Wall clock time and date at job start Tue Mar 31 2020 19:21:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53003 * 109.46905 * 2 1 4 4 H 1.09000 * 109.47186 * 51.97601 * 3 2 1 5 5 C 1.53002 * 109.47259 * 291.97382 * 3 2 1 6 6 C 1.53003 * 109.46711 * 171.97696 * 3 2 1 7 7 H 1.09002 * 109.47036 * 303.29895 * 6 3 2 8 8 N 1.46498 * 109.47165 * 63.30390 * 6 3 2 9 9 C 1.34785 * 119.99841 * 205.00120 * 8 6 3 10 10 O 1.21280 * 119.99610 * 359.97438 * 9 8 6 11 11 C 1.50697 * 120.00153 * 180.02562 * 9 8 6 12 12 C 1.50700 * 109.47106 * 179.97438 * 11 9 8 13 13 C 1.38325 * 119.96243 * 269.71919 * 12 11 9 14 14 C 1.38284 * 120.13405 * 179.76449 * 13 12 11 15 15 C 1.38122 * 120.06712 * 0.51671 * 14 13 12 16 16 C 1.38855 * 119.93359 * 359.74004 * 15 14 13 17 17 O 1.35749 * 120.06727 * 179.97438 * 16 15 14 18 18 C 1.34825 * 117.00268 * 3.67110 * 17 16 15 19 19 H 1.07997 * 119.99666 * 5.45300 * 18 17 16 20 20 C 1.38657 * 119.99901 * 185.44663 * 18 17 16 21 21 N 1.31548 * 120.00042 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99594 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.47220 * 60.00572 * 22 20 18 24 24 H 1.48498 * 109.46997 * 180.02562 * 22 20 18 25 25 H 1.48495 * 109.47517 * 300.00287 * 22 20 18 26 26 C 1.38071 * 119.96662 * 89.99877 * 12 11 9 27 27 C 1.50705 * 109.47081 * 183.30461 * 6 3 2 28 28 O 1.20826 * 119.99478 * 263.68859 * 27 6 3 29 29 O 1.34228 * 119.99864 * 83.67930 * 27 6 3 30 30 H 1.09000 * 109.46731 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.46982 * 299.99958 * 1 2 3 32 32 H 1.08996 * 109.46930 * 59.99940 * 1 2 3 33 33 H 1.09002 * 109.47082 * 240.00586 * 2 1 3 34 34 H 1.08999 * 109.47407 * 120.00138 * 2 1 3 35 35 H 1.09002 * 109.46953 * 180.02562 * 5 3 2 36 36 H 1.09000 * 109.47201 * 300.00211 * 5 3 2 37 37 H 1.08999 * 109.46944 * 60.00214 * 5 3 2 38 38 H 0.96993 * 120.00442 * 24.99520 * 8 6 3 39 39 H 1.09002 * 109.47215 * 59.99633 * 11 9 8 40 40 H 1.08997 * 109.47071 * 300.00174 * 11 9 8 41 41 H 1.07995 * 119.93319 * 0.02562 * 13 12 11 42 42 H 1.07997 * 119.96220 * 180.25761 * 14 13 12 43 43 H 1.08003 * 120.02923 * 179.72057 * 15 14 13 44 44 H 0.97006 * 119.99833 * 180.02562 * 21 20 18 45 45 H 1.08001 * 120.03346 * 359.95904 * 26 12 11 46 46 H 0.96705 * 116.99478 * 180.02562 * 29 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5643 1.9961 0.8095 5 6 1.7011 2.1033 -1.3377 6 6 3.5567 1.4472 0.2013 7 1 3.8021 0.9247 1.1259 8 7 4.2013 0.7714 -0.9274 9 6 5.4150 0.2066 -0.7708 10 8 5.9736 0.2582 0.3044 11 6 6.0783 -0.4881 -1.9320 12 6 7.4160 -1.0285 -1.4965 13 6 8.5506 -0.2473 -1.6217 14 6 9.7791 -0.7378 -1.2187 15 6 9.8782 -2.0140 -0.6996 16 6 8.7419 -2.8025 -0.5776 17 8 8.8363 -4.0573 -0.0683 18 6 10.0490 -4.4501 0.3708 19 1 10.8696 -3.7483 0.3900 20 6 10.2424 -5.7551 0.7978 21 7 9.2429 -6.6099 0.7740 22 14 11.9228 -6.2994 1.4054 23 1 12.3159 -5.4765 2.5775 24 1 11.8668 -7.7297 1.8008 25 1 12.9219 -6.1250 0.3208 26 6 7.5085 -2.3049 -0.9784 27 6 4.0483 2.8695 0.2826 28 8 4.4899 3.4131 -0.7020 29 8 3.9955 3.5323 1.4486 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 1.8934 -0.5137 -0.8901 34 1 1.8934 -0.5138 0.8899 35 1 2.0648 3.1309 -1.3378 36 1 2.1768 1.5498 -2.1472 37 1 0.6206 2.1000 -1.4812 38 1 3.7546 0.7304 -1.7874 39 1 6.2214 0.2220 -2.7466 40 1 5.4476 -1.3092 -2.2726 41 1 8.4763 0.7493 -2.0311 42 1 10.6626 -0.1240 -1.3139 43 1 10.8387 -2.3981 -0.3893 44 1 9.3781 -7.5228 1.0731 45 1 6.6228 -2.9158 -0.8845 46 1 4.3220 4.4425 1.4513 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001609901869.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:21:19 Heat of formation + Delta-G solvation = -169.251940 kcal Electronic energy + Delta-G solvation = -28676.021145 eV Core-core repulsion = 24529.935345 eV Total energy + Delta-G solvation = -4146.085800 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.97862 -40.94807 -40.26656 -38.47947 -37.92625 -37.10927 -34.76113 -34.34064 -33.48851 -31.28326 -30.80824 -29.15788 -27.96610 -27.17875 -25.36254 -23.47979 -23.14032 -22.35620 -21.67128 -20.82107 -19.53629 -19.21738 -18.83053 -18.31988 -17.91380 -17.05097 -16.78404 -16.60718 -16.52765 -16.11367 -15.81187 -15.57067 -15.51967 -15.11417 -14.97930 -14.72350 -14.59385 -14.30591 -14.05190 -13.92956 -13.59191 -13.03632 -13.00940 -12.96304 -12.84503 -12.53956 -12.47816 -12.45514 -12.42434 -12.23951 -12.19037 -12.13071 -11.84083 -11.55043 -11.48343 -11.23138 -11.09815 -10.79102 -10.36354 -9.65015 -8.98394 -8.46836 -6.15133 0.50195 0.74964 1.05487 1.34084 1.44119 1.45312 1.50469 1.86876 2.17945 2.33296 2.84275 3.17794 3.42408 3.48753 3.74133 3.81028 3.85435 4.05543 4.10829 4.20569 4.31826 4.35470 4.42400 4.45567 4.56866 4.58480 4.62433 4.65901 4.73425 4.75228 4.99094 5.05161 5.07533 5.12176 5.12683 5.22016 5.27000 5.30701 5.41020 5.51616 5.53638 5.64071 5.72280 5.74569 6.02727 6.21226 6.39978 6.89517 6.97721 7.14342 7.78758 8.76432 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.015962 B = 0.002470 C = 0.002303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1753.779255 B =11332.536537 C =12155.186170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.118 4.118 3 C -0.081 4.081 4 H 0.105 0.895 5 C -0.154 4.154 6 C 0.156 3.844 7 H 0.108 0.892 8 N -0.697 5.697 9 C 0.518 3.482 10 O -0.570 6.570 11 C -0.090 4.090 12 C -0.026 4.026 13 C -0.184 4.184 14 C -0.074 4.074 15 C -0.247 4.247 16 C 0.113 3.887 17 O -0.232 6.232 18 C -0.415 4.415 19 H 0.098 0.902 20 C -0.022 4.022 21 N -0.920 5.920 22 Si 1.018 2.982 23 H -0.260 1.260 24 H -0.269 1.269 25 H -0.256 1.256 26 C -0.188 4.188 27 C 0.471 3.529 28 O -0.534 6.534 29 O -0.513 6.513 30 H 0.056 0.944 31 H 0.058 0.942 32 H 0.068 0.932 33 H 0.072 0.928 34 H 0.057 0.943 35 H 0.046 0.954 36 H 0.066 0.934 37 H 0.086 0.914 38 H 0.422 0.578 39 H 0.140 0.860 40 H 0.131 0.869 41 H 0.141 0.859 42 H 0.143 0.857 43 H 0.118 0.882 44 H 0.273 0.727 45 H 0.112 0.888 46 H 0.426 0.574 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.385 19.488 -5.471 26.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.156 4.156 3 C -0.100 4.100 4 H 0.123 0.877 5 C -0.211 4.211 6 C 0.049 3.951 7 H 0.126 0.874 8 N -0.353 5.353 9 C 0.307 3.693 10 O -0.448 6.448 11 C -0.130 4.130 12 C -0.027 4.027 13 C -0.202 4.202 14 C -0.092 4.092 15 C -0.266 4.266 16 C 0.063 3.937 17 O -0.139 6.139 18 C -0.492 4.492 19 H 0.116 0.884 20 C -0.219 4.219 21 N -0.558 5.558 22 Si 0.837 3.163 23 H -0.184 1.184 24 H -0.194 1.194 25 H -0.180 1.180 26 C -0.208 4.208 27 C 0.312 3.688 28 O -0.423 6.423 29 O -0.326 6.326 30 H 0.075 0.925 31 H 0.077 0.923 32 H 0.087 0.913 33 H 0.090 0.910 34 H 0.076 0.924 35 H 0.065 0.935 36 H 0.085 0.915 37 H 0.105 0.895 38 H 0.262 0.738 39 H 0.158 0.842 40 H 0.149 0.851 41 H 0.158 0.842 42 H 0.161 0.839 43 H 0.136 0.864 44 H 0.082 0.918 45 H 0.130 0.870 46 H 0.288 0.712 Dipole moment (debyes) X Y Z Total from point charges -17.231 18.895 -4.900 26.037 hybrid contribution 1.062 0.062 0.262 1.096 sum -16.169 18.958 -4.638 25.344 Atomic orbital electron populations 1.21798 0.94102 1.02228 1.02658 1.21569 0.97181 0.93993 1.02831 1.21428 0.88071 0.99348 1.01147 0.87692 1.21973 1.03633 0.99960 0.95583 1.20599 0.95394 0.85944 0.93199 0.87399 1.45686 1.19120 1.55641 1.14885 1.21076 0.80778 0.77564 0.89923 1.90771 1.64400 1.60085 1.29552 1.20697 0.93051 1.02618 0.96587 1.19148 0.95291 0.91750 0.96500 1.20945 0.92019 1.00575 1.06683 1.21104 0.98728 0.93736 0.95654 1.21299 0.98204 0.97222 1.09880 1.19873 0.95237 0.85782 0.92813 1.83936 1.33908 1.26177 1.69832 1.21756 0.87006 0.97119 1.43273 0.88441 1.26575 1.04098 0.94260 0.96995 1.70173 1.33736 1.05503 1.46429 0.84664 0.74718 0.77818 0.79101 1.18446 1.19358 1.18035 1.20203 0.94768 0.97683 1.08103 1.24268 0.74144 0.90088 0.80272 1.90686 1.43734 1.69652 1.38239 1.84507 1.78190 1.33822 1.36061 0.92535 0.92277 0.91321 0.90957 0.92406 0.93481 0.91463 0.89499 0.73794 0.84233 0.85106 0.84167 0.83932 0.86421 0.91799 0.87032 0.71196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 9.71 71.98 0.70 -0.60 16 2 C -0.12 -1.32 5.15 30.60 0.16 -1.16 16 3 C -0.08 -0.92 2.18 -10.79 -0.02 -0.95 16 4 H 0.10 1.03 8.13 -2.39 -0.02 1.01 16 5 C -0.15 -1.44 8.55 71.98 0.62 -0.82 16 6 C 0.16 2.91 2.18 44.25 0.10 3.01 16 7 H 0.11 2.43 7.58 -2.39 -0.02 2.41 16 8 N -0.70 -13.08 4.13 -446.08 -1.84 -14.92 16 9 C 0.52 14.12 7.78 87.65 0.68 14.80 16 10 O -0.57 -21.86 15.70 -3.03 -0.05 -21.91 16 11 C -0.09 -2.14 5.83 29.10 0.17 -1.98 16 12 C -0.03 -0.93 4.37 -19.88 -0.09 -1.02 16 13 C -0.18 -6.34 9.70 22.30 0.22 -6.12 16 14 C -0.07 -2.81 10.04 22.25 0.22 -2.59 16 15 C -0.25 -11.59 9.15 22.39 0.20 -11.38 16 16 C 0.11 5.98 6.65 22.58 0.15 6.13 16 17 O -0.23 -14.56 9.76 -22.68 -0.22 -14.78 16 18 C -0.42 -25.19 9.46 67.92 0.64 -24.55 16 19 H 0.10 5.47 5.25 -2.91 -0.02 5.46 16 20 C -0.02 -1.28 5.49 84.84 0.47 -0.81 16 21 N -0.92 -57.70 13.67 21.61 0.30 -57.40 16 22 Si 1.02 44.13 29.55 68.60 2.03 46.16 16 23 H -0.26 -10.71 7.11 99.48 0.71 -10.00 16 24 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 25 H -0.26 -10.38 7.11 99.48 0.71 -9.67 16 26 C -0.19 -8.48 9.65 22.39 0.22 -8.26 16 27 C 0.47 9.99 6.60 71.24 0.47 10.46 16 28 O -0.53 -13.70 16.85 21.96 0.37 -13.33 16 29 O -0.51 -8.71 13.42 -51.40 -0.69 -9.40 16 30 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 31 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 32 H 0.07 0.44 6.67 -2.39 -0.02 0.42 16 33 H 0.07 0.77 7.93 -2.39 -0.02 0.75 16 34 H 0.06 0.81 8.13 -2.39 -0.02 0.79 16 35 H 0.05 0.59 6.96 -2.39 -0.02 0.57 16 36 H 0.07 0.53 6.36 -2.39 -0.02 0.52 16 37 H 0.09 0.54 6.67 -2.39 -0.02 0.52 16 38 H 0.42 5.13 6.67 -92.71 -0.62 4.52 16 39 H 0.14 2.30 8.08 -2.39 -0.02 2.28 16 40 H 0.13 2.41 8.08 -2.39 -0.02 2.39 16 41 H 0.14 3.85 8.06 -2.91 -0.02 3.82 16 42 H 0.14 4.32 8.06 -2.91 -0.02 4.29 16 43 H 0.12 5.58 5.68 -2.91 -0.02 5.56 16 44 H 0.27 15.65 8.31 -92.70 -0.77 14.88 16 45 H 0.11 4.92 8.06 -2.91 -0.02 4.90 16 46 H 0.43 3.68 9.10 -74.05 -0.67 3.01 16 Total: -1.00 -86.97 386.95 4.53 -82.44 By element: Atomic # 1 Polarization: 29.25 SS G_CDS: -0.26 Total: 28.99 kcal Atomic # 6 Polarization: -30.74 SS G_CDS: 4.90 Total: -25.84 kcal Atomic # 7 Polarization: -70.78 SS G_CDS: -1.55 Total: -72.32 kcal Atomic # 8 Polarization: -58.84 SS G_CDS: -0.59 Total: -59.42 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.16 kcal Total: -86.97 4.53 -82.44 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609901869.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.813 kcal (2) G-P(sol) polarization free energy of solvation -86.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds