Wall clock time and date at job start Tue Mar 31 2020 19:21:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53003 * 109.46905 * 2 1 4 4 H 1.09000 * 109.47186 * 51.97601 * 3 2 1 5 5 C 1.53002 * 109.47259 * 291.97382 * 3 2 1 6 6 C 1.53003 * 109.46711 * 171.97696 * 3 2 1 7 7 H 1.09002 * 109.47036 * 303.29895 * 6 3 2 8 8 N 1.46498 * 109.47165 * 63.30390 * 6 3 2 9 9 C 1.34785 * 119.99841 * 205.00120 * 8 6 3 10 10 O 1.21280 * 119.99610 * 359.97438 * 9 8 6 11 11 C 1.50697 * 120.00153 * 180.02562 * 9 8 6 12 12 C 1.50700 * 109.47106 * 179.97438 * 11 9 8 13 13 C 1.38325 * 119.96243 * 269.71919 * 12 11 9 14 14 C 1.38284 * 120.13405 * 179.76449 * 13 12 11 15 15 C 1.38122 * 120.06712 * 0.51671 * 14 13 12 16 16 C 1.38855 * 119.93359 * 359.74004 * 15 14 13 17 17 O 1.35749 * 120.06727 * 179.97438 * 16 15 14 18 18 C 1.34825 * 117.00268 * 3.67110 * 17 16 15 19 19 H 1.07997 * 119.99666 * 5.45300 * 18 17 16 20 20 C 1.38657 * 119.99901 * 185.44663 * 18 17 16 21 21 N 1.31548 * 120.00042 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99594 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.47220 * 60.00572 * 22 20 18 24 24 H 1.48498 * 109.46997 * 180.02562 * 22 20 18 25 25 H 1.48495 * 109.47517 * 300.00287 * 22 20 18 26 26 C 1.38071 * 119.96662 * 89.99877 * 12 11 9 27 27 C 1.50705 * 109.47081 * 183.30461 * 6 3 2 28 28 O 1.20826 * 119.99478 * 263.68859 * 27 6 3 29 29 O 1.34228 * 119.99864 * 83.67930 * 27 6 3 30 30 H 1.09000 * 109.46731 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.46982 * 299.99958 * 1 2 3 32 32 H 1.08996 * 109.46930 * 59.99940 * 1 2 3 33 33 H 1.09002 * 109.47082 * 240.00586 * 2 1 3 34 34 H 1.08999 * 109.47407 * 120.00138 * 2 1 3 35 35 H 1.09002 * 109.46953 * 180.02562 * 5 3 2 36 36 H 1.09000 * 109.47201 * 300.00211 * 5 3 2 37 37 H 1.08999 * 109.46944 * 60.00214 * 5 3 2 38 38 H 0.96993 * 120.00442 * 24.99520 * 8 6 3 39 39 H 1.09002 * 109.47215 * 59.99633 * 11 9 8 40 40 H 1.08997 * 109.47071 * 300.00174 * 11 9 8 41 41 H 1.07995 * 119.93319 * 0.02562 * 13 12 11 42 42 H 1.07997 * 119.96220 * 180.25761 * 14 13 12 43 43 H 1.08003 * 120.02923 * 179.72057 * 15 14 13 44 44 H 0.97006 * 119.99833 * 180.02562 * 21 20 18 45 45 H 1.08001 * 120.03346 * 359.95904 * 26 12 11 46 46 H 0.96705 * 116.99478 * 180.02562 * 29 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5643 1.9961 0.8095 5 6 1.7011 2.1033 -1.3377 6 6 3.5567 1.4472 0.2013 7 1 3.8021 0.9247 1.1259 8 7 4.2013 0.7714 -0.9274 9 6 5.4150 0.2066 -0.7708 10 8 5.9736 0.2582 0.3044 11 6 6.0783 -0.4881 -1.9320 12 6 7.4160 -1.0285 -1.4965 13 6 8.5506 -0.2473 -1.6217 14 6 9.7791 -0.7378 -1.2187 15 6 9.8782 -2.0140 -0.6996 16 6 8.7419 -2.8025 -0.5776 17 8 8.8363 -4.0573 -0.0683 18 6 10.0490 -4.4501 0.3708 19 1 10.8696 -3.7483 0.3900 20 6 10.2424 -5.7551 0.7978 21 7 9.2429 -6.6099 0.7740 22 14 11.9228 -6.2994 1.4054 23 1 12.3159 -5.4765 2.5775 24 1 11.8668 -7.7297 1.8008 25 1 12.9219 -6.1250 0.3208 26 6 7.5085 -2.3049 -0.9784 27 6 4.0483 2.8695 0.2826 28 8 4.4899 3.4131 -0.7020 29 8 3.9955 3.5323 1.4486 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 1.8934 -0.5137 -0.8901 34 1 1.8934 -0.5138 0.8899 35 1 2.0648 3.1309 -1.3378 36 1 2.1768 1.5498 -2.1472 37 1 0.6206 2.1000 -1.4812 38 1 3.7546 0.7304 -1.7874 39 1 6.2214 0.2220 -2.7466 40 1 5.4476 -1.3092 -2.2726 41 1 8.4763 0.7493 -2.0311 42 1 10.6626 -0.1240 -1.3139 43 1 10.8387 -2.3981 -0.3893 44 1 9.3781 -7.5228 1.0731 45 1 6.6228 -2.9158 -0.8845 46 1 4.3220 4.4425 1.4513 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001609901869.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:21:20 Heat of formation + Delta-G solvation = -143.199411 kcal Electronic energy + Delta-G solvation = -28674.891423 eV Core-core repulsion = 24529.935345 eV Total energy + Delta-G solvation = -4144.956078 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.06773 -39.59456 -38.76041 -37.48495 -36.36887 -36.26436 -33.85239 -32.37899 -31.99860 -30.48995 -29.16655 -28.26281 -26.69570 -25.17969 -24.79052 -22.22648 -21.59230 -21.29481 -20.37148 -20.07418 -18.35964 -17.73525 -17.35314 -17.03410 -16.81111 -16.17712 -15.69507 -15.27271 -15.06968 -14.86975 -14.47152 -14.35035 -14.19013 -13.98175 -13.75724 -13.52162 -13.40018 -13.21414 -12.59224 -12.52335 -12.44514 -12.35949 -11.97555 -11.81399 -11.73185 -11.53592 -11.47836 -11.26230 -11.20726 -11.00725 -10.77854 -10.75802 -10.75098 -10.56583 -10.41736 -9.86404 -9.38679 -9.30375 -8.78142 -8.01437 -7.15793 -6.39295 -3.98018 1.91917 2.12375 2.42987 2.46125 2.84638 3.16972 3.17356 3.20488 3.23059 4.01474 4.13869 4.37798 4.39882 4.57762 4.84820 4.90582 4.95930 4.99637 5.08893 5.11527 5.16824 5.20049 5.23447 5.34924 5.46922 5.52063 5.55953 5.59308 5.71656 5.72519 5.80007 5.88994 5.96754 5.99982 6.12333 6.23774 6.25716 6.39525 6.71136 6.97552 7.13127 7.29530 7.32093 7.42992 7.49575 7.65628 7.88697 8.06007 8.19256 9.06625 9.77771 10.79025 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.015962 B = 0.002470 C = 0.002303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1753.779255 B =11332.536537 C =12155.186170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.119 4.119 3 C -0.092 4.092 4 H 0.095 0.905 5 C -0.157 4.157 6 C 0.161 3.839 7 H 0.125 0.875 8 N -0.717 5.717 9 C 0.518 3.482 10 O -0.513 6.513 11 C -0.091 4.091 12 C -0.034 4.034 13 C -0.196 4.196 14 C -0.075 4.075 15 C -0.230 4.230 16 C 0.154 3.846 17 O -0.179 6.179 18 C -0.390 4.390 19 H 0.090 0.910 20 C 0.039 3.961 21 N -0.865 5.865 22 Si 0.940 3.060 23 H -0.270 1.270 24 H -0.278 1.278 25 H -0.270 1.270 26 C -0.174 4.174 27 C 0.470 3.530 28 O -0.507 6.507 29 O -0.514 6.514 30 H 0.058 0.942 31 H 0.055 0.945 32 H 0.056 0.944 33 H 0.070 0.930 34 H 0.071 0.929 35 H 0.058 0.942 36 H 0.060 0.940 37 H 0.069 0.931 38 H 0.406 0.594 39 H 0.101 0.899 40 H 0.102 0.898 41 H 0.102 0.898 42 H 0.107 0.893 43 H 0.126 0.874 44 H 0.269 0.731 45 H 0.114 0.886 46 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.751 16.985 -4.083 24.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.156 4.156 3 C -0.111 4.111 4 H 0.113 0.887 5 C -0.214 4.214 6 C 0.053 3.947 7 H 0.142 0.858 8 N -0.373 5.373 9 C 0.305 3.695 10 O -0.386 6.386 11 C -0.131 4.131 12 C -0.035 4.035 13 C -0.215 4.215 14 C -0.093 4.093 15 C -0.250 4.250 16 C 0.101 3.899 17 O -0.083 6.083 18 C -0.467 4.467 19 H 0.108 0.892 20 C -0.165 4.165 21 N -0.500 5.500 22 Si 0.765 3.235 23 H -0.195 1.195 24 H -0.203 1.203 25 H -0.196 1.196 26 C -0.193 4.193 27 C 0.310 3.690 28 O -0.394 6.394 29 O -0.325 6.325 30 H 0.077 0.923 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.088 0.912 34 H 0.090 0.910 35 H 0.078 0.922 36 H 0.079 0.921 37 H 0.088 0.912 38 H 0.243 0.757 39 H 0.119 0.881 40 H 0.120 0.880 41 H 0.120 0.880 42 H 0.125 0.875 43 H 0.144 0.856 44 H 0.079 0.921 45 H 0.132 0.868 46 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges -16.544 16.314 -3.470 23.492 hybrid contribution 1.034 0.514 -0.081 1.158 sum -15.509 16.828 -3.551 23.159 Atomic orbital electron populations 1.21813 0.95200 1.02086 1.01921 1.21574 0.96262 0.94416 1.03353 1.21438 0.90634 0.98883 1.00106 0.88668 1.21977 1.02430 1.00852 0.96139 1.20433 0.93416 0.86738 0.94094 0.85784 1.45901 1.20435 1.57095 1.13906 1.20946 0.80079 0.77863 0.90637 1.90778 1.62666 1.57637 1.27518 1.20571 0.95549 1.00858 0.96139 1.18634 0.92414 0.93432 0.99006 1.20367 0.92683 0.99361 1.09098 1.20680 0.96599 0.94910 0.97106 1.21183 0.99143 0.95804 1.08845 1.19278 0.93100 0.86292 0.91238 1.83981 1.33278 1.23848 1.67192 1.21260 0.86628 0.96244 1.42547 0.89222 1.25261 0.99425 0.94664 0.97138 1.70028 1.30935 1.04924 1.44131 0.85799 0.80405 0.78057 0.79276 1.19528 1.20314 1.19550 1.19920 0.95845 0.96004 1.07527 1.24127 0.74825 0.89766 0.80284 1.90701 1.42386 1.68927 1.37404 1.84541 1.78474 1.32443 1.37076 0.92327 0.92602 0.92467 0.91176 0.91042 0.92248 0.92108 0.91232 0.75721 0.88111 0.87955 0.87962 0.87498 0.85609 0.92065 0.86784 0.73238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.82 9.71 37.16 0.36 -0.46 16 2 C -0.12 -0.76 5.15 -26.73 -0.14 -0.90 16 3 C -0.09 -0.61 2.18 -90.62 -0.20 -0.81 16 4 H 0.10 0.57 8.13 -51.93 -0.42 0.14 16 5 C -0.16 -0.95 8.55 37.16 0.32 -0.63 16 6 C 0.16 1.60 2.18 -69.08 -0.15 1.45 16 7 H 0.12 1.40 7.58 -51.93 -0.39 1.01 16 8 N -0.72 -7.50 4.13 -54.93 -0.23 -7.72 16 9 C 0.52 7.54 7.78 -10.98 -0.09 7.45 16 10 O -0.51 -9.95 15.70 5.56 0.09 -9.86 16 11 C -0.09 -1.23 5.83 -29.04 -0.17 -1.40 16 12 C -0.03 -0.64 4.37 -104.65 -0.46 -1.10 16 13 C -0.20 -3.68 9.70 -39.53 -0.38 -4.07 16 14 C -0.07 -1.48 10.04 -39.61 -0.40 -1.88 16 15 C -0.23 -5.30 9.15 -39.40 -0.36 -5.66 16 16 C 0.15 3.90 6.65 -39.11 -0.26 3.64 16 17 O -0.18 -5.28 9.76 0.07 0.00 -5.28 16 18 C -0.39 -11.23 9.46 30.89 0.29 -10.94 16 19 H 0.09 2.40 5.25 -52.49 -0.28 2.12 16 20 C 0.04 1.10 5.49 -17.52 -0.10 1.00 16 21 N -0.86 -25.80 13.67 55.48 0.76 -25.04 16 22 Si 0.94 20.99 29.55 -169.99 -5.02 15.97 16 23 H -0.27 -5.88 7.11 56.52 0.40 -5.47 16 24 H -0.28 -6.05 7.11 56.52 0.40 -5.64 16 25 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 26 C -0.17 -3.83 9.65 -39.40 -0.38 -4.21 16 27 C 0.47 5.33 6.60 36.01 0.24 5.56 16 28 O -0.51 -6.97 16.85 -18.75 -0.32 -7.28 16 29 O -0.51 -4.72 13.42 -39.25 -0.53 -5.25 16 30 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.06 0.27 6.67 -51.93 -0.35 -0.08 16 33 H 0.07 0.45 7.93 -51.93 -0.41 0.03 16 34 H 0.07 0.52 8.13 -51.93 -0.42 0.10 16 35 H 0.06 0.44 6.96 -51.93 -0.36 0.08 16 36 H 0.06 0.34 6.36 -51.93 -0.33 0.01 16 37 H 0.07 0.33 6.67 -51.93 -0.35 -0.01 16 38 H 0.41 3.11 6.67 -40.82 -0.27 2.84 16 39 H 0.10 1.10 8.08 -51.93 -0.42 0.68 16 40 H 0.10 1.12 8.08 -51.93 -0.42 0.70 16 41 H 0.10 1.67 8.06 -52.49 -0.42 1.25 16 42 H 0.11 1.80 8.06 -52.49 -0.42 1.37 16 43 H 0.13 2.87 5.68 -52.48 -0.30 2.57 16 44 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 45 H 0.11 2.41 8.06 -52.49 -0.42 1.98 16 46 H 0.41 2.10 9.10 45.56 0.41 2.51 16 LS Contribution 386.95 15.07 5.83 5.83 Total: -1.00 -37.16 386.95 -6.84 -44.00 By element: Atomic # 1 Polarization: 13.13 SS G_CDS: -5.55 Total: 7.57 kcal Atomic # 6 Polarization: -11.07 SS G_CDS: -1.87 Total: -12.93 kcal Atomic # 7 Polarization: -33.29 SS G_CDS: 0.53 Total: -32.76 kcal Atomic # 8 Polarization: -26.91 SS G_CDS: -0.75 Total: -27.67 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -37.16 -6.84 -44.00 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609901869.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.204 kcal (2) G-P(sol) polarization free energy of solvation -37.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds