Wall clock time and date at job start Tue Mar 31 2020 19:21:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 109.46699 * 2 1 4 4 H 1.08995 * 109.47321 * 305.00167 * 3 2 1 5 5 C 1.53000 * 109.46958 * 65.00503 * 3 2 1 6 6 C 1.53007 * 109.47076 * 185.00340 * 3 2 1 7 7 H 1.08993 * 109.47086 * 60.00342 * 6 3 2 8 8 N 1.46503 * 109.46672 * 180.02562 * 6 3 2 9 9 C 1.34783 * 119.99585 * 204.99678 * 8 6 3 10 10 O 1.21284 * 119.99976 * 0.02562 * 9 8 6 11 11 C 1.50699 * 120.00059 * 179.97438 * 9 8 6 12 12 C 1.50699 * 109.47151 * 180.02562 * 11 9 8 13 13 C 1.38328 * 119.96224 * 270.02423 * 12 11 9 14 14 C 1.38279 * 120.13490 * 179.97438 * 13 12 11 15 15 C 1.38120 * 120.06774 * 359.77134 * 14 13 12 16 16 C 1.38852 * 119.93464 * 0.50144 * 15 14 13 17 17 O 1.35752 * 120.07221 * 179.74702 * 16 15 14 18 18 C 1.34829 * 116.99954 * 354.17311 * 17 16 15 19 19 H 1.07998 * 119.99999 * 5.03596 * 18 17 16 20 20 C 1.38656 * 119.99670 * 185.03445 * 18 17 16 21 21 N 1.31550 * 120.00275 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 119.99668 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47010 * 0.02562 * 22 20 18 24 24 H 1.48501 * 109.46908 * 119.99967 * 22 20 18 25 25 H 1.48504 * 109.47373 * 240.00300 * 22 20 18 26 26 C 1.38073 * 119.96539 * 89.99818 * 12 11 9 27 27 C 1.50703 * 109.47024 * 299.99794 * 6 3 2 28 28 O 1.20821 * 120.00397 * 240.00310 * 27 6 3 29 29 O 1.34232 * 119.99605 * 59.99954 * 27 6 3 30 30 H 1.09001 * 109.47304 * 299.99377 * 1 2 3 31 31 H 1.08993 * 109.47862 * 59.99999 * 1 2 3 32 32 H 1.09008 * 109.46798 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.47304 * 240.00623 * 2 1 3 34 34 H 1.08993 * 109.47862 * 120.00001 * 2 1 3 35 35 H 1.09002 * 109.47401 * 180.02562 * 5 3 2 36 36 H 1.09005 * 109.47031 * 299.99462 * 5 3 2 37 37 H 1.08995 * 109.47379 * 59.99699 * 5 3 2 38 38 H 0.97001 * 120.00603 * 25.00108 * 8 6 3 39 39 H 1.09004 * 109.46756 * 60.00007 * 11 9 8 40 40 H 1.08998 * 109.46908 * 300.00650 * 11 9 8 41 41 H 1.08001 * 119.93314 * 359.97438 * 13 12 11 42 42 H 1.07999 * 119.96467 * 180.02562 * 14 13 12 43 43 H 1.08006 * 120.03757 * 180.27571 * 15 14 13 44 44 H 0.96999 * 119.99936 * 179.97438 * 21 20 18 45 45 H 1.07996 * 120.03547 * 0.04988 * 26 12 11 46 46 H 0.96698 * 116.99955 * 179.97438 * 29 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6052 1.9816 -0.8417 5 6 1.6351 2.1265 1.3074 6 6 3.5647 1.4445 -0.1258 7 1 3.8531 0.9573 -1.0572 8 7 4.0529 2.8258 -0.1252 9 6 5.2306 3.1245 -0.7087 10 8 5.8859 2.2499 -1.2347 11 6 5.7326 4.5454 -0.7086 12 6 7.0599 4.6093 -1.4195 13 6 8.2337 4.4383 -0.7078 14 6 9.4535 4.4957 -1.3565 15 6 9.5031 4.7194 -2.7186 16 6 8.3269 4.8971 -3.4348 17 8 8.3726 5.1222 -4.7728 18 6 9.5920 5.2819 -5.3253 19 1 10.4791 5.1477 -4.7240 20 6 9.7072 5.6182 -6.6655 21 7 8.6267 5.7821 -7.3978 22 14 11.3967 5.8401 -7.4309 23 1 12.4412 5.6021 -6.4024 24 1 11.5676 4.8707 -8.5427 25 1 11.5246 7.2233 -7.9560 26 6 7.1030 4.8379 -2.7805 27 6 4.1657 0.6993 1.0381 28 8 4.9240 1.2639 1.7903 29 8 3.8585 -0.5919 1.2389 30 1 -0.3634 0.5137 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0278 0.0005 33 1 1.8933 -0.5137 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 1.9980 3.1544 1.3073 36 1 0.5488 2.1252 1.3970 37 1 2.0698 1.5875 2.1492 38 1 3.5287 3.5254 0.2952 39 1 5.8536 4.8879 0.3191 40 1 5.0145 5.1845 -1.2224 41 1 8.1973 4.2596 0.3567 42 1 10.3682 4.3614 -0.7983 43 1 10.4559 4.7597 -3.2255 44 1 8.7073 6.0177 -8.3353 45 1 6.1863 4.9717 -3.3354 46 1 4.2689 -1.0278 1.9983 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001609901867.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:21:16 Heat of formation + Delta-G solvation = -140.138594 kcal Electronic energy + Delta-G solvation = -28600.395100 eV Core-core repulsion = 24455.571750 eV Total energy + Delta-G solvation = -4144.823351 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.10287 -39.56891 -38.71283 -37.32230 -36.48082 -36.25439 -34.01808 -32.36597 -31.98065 -30.29078 -29.14652 -28.30801 -26.74036 -25.18453 -24.39591 -22.70859 -21.59457 -21.07713 -20.34921 -20.13724 -18.24730 -17.78383 -17.42320 -16.90993 -16.76419 -16.16392 -15.89500 -15.23373 -15.01384 -14.84879 -14.42211 -14.35282 -14.24172 -13.90650 -13.74252 -13.47772 -13.37221 -13.27536 -12.61890 -12.48930 -12.37640 -12.31508 -12.16905 -11.84795 -11.77914 -11.49120 -11.32864 -11.22324 -11.10597 -10.87965 -10.81413 -10.78482 -10.70751 -10.54963 -10.38556 -9.83644 -9.39659 -9.27053 -8.78219 -8.00114 -7.14642 -6.38585 -3.97266 2.00115 2.11710 2.42603 2.47408 2.87343 3.15906 3.17713 3.22480 3.23370 4.01880 4.11473 4.40197 4.44803 4.58818 4.83394 4.88186 4.93820 5.04575 5.05904 5.16553 5.18667 5.22904 5.25175 5.35230 5.47889 5.53828 5.55874 5.58864 5.73199 5.73917 5.81352 5.92961 6.01820 6.04651 6.13470 6.24763 6.26266 6.40736 6.72472 6.98797 7.14468 7.31427 7.33811 7.44599 7.50704 7.66903 7.89909 8.06986 8.22831 9.07553 9.79033 10.79949 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.019200 B = 0.002285 C = 0.002170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1457.994627 B =12251.020451 C =12899.780689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.127 4.127 3 C -0.094 4.094 4 H 0.096 0.904 5 C -0.156 4.156 6 C 0.160 3.840 7 H 0.127 0.873 8 N -0.720 5.720 9 C 0.521 3.479 10 O -0.513 6.513 11 C -0.091 4.091 12 C -0.034 4.034 13 C -0.194 4.194 14 C -0.075 4.075 15 C -0.230 4.230 16 C 0.154 3.846 17 O -0.181 6.181 18 C -0.389 4.389 19 H 0.092 0.908 20 C 0.038 3.962 21 N -0.865 5.865 22 Si 0.940 3.060 23 H -0.267 1.267 24 H -0.276 1.276 25 H -0.276 1.276 26 C -0.174 4.174 27 C 0.469 3.531 28 O -0.504 6.504 29 O -0.511 6.511 30 H 0.055 0.945 31 H 0.054 0.946 32 H 0.056 0.944 33 H 0.069 0.931 34 H 0.085 0.915 35 H 0.058 0.942 36 H 0.070 0.930 37 H 0.055 0.945 38 H 0.405 0.595 39 H 0.101 0.899 40 H 0.102 0.898 41 H 0.103 0.897 42 H 0.107 0.893 43 H 0.126 0.874 44 H 0.268 0.732 45 H 0.114 0.886 46 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.228 -8.224 18.071 25.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.164 4.164 3 C -0.113 4.113 4 H 0.114 0.886 5 C -0.213 4.213 6 C 0.053 3.947 7 H 0.145 0.855 8 N -0.376 5.376 9 C 0.309 3.691 10 O -0.386 6.386 11 C -0.131 4.131 12 C -0.035 4.035 13 C -0.213 4.213 14 C -0.094 4.094 15 C -0.249 4.249 16 C 0.101 3.899 17 O -0.084 6.084 18 C -0.466 4.466 19 H 0.109 0.891 20 C -0.166 4.166 21 N -0.501 5.501 22 Si 0.765 3.235 23 H -0.191 1.191 24 H -0.202 1.202 25 H -0.202 1.202 26 C -0.193 4.193 27 C 0.309 3.691 28 O -0.390 6.390 29 O -0.323 6.323 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.075 0.925 33 H 0.088 0.912 34 H 0.104 0.896 35 H 0.077 0.923 36 H 0.089 0.911 37 H 0.074 0.926 38 H 0.241 0.759 39 H 0.119 0.881 40 H 0.120 0.880 41 H 0.121 0.879 42 H 0.125 0.875 43 H 0.144 0.856 44 H 0.078 0.922 45 H 0.132 0.868 46 H 0.263 0.737 Dipole moment (debyes) X Y Z Total from point charges -15.910 -8.420 17.124 24.844 hybrid contribution 1.049 0.084 0.413 1.131 sum -14.861 -8.336 17.537 24.452 Atomic orbital electron populations 1.21808 0.95439 1.01844 1.01846 1.21739 0.95970 0.94490 1.04236 1.21438 0.90687 0.98949 1.00195 0.88555 1.21989 1.02543 1.00419 0.96394 1.20499 0.94285 0.83718 0.96240 0.85541 1.45864 1.23466 1.07793 1.60438 1.20888 0.79707 0.91748 0.76792 1.90765 1.55299 1.49414 1.43134 1.20568 0.96749 0.93029 1.02747 1.18641 0.92452 0.99637 0.92772 1.20379 0.92169 1.10152 0.98615 1.20681 0.96751 0.97934 0.93991 1.21180 0.98703 1.10472 0.94552 1.19269 0.93123 0.92551 0.84970 1.83975 1.31969 1.77525 1.14969 1.21364 0.82455 1.48706 0.94049 0.89099 1.25268 0.99379 0.96550 0.95391 1.70048 1.27991 1.44398 1.07627 0.85658 0.80352 0.78242 0.79229 1.19138 1.20206 1.20195 1.19937 0.95986 1.10349 0.93023 1.24084 0.78615 0.80286 0.86154 1.90723 1.33560 1.68687 1.46070 1.84626 1.68686 1.26271 1.52732 0.92594 0.92674 0.92536 0.91199 0.89628 0.92275 0.91059 0.92636 0.75872 0.88108 0.87996 0.87897 0.87488 0.85618 0.92189 0.86784 0.73654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.77 9.67 37.16 0.36 -0.41 16 2 C -0.13 -0.78 4.69 -26.73 -0.13 -0.90 16 3 C -0.09 -0.61 2.38 -90.61 -0.22 -0.82 16 4 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 5 C -0.16 -0.88 8.53 37.16 0.32 -0.56 16 6 C 0.16 1.59 2.35 -69.08 -0.16 1.43 16 7 H 0.13 1.43 7.58 -51.93 -0.39 1.04 16 8 N -0.72 -7.64 4.53 -54.93 -0.25 -7.89 16 9 C 0.52 7.80 7.65 -10.98 -0.08 7.71 16 10 O -0.51 -10.19 15.70 5.55 0.09 -10.10 16 11 C -0.09 -1.26 5.83 -29.04 -0.17 -1.43 16 12 C -0.03 -0.65 4.37 -104.65 -0.46 -1.11 16 13 C -0.19 -3.70 9.70 -39.53 -0.38 -4.09 16 14 C -0.08 -1.51 10.04 -39.61 -0.40 -1.91 16 15 C -0.23 -5.33 9.17 -39.40 -0.36 -5.69 16 16 C 0.15 3.93 6.65 -39.11 -0.26 3.67 16 17 O -0.18 -5.34 9.76 0.05 0.00 -5.34 16 18 C -0.39 -11.23 9.49 30.89 0.29 -10.94 16 19 H 0.09 2.44 5.21 -52.49 -0.27 2.17 16 20 C 0.04 1.07 5.49 -17.52 -0.10 0.97 16 21 N -0.87 -25.92 13.67 55.48 0.76 -25.16 16 22 Si 0.94 21.08 29.55 -169.99 -5.02 16.06 16 23 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 24 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 25 H -0.28 -6.04 7.11 56.52 0.40 -5.63 16 26 C -0.17 -3.87 9.65 -39.39 -0.38 -4.25 16 27 C 0.47 5.19 6.33 36.01 0.23 5.41 16 28 O -0.50 -7.32 17.08 -18.75 -0.32 -7.64 16 29 O -0.51 -4.00 10.43 -39.26 -0.41 -4.41 16 30 H 0.06 0.26 6.57 -51.93 -0.34 -0.09 16 31 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.06 0.27 8.14 -51.92 -0.42 -0.15 16 33 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.09 0.55 5.68 -51.93 -0.29 0.26 16 35 H 0.06 0.30 6.51 -51.93 -0.34 -0.04 16 36 H 0.07 0.32 6.57 -51.93 -0.34 -0.02 16 37 H 0.05 0.37 7.22 -51.93 -0.37 -0.01 16 38 H 0.40 3.02 6.87 -40.82 -0.28 2.74 16 39 H 0.10 1.13 8.09 -51.93 -0.42 0.71 16 40 H 0.10 1.14 8.08 -51.93 -0.42 0.72 16 41 H 0.10 1.72 8.06 -52.49 -0.42 1.30 16 42 H 0.11 1.82 8.06 -52.49 -0.42 1.40 16 43 H 0.13 2.90 5.64 -52.48 -0.30 2.60 16 44 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 45 H 0.11 2.43 8.06 -52.49 -0.42 2.01 16 46 H 0.40 1.70 9.10 45.56 0.41 2.12 16 LS Contribution 382.14 15.07 5.76 5.76 Total: -1.00 -37.78 382.14 -6.74 -44.52 By element: Atomic # 1 Polarization: 12.58 SS G_CDS: -5.45 Total: 7.13 kcal Atomic # 6 Polarization: -11.03 SS G_CDS: -1.89 Total: -12.92 kcal Atomic # 7 Polarization: -33.56 SS G_CDS: 0.51 Total: -33.05 kcal Atomic # 8 Polarization: -26.85 SS G_CDS: -0.64 Total: -27.49 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -37.78 -6.74 -44.52 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609901867.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.618 kcal (2) G-P(sol) polarization free energy of solvation -37.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds