -6.2171 3.8633 27 1 6.5889 -7.5388 4.4258 28 1 -0.3632 0.5139 0.8900 29 1 -0.3633 0.5140 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 3.1301 1.4423 -0.0005 33 1 1.6769 1.9562 -0.8900 34 1 1.6769 1.9563 0.8899 35 1 1.6054 -0.2618 2.1369 36 1 3.1263 -0.6445 1.2951 37 1 -0.2878 -1.7785 1.9041 38 1 0.0182 -3.4390 1.3408 39 1 1.5194 -3.8194 3.2774 40 1 1.2133 -2.1588 3.8407 41 1 -1.2142 -4.1893 5.6941 42 1 0.1045 -4.1604 -0.3063 43 1 -0.4549 -6.5520 -0.2749 44 1 1.1755 -8.1967 0.5542 45 1 3.3761 -7.4641 1.3632 46 1 7.4343 -4.0421 2.9654 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001609698597.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:52:04 Heat of formation + Delta-G solvation = -132.406779 kcal Electronic energy + Delta-G solvation = -30345.871718 eV Core-core repulsion = 26201.383644 eV Total energy + Delta-G solvation = -4144.488074 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.42268 -39.80839 -38.54549 -36.48034 -36.33496 -36.03499 -34.45881 -32.39577 -30.89423 -30.59804 -29.02560 -27.19079 -26.38874 -25.41232 -24.78925 -22.57067 -21.65248 -21.06784 -20.32218 -18.95028 -18.15954 -18.10383 -17.14351 -16.60764 -16.47214 -15.87534 -15.65490 -15.10194 -14.87770 -14.60031 -14.36775 -14.05099 -13.76154 -13.66480 -13.48065 -13.26885 -13.03309 -12.94039 -12.66432 -12.48213 -12.24987 -12.14265 -11.77255 -11.63052 -11.56948 -11.41233 -11.25175 -11.16848 -10.97421 -10.90081 -10.84495 -10.72604 -10.57954 -10.52792 -10.48565 -9.66157 -9.05421 -8.92155 -8.41064 -8.18939 -7.37693 -6.51364 -4.11626 1.79531 2.22617 2.25263 2.88704 3.09160 3.10405 3.13286 3.41840 3.56050 3.89512 4.43088 4.84553 4.89147 4.99589 5.00677 5.04816 5.08867 5.17230 5.21068 5.40911 5.50513 5.52166 5.57307 5.64188 5.70490 5.75222 5.80164 5.85841 5.93347 5.97522 6.02877 6.09868 6.13529 6.19070 6.36758 6.42748 6.49036 6.52006 6.61761 6.90113 6.93815 7.01995 7.20621 7.25221 7.63478 7.78840 7.89064 7.91662 8.83172 8.91373 9.58417 10.64212 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.008938 B = 0.004643 C = 0.004027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3131.806467 B = 6029.609691 C = 6951.487470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.114 4.114 3 C -0.142 4.142 4 C 0.123 3.877 5 N -0.613 5.613 6 C 0.118 3.882 7 C -0.137 4.137 8 C 0.489 3.511 9 O -0.520 6.520 10 O -0.516 6.516 11 C 0.582 3.418 12 O -0.515 6.515 13 C -0.217 4.217 14 C -0.046 4.046 15 C -0.219 4.219 16 C -0.056 4.056 17 C -0.233 4.233 18 C 0.185 3.815 19 O -0.152 6.152 20 C -0.399 4.399 21 H 0.094 0.906 22 C 0.045 3.955 23 N -0.847 5.847 24 Si 0.941 3.059 25 H -0.269 1.269 26 H -0.277 1.277 27 H -0.269 1.269 28 H 0.051 0.949 29 H 0.051 0.949 30 H 0.057 0.943 31 H 0.078 0.922 32 H 0.057 0.943 33 H 0.053 0.947 34 H 0.052 0.948 35 H 0.072 0.928 36 H 0.083 0.917 37 H 0.085 0.915 38 H 0.100 0.900 39 H 0.117 0.883 40 H 0.107 0.893 41 H 0.407 0.593 42 H 0.116 0.884 43 H 0.111 0.889 44 H 0.111 0.889 45 H 0.132 0.868 46 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.278 4.253 2.042 14.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.134 4.134 3 C -0.200 4.200 4 C 0.001 3.999 5 N -0.347 5.347 6 C -0.006 4.006 7 C -0.176 4.176 8 C 0.331 3.669 9 O -0.409 6.409 10 O -0.327 6.327 11 C 0.372 3.628 12 O -0.389 6.389 13 C -0.222 4.222 14 C -0.064 4.064 15 C -0.238 4.238 16 C -0.075 4.075 17 C -0.252 4.252 18 C 0.128 3.872 19 O -0.053 6.053 20 C -0.475 4.475 21 H 0.111 0.889 22 C -0.162 4.162 23 N -0.479 5.479 24 Si 0.765 3.235 25 H -0.194 1.194 26 H -0.202 1.202 27 H -0.194 1.194 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.076 0.924 31 H 0.096 0.904 32 H 0.077 0.923 33 H 0.072 0.928 34 H 0.071 0.929 35 H 0.091 0.909 36 H 0.101 0.899 37 H 0.103 0.897 38 H 0.118 0.882 39 H 0.135 0.865 40 H 0.125 0.875 41 H 0.265 0.735 42 H 0.134 0.866 43 H 0.129 0.871 44 H 0.129 0.871 45 H 0.150 0.850 46 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -12.282 4.991 1.438 13.335 hybrid contribution -0.037 -1.026 0.777 1.287 sum -12.319 3.965 2.216 13.130 Atomic orbital electron populations 1.21886 0.95420 1.01804 1.01207 1.21506 0.95799 0.96247 0.99846 1.21746 1.01412 0.95495 1.01387 1.21489 1.01408 0.80010 0.97017 1.47817 1.26225 1.08091 1.52588 1.21545 0.86830 1.01973 0.90239 1.21894 0.94351 1.04732 0.96664 1.23417 0.90981 0.73007 0.79445 1.90701 1.31907 1.51797 1.66500 1.84590 1.42975 1.76658 1.28456 1.18176 0.81270 0.85436 0.77940 1.90775 1.27059 1.79596 1.41440 1.18724 0.95795 0.91688 1.15978 1.20669 0.93331 0.95826 0.96585 1.20493 1.00343 0.92923 1.10053 1.20889 0.92977 0.98513 0.95100 1.21138 0.98773 0.95562 1.09752 1.19164 0.85469 0.91285 0.91288 1.83998 1.19866 1.37140 1.64262 1.21346 1.00035 0.89003 1.37130 0.88900 1.25333 0.96838 0.97402 0.96618 1.70052 1.21867 1.15817 1.40173 0.85785 0.78966 0.79390 0.79339 1.19361 1.20172 1.19377 0.92990 0.93037 0.92399 0.90400 0.92345 0.92772 0.92863 0.90943 0.89896 0.89718 0.88233 0.86516 0.87528 0.73486 0.86572 0.87119 0.87140 0.85036 0.91768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.60 8.35 37.16 0.31 -1.29 16 2 C -0.11 -1.48 3.08 -90.62 -0.28 -1.76 16 3 C -0.14 -1.56 9.19 37.15 0.34 -1.22 16 4 C 0.12 1.79 4.75 -4.04 -0.02 1.78 16 5 N -0.61 -10.09 2.20 -174.91 -0.38 -10.47 16 6 C 0.12 1.63 3.54 -4.04 -0.01 1.62 16 7 C -0.14 -1.89 6.13 -27.88 -0.17 -2.06 16 8 C 0.49 6.38 8.33 36.01 0.30 6.67 16 9 O -0.52 -7.68 16.74 -18.75 -0.31 -7.99 16 10 O -0.52 -5.68 13.42 -39.26 -0.53 -6.20 16 11 C 0.58 12.38 6.68 -12.47 -0.08 12.30 16 12 O -0.51 -13.13 16.55 5.27 0.09 -13.04 16 13 C -0.22 -4.56 4.92 -104.81 -0.52 -5.08 16 14 C -0.05 -0.79 7.64 -39.20 -0.30 -1.09 16 15 C -0.22 -3.60 10.02 -39.61 -0.40 -4.00 16 16 C -0.06 -0.98 10.03 -39.54 -0.40 -1.37 16 17 C -0.23 -4.85 9.16 -39.44 -0.36 -5.21 16 18 C 0.19 4.40 6.66 -38.60 -0.26 4.14 16 19 O -0.15 -4.29 9.10 0.79 0.01 -4.28 16 20 C -0.40 -10.90 9.49 30.90 0.29 -10.61 16 21 H 0.09 2.31 5.21 -52.48 -0.27 2.04 16 22 C 0.04 1.20 5.49 -17.52 -0.10 1.11 16 23 N -0.85 -24.60 13.67 55.48 0.76 -23.84 16 24 Si 0.94 20.06 29.55 -169.99 -5.02 15.04 16 25 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 26 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 27 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 28 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.05 0.52 8.14 -51.92 -0.42 0.10 16 30 H 0.06 0.67 6.36 -51.93 -0.33 0.34 16 31 H 0.08 1.22 8.01 -51.93 -0.42 0.80 16 32 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 35 H 0.07 0.85 8.03 -51.93 -0.42 0.43 16 36 H 0.08 1.42 7.67 -51.93 -0.40 1.02 16 37 H 0.08 1.01 6.64 -51.93 -0.34 0.66 16 38 H 0.10 1.45 4.25 -51.93 -0.22 1.23 16 39 H 0.12 1.92 8.06 -51.93 -0.42 1.50 16 40 H 0.11 1.30 8.14 -51.93 -0.42 0.88 16 41 H 0.41 2.56 9.10 45.56 0.41 2.97 16 42 H 0.12 1.73 7.18 -52.48 -0.38 1.36 16 43 H 0.11 1.51 8.06 -52.48 -0.42 1.09 16 44 H 0.11 1.57 8.06 -52.48 -0.42 1.15 16 45 H 0.13 2.71 5.64 -52.49 -0.30 2.41 16 46 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 385.45 15.07 5.81 5.81 Total: -1.00 -34.42 385.45 -6.83 -41.25 By element: Atomic # 1 Polarization: 15.40 SS G_CDS: -5.59 Total: 9.80 kcal Atomic # 6 Polarization: -4.42 SS G_CDS: -1.65 Total: -6.06 kcal Atomic # 7 Polarization: -34.69 SS G_CDS: 0.37 Total: -34.31 kcal Atomic # 8 Polarization: -30.77 SS G_CDS: -0.75 Total: -31.52 kcal Atomic # 14 Polarization: 20.06 SS G_CDS: -5.02 Total: 15.04 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -34.42 -6.83 -41.25 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609698597.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.157 kcal (2) G-P(sol) polarization free energy of solvation -34.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.249 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds