Wall clock time and date at job start Tue Mar 31 2020 18:52:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52991 * 109.47642 * 2 1 4 4 C 1.53002 * 109.46809 * 120.00414 * 2 1 3 5 5 N 1.46502 * 109.47501 * 64.99470 * 4 2 1 6 6 C 1.46494 * 119.99992 * 263.91435 * 5 4 2 7 7 C 1.53001 * 109.46956 * 270.00121 * 6 5 4 8 8 C 1.50699 * 109.47056 * 180.02562 * 7 6 5 9 9 O 1.20829 * 120.00138 * 359.97438 * 8 7 6 10 10 O 1.34230 * 120.00120 * 180.02562 * 8 7 6 11 11 C 1.34780 * 119.99681 * 83.91078 * 5 4 2 12 12 O 1.21593 * 120.00262 * 355.97917 * 11 5 4 13 13 C 1.47539 * 119.99428 * 175.97745 * 11 5 4 14 14 C 1.39660 * 120.19497 * 58.90462 * 13 11 5 15 15 C 1.37830 * 119.91529 * 179.97438 * 14 13 11 16 16 C 1.38562 * 120.32690 * 0.02562 * 15 14 13 17 17 C 1.38030 * 120.40256 * 359.97438 * 16 15 14 18 18 C 1.38833 * 120.06963 * 359.95514 * 17 16 15 19 19 O 1.35517 * 120.16414 * 180.02562 * 18 17 16 20 20 C 1.34817 * 116.99896 * 354.17737 * 19 18 17 21 21 H 1.08003 * 119.99997 * 5.13687 * 20 19 18 22 22 C 1.38696 * 120.00395 * 185.13475 * 20 19 18 23 23 N 1.31518 * 119.99685 * 0.02562 * 22 20 19 24 24 Si 1.86802 * 120.00366 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.46773 * 60.00131 * 24 22 20 26 26 H 1.48501 * 109.47047 * 180.02562 * 24 22 20 27 27 H 1.48495 * 109.47119 * 300.00489 * 24 22 20 28 28 H 1.09001 * 109.46627 * 300.00362 * 1 2 3 29 29 H 1.09008 * 109.46809 * 59.99523 * 1 2 3 30 30 H 1.08993 * 109.47592 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46627 * 239.99638 * 2 1 3 32 32 H 1.09001 * 109.47430 * 180.02562 * 3 2 1 33 33 H 1.09003 * 109.47089 * 299.99761 * 3 2 1 34 34 H 1.08994 * 109.47447 * 59.99710 * 3 2 1 35 35 H 1.08998 * 109.46979 * 304.99077 * 4 2 1 36 36 H 1.09003 * 109.46653 * 184.99399 * 4 2 1 37 37 H 1.09004 * 109.47045 * 29.99564 * 6 5 4 38 38 H 1.08993 * 109.47325 * 149.99806 * 6 5 4 39 39 H 1.09004 * 109.46789 * 299.99600 * 7 6 5 40 40 H 1.08999 * 109.47104 * 60.00056 * 7 6 5 41 41 H 0.96704 * 117.00378 * 179.97438 * 10 8 7 42 42 H 1.08007 * 120.04413 * 0.27127 * 14 13 11 43 43 H 1.08008 * 119.83668 * 179.97438 * 15 14 13 44 44 H 1.08006 * 119.80638 * 179.97438 * 16 15 14 45 45 H 1.08001 * 119.96955 * 179.97438 * 17 16 15 46 46 H 0.97009 * 120.00205 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7214 1.2492 5 7 1.6523 -2.1329 1.1906 6 6 0.4407 -2.5889 1.8763 7 6 0.7909 -3.0090 3.3052 8 6 -0.4554 -3.4786 4.0104 9 8 -1.5151 -3.4770 3.4298 10 8 -0.3885 -3.8978 5.2838 11 6 2.4104 -3.0120 0.5057 12 8 3.3748 -2.6221 -0.1238 13 6 2.0699 -4.4475 0.5198 14 6 0.8223 -4.8780 0.0630 15 6 0.5104 -6.2205 0.0783 16 6 1.4288 -7.1468 0.5456 17 6 2.6657 -6.7361 1.0002 18 6 2.9978 -5.3881 0.9908 19 8 4.2118 -4.9827 1.4362 20 6 5.0064 -5.9221 1.9874 21 1 4.7008 -6.9580 1.9834 22 6 6.2163 -5.5582 2.5596 23 7 6.5882 -4.2967 2.5649 24 14 7.3170 -6.8597 3.3240 25 1 7.6943 -7.8576 2.2911 26 1 8.5423 -6.2171 3.8633 27 1 6.5889 -7.5388 4.4258 28 1 -0.3632 0.5139 0.8900 29 1 -0.3633 0.5140 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 3.1301 1.4423 -0.0005 33 1 1.6769 1.9562 -0.8900 34 1 1.6769 1.9563 0.8899 35 1 1.6054 -0.2618 2.1369 36 1 3.1263 -0.6445 1.2951 37 1 -0.2878 -1.7785 1.9041 38 1 0.0182 -3.4390 1.3408 39 1 1.5194 -3.8194 3.2774 40 1 1.2133 -2.1588 3.8407 41 1 -1.2142 -4.1893 5.6941 42 1 0.1045 -4.1604 -0.3063 43 1 -0.4549 -6.5520 -0.2749 44 1 1.1755 -8.1967 0.5542 45 1 3.3761 -7.4641 1.3632 46 1 7.4343 -4.0421 2.9654 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001609698597.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:52:03 Heat of formation + Delta-G solvation = -155.429395 kcal Electronic energy + Delta-G solvation = -30346.870053 eV Core-core repulsion = 26201.383644 eV Total energy + Delta-G solvation = -4145.486410 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.75046 -41.09664 -40.15546 -38.11632 -37.71082 -37.10680 -35.65255 -34.33809 -32.19907 -32.04561 -30.64735 -28.10929 -27.72494 -27.22179 -26.08126 -24.00247 -23.26127 -22.20228 -21.47685 -20.37937 -19.92131 -19.26078 -18.61652 -18.02137 -17.80096 -17.11846 -16.90763 -16.59606 -16.45511 -16.03059 -15.70304 -15.58513 -15.40138 -15.15056 -14.69360 -14.53945 -14.47339 -14.21331 -14.04790 -13.78899 -13.56970 -13.37867 -13.07416 -13.01260 -12.73389 -12.63241 -12.59840 -12.50047 -12.44861 -12.29137 -12.16634 -12.02603 -11.83383 -11.65576 -11.59120 -11.45865 -10.82685 -10.71346 -9.89952 -9.63201 -9.07063 -8.47384 -6.17295 0.24658 0.68008 1.17936 1.33591 1.45061 1.50270 1.61787 1.93394 2.15440 2.35767 2.79610 3.13254 3.38768 3.63303 3.73198 3.85415 3.97598 4.00715 4.08566 4.18400 4.24378 4.35644 4.44243 4.47974 4.53527 4.57491 4.63697 4.70319 4.79778 4.85033 4.91656 4.93398 5.01723 5.04370 5.07638 5.11595 5.24963 5.36091 5.44874 5.48970 5.56413 5.59900 5.67024 5.67997 5.95395 6.12404 6.34153 6.94638 7.00384 7.24074 7.74387 8.73926 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.008938 B = 0.004643 C = 0.004027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3131.806467 B = 6029.609691 C = 6951.487470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.109 4.109 3 C -0.139 4.139 4 C 0.118 3.882 5 N -0.600 5.600 6 C 0.119 3.881 7 C -0.137 4.137 8 C 0.501 3.499 9 O -0.534 6.534 10 O -0.515 6.515 11 C 0.574 3.426 12 O -0.575 6.575 13 C -0.226 4.226 14 C -0.044 4.044 15 C -0.192 4.192 16 C -0.048 4.048 17 C -0.246 4.246 18 C 0.148 3.852 19 O -0.211 6.211 20 C -0.419 4.419 21 H 0.106 0.894 22 C -0.019 4.019 23 N -0.912 5.912 24 Si 1.018 2.982 25 H -0.258 1.258 26 H -0.274 1.274 27 H -0.252 1.252 28 H 0.073 0.927 29 H 0.062 0.938 30 H 0.051 0.949 31 H 0.041 0.959 32 H 0.040 0.960 33 H 0.067 0.933 34 H 0.075 0.925 35 H 0.109 0.891 36 H 0.044 0.956 37 H 0.116 0.884 38 H 0.097 0.903 39 H 0.083 0.917 40 H 0.120 0.880 41 H 0.429 0.571 42 H 0.148 0.852 43 H 0.159 0.841 44 H 0.153 0.847 45 H 0.126 0.874 46 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.387 3.162 2.539 17.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.129 4.129 3 C -0.196 4.196 4 C -0.004 4.004 5 N -0.332 5.332 6 C -0.004 4.004 7 C -0.176 4.176 8 C 0.344 3.656 9 O -0.425 6.425 10 O -0.329 6.329 11 C 0.364 3.636 12 O -0.454 6.454 13 C -0.230 4.230 14 C -0.062 4.062 15 C -0.210 4.210 16 C -0.066 4.066 17 C -0.265 4.265 18 C 0.095 3.905 19 O -0.116 6.116 20 C -0.495 4.495 21 H 0.124 0.876 22 C -0.218 4.218 23 N -0.549 5.549 24 Si 0.837 3.163 25 H -0.182 1.182 26 H -0.199 1.199 27 H -0.176 1.176 28 H 0.092 0.908 29 H 0.081 0.919 30 H 0.070 0.930 31 H 0.059 0.941 32 H 0.059 0.941 33 H 0.086 0.914 34 H 0.094 0.906 35 H 0.127 0.873 36 H 0.063 0.937 37 H 0.134 0.866 38 H 0.115 0.885 39 H 0.102 0.898 40 H 0.138 0.862 41 H 0.291 0.709 42 H 0.165 0.835 43 H 0.176 0.824 44 H 0.171 0.829 45 H 0.144 0.856 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -16.506 3.876 1.959 17.068 hybrid contribution 0.847 -0.711 0.531 1.226 sum -15.660 3.165 2.489 16.169 Atomic orbital electron populations 1.21845 0.93003 1.01941 1.02917 1.21424 0.97680 0.96736 0.97071 1.21722 1.00382 0.94372 1.03151 1.21684 0.99613 0.79356 0.99709 1.47798 1.26123 1.08292 1.50986 1.21725 0.85831 1.02974 0.89841 1.21778 0.94413 1.04234 0.97160 1.22981 0.90038 0.72694 0.79877 1.90697 1.32174 1.52584 1.67019 1.84537 1.44731 1.76173 1.27450 1.18454 0.80948 0.86340 0.77838 1.90735 1.29700 1.80557 1.44431 1.19053 0.96818 0.91392 1.15741 1.21089 0.92205 0.97460 0.95446 1.21114 1.01571 0.91900 1.06399 1.21363 0.91190 1.01012 0.93035 1.21289 1.00507 0.94205 1.10535 1.19794 0.85185 0.93317 0.92208 1.83987 1.22086 1.38223 1.67291 1.21862 1.00600 0.89699 1.37304 0.87645 1.26634 0.98275 0.99812 0.97039 1.70230 1.22810 1.18574 1.43288 0.84665 0.76604 0.76290 0.78754 1.18247 1.19879 1.17604 0.90767 0.91864 0.92984 0.94070 0.94080 0.91413 0.90605 0.87252 0.93735 0.86602 0.88487 0.89817 0.86175 0.70863 0.83463 0.82374 0.82924 0.85636 0.91938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.70 8.35 71.98 0.60 -2.10 16 2 C -0.11 -2.82 3.08 -10.79 -0.03 -2.86 16 3 C -0.14 -2.94 9.19 71.98 0.66 -2.28 16 4 C 0.12 3.52 4.75 86.38 0.41 3.93 16 5 N -0.60 -20.14 2.20 -825.56 -1.82 -21.96 16 6 C 0.12 3.10 3.54 86.38 0.31 3.41 16 7 C -0.14 -3.65 6.13 29.85 0.18 -3.47 16 8 C 0.50 11.93 8.33 71.24 0.59 12.52 16 9 O -0.53 -14.08 16.74 21.95 0.37 -13.71 16 10 O -0.51 -10.13 13.42 -51.41 -0.69 -10.82 16 11 C 0.57 25.82 6.68 86.70 0.58 26.40 16 12 O -0.58 -32.02 16.55 -4.00 -0.07 -32.09 16 13 C -0.23 -9.70 4.92 -19.99 -0.10 -9.80 16 14 C -0.04 -1.42 7.64 22.52 0.17 -1.25 16 15 C -0.19 -5.41 10.02 22.25 0.22 -5.19 16 16 C -0.05 -1.50 10.03 22.30 0.22 -1.28 16 17 C -0.25 -10.26 9.16 22.36 0.20 -10.06 16 18 C 0.15 7.38 6.66 22.91 0.15 7.53 16 19 O -0.21 -12.89 9.10 -20.04 -0.18 -13.07 16 20 C -0.42 -24.38 9.49 67.93 0.64 -23.73 16 21 H 0.11 5.52 5.21 -2.91 -0.02 5.50 16 22 C -0.02 -1.08 5.49 84.85 0.47 -0.62 16 23 N -0.91 -57.29 13.67 21.62 0.30 -57.00 16 24 Si 1.02 42.90 29.55 68.60 2.03 44.93 16 25 H -0.26 -10.27 7.11 99.48 0.71 -9.56 16 26 H -0.27 -11.22 7.11 99.48 0.71 -10.52 16 27 H -0.25 -9.77 7.11 99.48 0.71 -9.06 16 28 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 29 H 0.06 1.09 8.14 -2.38 -0.02 1.07 16 30 H 0.05 1.06 6.36 -2.39 -0.02 1.04 16 31 H 0.04 1.36 8.01 -2.39 -0.02 1.34 16 32 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 34 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 35 H 0.11 2.40 8.03 -2.39 -0.02 2.39 16 36 H 0.04 1.67 7.67 -2.39 -0.02 1.65 16 37 H 0.12 2.36 6.64 -2.38 -0.02 2.35 16 38 H 0.10 2.60 4.25 -2.39 -0.01 2.59 16 39 H 0.08 2.86 8.06 -2.38 -0.02 2.84 16 40 H 0.12 2.82 8.14 -2.39 -0.02 2.80 16 41 H 0.43 4.11 9.10 -74.05 -0.67 3.43 16 42 H 0.15 3.86 7.18 -2.91 -0.02 3.84 16 43 H 0.16 3.15 8.06 -2.91 -0.02 3.13 16 44 H 0.15 3.54 8.06 -2.91 -0.02 3.51 16 45 H 0.13 5.28 5.64 -2.91 -0.02 5.26 16 46 H 0.27 15.71 8.31 -92.70 -0.77 14.94 16 Total: -1.00 -84.99 385.45 5.57 -79.42 By element: Atomic # 1 Polarization: 32.79 SS G_CDS: 0.34 Total: 33.13 kcal Atomic # 6 Polarization: -14.12 SS G_CDS: 5.29 Total: -8.83 kcal Atomic # 7 Polarization: -77.44 SS G_CDS: -1.52 Total: -78.96 kcal Atomic # 8 Polarization: -69.12 SS G_CDS: -0.57 Total: -69.70 kcal Atomic # 14 Polarization: 42.90 SS G_CDS: 2.03 Total: 44.93 kcal Total: -84.99 5.57 -79.42 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609698597.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.010 kcal (2) G-P(sol) polarization free energy of solvation -84.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds