Wall clock time and date at job start Tue Mar 31 2020 19:21:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 109.46699 * 2 1 4 4 H 1.08995 * 109.47321 * 305.00167 * 3 2 1 5 5 C 1.53000 * 109.46958 * 65.00503 * 3 2 1 6 6 C 1.53007 * 109.47076 * 185.00340 * 3 2 1 7 7 H 1.08993 * 109.47086 * 60.00342 * 6 3 2 8 8 N 1.46503 * 109.46672 * 180.02562 * 6 3 2 9 9 C 1.34783 * 119.99585 * 204.99678 * 8 6 3 10 10 O 1.21284 * 119.99976 * 0.02562 * 9 8 6 11 11 C 1.50699 * 120.00059 * 179.97438 * 9 8 6 12 12 C 1.50699 * 109.47151 * 180.02562 * 11 9 8 13 13 C 1.38328 * 119.96224 * 270.02423 * 12 11 9 14 14 C 1.38279 * 120.13490 * 179.97438 * 13 12 11 15 15 C 1.38120 * 120.06774 * 359.77134 * 14 13 12 16 16 C 1.38852 * 119.93464 * 0.50144 * 15 14 13 17 17 O 1.35752 * 120.07221 * 179.74702 * 16 15 14 18 18 C 1.34829 * 116.99954 * 354.17311 * 17 16 15 19 19 H 1.07998 * 119.99999 * 5.03596 * 18 17 16 20 20 C 1.38656 * 119.99670 * 185.03445 * 18 17 16 21 21 N 1.31550 * 120.00275 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 119.99668 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47010 * 0.02562 * 22 20 18 24 24 H 1.48501 * 109.46908 * 119.99967 * 22 20 18 25 25 H 1.48504 * 109.47373 * 240.00300 * 22 20 18 26 26 C 1.38073 * 119.96539 * 89.99818 * 12 11 9 27 27 C 1.50703 * 109.47024 * 299.99794 * 6 3 2 28 28 O 1.20821 * 120.00397 * 240.00310 * 27 6 3 29 29 O 1.34232 * 119.99605 * 59.99954 * 27 6 3 30 30 H 1.09001 * 109.47304 * 299.99377 * 1 2 3 31 31 H 1.08993 * 109.47862 * 59.99999 * 1 2 3 32 32 H 1.09008 * 109.46798 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.47304 * 240.00623 * 2 1 3 34 34 H 1.08993 * 109.47862 * 120.00001 * 2 1 3 35 35 H 1.09002 * 109.47401 * 180.02562 * 5 3 2 36 36 H 1.09005 * 109.47031 * 299.99462 * 5 3 2 37 37 H 1.08995 * 109.47379 * 59.99699 * 5 3 2 38 38 H 0.97001 * 120.00603 * 25.00108 * 8 6 3 39 39 H 1.09004 * 109.46756 * 60.00007 * 11 9 8 40 40 H 1.08998 * 109.46908 * 300.00650 * 11 9 8 41 41 H 1.08001 * 119.93314 * 359.97438 * 13 12 11 42 42 H 1.07999 * 119.96467 * 180.02562 * 14 13 12 43 43 H 1.08006 * 120.03757 * 180.27571 * 15 14 13 44 44 H 0.96999 * 119.99936 * 179.97438 * 21 20 18 45 45 H 1.07996 * 120.03547 * 0.04988 * 26 12 11 46 46 H 0.96698 * 116.99955 * 179.97438 * 29 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6052 1.9816 -0.8417 5 6 1.6351 2.1265 1.3074 6 6 3.5647 1.4445 -0.1258 7 1 3.8531 0.9573 -1.0572 8 7 4.0529 2.8258 -0.1252 9 6 5.2306 3.1245 -0.7087 10 8 5.8859 2.2499 -1.2347 11 6 5.7326 4.5454 -0.7086 12 6 7.0599 4.6093 -1.4195 13 6 8.2337 4.4383 -0.7078 14 6 9.4535 4.4957 -1.3565 15 6 9.5031 4.7194 -2.7186 16 6 8.3269 4.8971 -3.4348 17 8 8.3726 5.1222 -4.7728 18 6 9.5920 5.2819 -5.3253 19 1 10.4791 5.1477 -4.7240 20 6 9.7072 5.6182 -6.6655 21 7 8.6267 5.7821 -7.3978 22 14 11.3967 5.8401 -7.4309 23 1 12.4412 5.6021 -6.4024 24 1 11.5676 4.8707 -8.5427 25 1 11.5246 7.2233 -7.9560 26 6 7.1030 4.8379 -2.7805 27 6 4.1657 0.6993 1.0381 28 8 4.9240 1.2639 1.7903 29 8 3.8585 -0.5919 1.2389 30 1 -0.3634 0.5137 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0278 0.0005 33 1 1.8933 -0.5137 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 1.9980 3.1544 1.3073 36 1 0.5488 2.1252 1.3970 37 1 2.0698 1.5875 2.1492 38 1 3.5287 3.5254 0.2952 39 1 5.8536 4.8879 0.3191 40 1 5.0145 5.1845 -1.2224 41 1 8.1973 4.2596 0.3567 42 1 10.3682 4.3614 -0.7983 43 1 10.4559 4.7597 -3.2255 44 1 8.7073 6.0177 -8.3353 45 1 6.1863 4.9717 -3.3354 46 1 4.2689 -1.0278 1.9983 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001609901867.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:21:15 Heat of formation + Delta-G solvation = -167.050008 kcal Electronic energy + Delta-G solvation = -28601.562067 eV Core-core repulsion = 24455.571750 eV Total energy + Delta-G solvation = -4145.990317 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.99357 -40.95497 -40.23792 -38.35786 -37.85062 -37.19191 -34.92590 -34.34189 -33.49421 -31.13783 -30.73497 -29.15918 -28.01299 -27.19389 -24.98442 -23.70522 -23.22721 -22.48135 -21.47118 -20.89985 -19.53139 -19.07955 -18.87419 -18.39613 -17.72803 -17.03997 -16.89179 -16.69909 -16.52543 -16.08764 -15.70713 -15.59961 -15.50045 -15.07247 -14.98059 -14.80345 -14.43234 -14.31453 -14.06241 -13.97875 -13.60152 -13.00374 -12.98517 -12.86937 -12.79899 -12.77643 -12.50877 -12.49518 -12.39353 -12.23859 -12.08803 -11.91430 -11.77674 -11.56346 -11.35130 -11.21269 -11.07795 -10.80613 -10.38338 -9.65328 -8.98879 -8.47077 -6.15343 0.49891 0.74318 1.14140 1.34174 1.42378 1.44351 1.52816 1.87559 2.17587 2.34717 2.84084 3.16779 3.42768 3.48132 3.74650 3.83093 3.92938 4.06712 4.10585 4.19778 4.31128 4.34862 4.42405 4.53186 4.57034 4.61390 4.62561 4.72959 4.73512 4.79039 5.03099 5.04728 5.09949 5.13150 5.14037 5.23870 5.30266 5.30756 5.49387 5.56042 5.59193 5.63855 5.71767 5.74418 6.02928 6.20905 6.41637 6.92745 6.97658 7.17060 7.78771 8.76674 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.019200 B = 0.002285 C = 0.002170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1457.994627 B =12251.020451 C =12899.780689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.126 4.126 3 C -0.084 4.084 4 H 0.108 0.892 5 C -0.155 4.155 6 C 0.154 3.846 7 H 0.110 0.890 8 N -0.700 5.700 9 C 0.521 3.479 10 O -0.572 6.572 11 C -0.090 4.090 12 C -0.026 4.026 13 C -0.183 4.183 14 C -0.075 4.075 15 C -0.246 4.246 16 C 0.113 3.887 17 O -0.232 6.232 18 C -0.414 4.414 19 H 0.099 0.901 20 C -0.024 4.024 21 N -0.921 5.921 22 Si 1.020 2.980 23 H -0.253 1.253 24 H -0.268 1.268 25 H -0.265 1.265 26 C -0.188 4.188 27 C 0.473 3.527 28 O -0.542 6.542 29 O -0.501 6.501 30 H 0.064 0.936 31 H 0.056 0.944 32 H 0.057 0.943 33 H 0.061 0.939 34 H 0.083 0.917 35 H 0.066 0.934 36 H 0.087 0.913 37 H 0.045 0.955 38 H 0.423 0.577 39 H 0.139 0.861 40 H 0.132 0.868 41 H 0.140 0.860 42 H 0.143 0.857 43 H 0.118 0.882 44 H 0.273 0.727 45 H 0.112 0.888 46 H 0.422 0.578 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.960 -8.234 20.878 28.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.164 4.164 3 C -0.103 4.103 4 H 0.126 0.874 5 C -0.212 4.212 6 C 0.047 3.953 7 H 0.128 0.872 8 N -0.356 5.356 9 C 0.309 3.691 10 O -0.450 6.450 11 C -0.129 4.129 12 C -0.027 4.027 13 C -0.202 4.202 14 C -0.093 4.093 15 C -0.265 4.265 16 C 0.063 3.937 17 O -0.139 6.139 18 C -0.490 4.490 19 H 0.117 0.883 20 C -0.221 4.221 21 N -0.559 5.559 22 Si 0.839 3.161 23 H -0.177 1.177 24 H -0.193 1.193 25 H -0.190 1.190 26 C -0.207 4.207 27 C 0.315 3.685 28 O -0.432 6.432 29 O -0.314 6.314 30 H 0.083 0.917 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.080 0.920 34 H 0.101 0.899 35 H 0.085 0.915 36 H 0.106 0.894 37 H 0.064 0.936 38 H 0.262 0.738 39 H 0.157 0.843 40 H 0.150 0.850 41 H 0.157 0.843 42 H 0.161 0.839 43 H 0.136 0.864 44 H 0.082 0.918 45 H 0.130 0.870 46 H 0.284 0.716 Dipole moment (debyes) X Y Z Total from point charges -16.706 -8.445 20.021 27.409 hybrid contribution 1.109 -0.051 -0.135 1.118 sum -15.598 -8.496 19.885 26.663 Atomic orbital electron populations 1.21789 0.94326 1.02185 1.02370 1.21728 0.96866 0.94091 1.03699 1.21444 0.87936 0.99580 1.01356 0.87435 1.22002 1.03599 1.00497 0.95127 1.20682 0.96455 0.82968 0.95213 0.87225 1.45644 1.22141 1.08837 1.58951 1.21043 0.80273 0.91527 0.76245 1.90756 1.57313 1.50977 1.45981 1.20697 0.94525 0.93109 1.04603 1.19156 0.95357 0.96700 0.91490 1.20946 0.91636 1.07166 1.00406 1.21101 0.98978 0.96469 0.92716 1.21287 0.97673 1.11433 0.96103 1.19865 0.95285 0.94274 0.84304 1.83935 1.32535 1.80237 1.17220 1.21853 0.82895 1.49322 0.94904 0.88336 1.26594 1.04198 0.95797 0.95491 1.70188 1.30879 1.46658 1.08225 0.84521 0.74657 0.78644 0.78298 1.17657 1.19346 1.19025 1.20217 0.94948 1.10893 0.94690 1.24198 0.77715 0.80904 0.85727 1.90704 1.35259 1.69634 1.47554 1.84592 1.68342 1.24935 1.53554 0.91721 0.92461 0.92374 0.92039 0.89909 0.91461 0.89431 0.93619 0.73757 0.84276 0.85049 0.84266 0.83937 0.86425 0.91822 0.86994 0.71637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 9.67 71.98 0.70 -0.49 16 2 C -0.13 -1.33 4.69 30.59 0.14 -1.19 16 3 C -0.08 -0.92 2.38 -10.79 -0.03 -0.94 16 4 H 0.11 0.98 8.14 -2.39 -0.02 0.96 16 5 C -0.16 -1.30 8.53 71.98 0.61 -0.69 16 6 C 0.15 2.86 2.35 44.25 0.10 2.96 16 7 H 0.11 2.48 7.58 -2.39 -0.02 2.46 16 8 N -0.70 -13.33 4.53 -446.07 -2.02 -15.35 16 9 C 0.52 14.64 7.65 87.66 0.67 15.31 16 10 O -0.57 -22.60 15.70 -3.04 -0.05 -22.64 16 11 C -0.09 -2.20 5.83 29.10 0.17 -2.03 16 12 C -0.03 -0.96 4.37 -19.88 -0.09 -1.04 16 13 C -0.18 -6.47 9.70 22.30 0.22 -6.25 16 14 C -0.07 -2.87 10.04 22.25 0.22 -2.65 16 15 C -0.25 -11.65 9.17 22.39 0.21 -11.44 16 16 C 0.11 6.01 6.65 22.58 0.15 6.16 16 17 O -0.23 -14.66 9.76 -22.74 -0.22 -14.89 16 18 C -0.41 -25.14 9.49 67.92 0.64 -24.49 16 19 H 0.10 5.56 5.21 -2.91 -0.02 5.54 16 20 C -0.02 -1.39 5.49 84.83 0.47 -0.92 16 21 N -0.92 -57.95 13.67 21.61 0.30 -57.65 16 22 Si 1.02 44.31 29.55 68.60 2.03 46.34 16 23 H -0.25 -10.25 7.11 99.48 0.71 -9.54 16 24 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 25 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 26 C -0.19 -8.57 9.65 22.39 0.22 -8.35 16 27 C 0.47 9.85 6.33 71.24 0.45 10.31 16 28 O -0.54 -14.97 17.08 21.98 0.38 -14.60 16 29 O -0.50 -7.14 10.43 -51.44 -0.54 -7.68 16 30 H 0.06 0.41 6.57 -2.39 -0.02 0.39 16 31 H 0.06 0.44 8.14 -2.39 -0.02 0.42 16 32 H 0.06 0.46 8.14 -2.38 -0.02 0.44 16 33 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 34 H 0.08 0.92 5.68 -2.39 -0.01 0.91 16 35 H 0.07 0.45 6.51 -2.39 -0.02 0.44 16 36 H 0.09 0.48 6.57 -2.38 -0.02 0.47 16 37 H 0.04 0.50 7.22 -2.39 -0.02 0.48 16 38 H 0.42 4.92 6.87 -92.71 -0.64 4.28 16 39 H 0.14 2.39 8.09 -2.38 -0.02 2.37 16 40 H 0.13 2.47 8.08 -2.39 -0.02 2.46 16 41 H 0.14 3.98 8.06 -2.91 -0.02 3.95 16 42 H 0.14 4.40 8.06 -2.91 -0.02 4.38 16 43 H 0.12 5.63 5.64 -2.91 -0.02 5.61 16 44 H 0.27 15.61 8.31 -92.71 -0.77 14.84 16 45 H 0.11 4.98 8.06 -2.91 -0.02 4.96 16 46 H 0.42 2.85 9.10 -74.06 -0.67 2.18 16 Total: -1.00 -88.66 382.14 4.45 -84.21 By element: Atomic # 1 Polarization: 28.29 SS G_CDS: -0.27 Total: 28.01 kcal Atomic # 6 Polarization: -30.61 SS G_CDS: 4.86 Total: -25.75 kcal Atomic # 7 Polarization: -71.28 SS G_CDS: -1.72 Total: -73.00 kcal Atomic # 8 Polarization: -59.38 SS G_CDS: -0.43 Total: -59.81 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 2.03 Total: 46.34 kcal Total: -88.66 4.45 -84.21 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609901867.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.840 kcal (2) G-P(sol) polarization free energy of solvation -88.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds