Wall clock time and date at job start Tue Mar 31 2020 18:17:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34225 * 117.00040 * 2 1 4 4 O 1.20826 * 120.00198 * 359.97438 * 3 2 1 5 5 C 1.50701 * 119.99857 * 179.97438 * 3 2 1 6 6 C 1.52996 * 109.47318 * 179.97438 * 5 3 2 7 7 N 1.46500 * 109.47424 * 180.02562 * 6 5 3 8 8 C 1.37100 * 119.99881 * 270.00108 * 7 6 5 9 9 H 1.07998 * 119.99547 * 143.50526 * 8 7 6 10 10 C 1.38954 * 119.99798 * 323.50510 * 8 7 6 11 11 N 1.31407 * 119.99599 * 160.24711 * 10 8 7 12 12 Si 1.86796 * 119.99975 * 340.24273 * 10 8 7 13 13 H 1.48504 * 109.47104 * 91.93994 * 12 10 8 14 14 H 1.48503 * 109.46900 * 211.93664 * 12 10 8 15 15 H 1.48494 * 109.47561 * 331.93465 * 12 10 8 16 16 C 1.34778 * 120.00013 * 89.99970 * 7 6 5 17 17 O 1.21292 * 119.99590 * 3.77799 * 16 7 6 18 18 C 1.50692 * 120.00014 * 183.77755 * 16 7 6 19 19 C 1.52997 * 109.47464 * 299.70429 * 18 16 7 20 20 C 1.52997 * 109.47482 * 179.70196 * 18 16 7 21 21 C 1.50699 * 109.47374 * 59.70261 * 18 16 7 22 22 C 1.38295 * 119.97213 * 5.77542 * 21 18 16 23 23 C 1.38243 * 120.11509 * 180.02562 * 22 21 18 24 24 C 1.38159 * 120.05278 * 359.68314 * 23 22 21 25 25 C 1.38713 * 119.94616 * 0.60886 * 24 23 22 26 26 O 1.35905 * 120.05540 * 179.67822 * 25 24 23 27 27 C 1.38126 * 119.97918 * 185.79631 * 21 18 16 28 28 H 1.08998 * 109.47217 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47029 * 300.00421 * 1 2 3 30 30 H 1.09003 * 109.46867 * 60.00119 * 1 2 3 31 31 H 1.09005 * 109.46870 * 59.99793 * 5 3 2 32 32 H 1.08999 * 109.47045 * 300.00085 * 5 3 2 33 33 H 1.09002 * 109.47157 * 59.99406 * 6 5 3 34 34 H 1.09002 * 109.47059 * 300.00592 * 6 5 3 35 35 H 0.97000 * 120.00035 * 180.02562 * 11 10 8 36 36 H 1.08999 * 109.47436 * 188.47405 * 19 18 16 37 37 H 1.09003 * 109.46911 * 308.47402 * 19 18 16 38 38 H 1.09001 * 109.47384 * 68.46559 * 19 18 16 39 39 H 1.09004 * 109.47263 * 303.54050 * 20 18 16 40 40 H 1.09000 * 109.47009 * 63.53400 * 20 18 16 41 41 H 1.08992 * 109.47908 * 183.53881 * 20 18 16 42 42 H 1.08001 * 119.93953 * 359.97438 * 22 21 18 43 43 H 1.07999 * 119.97074 * 179.97438 * 23 22 21 44 44 H 1.08007 * 120.02809 * 180.29755 * 24 23 22 45 45 H 0.96695 * 113.99888 * 269.72701 * 26 25 24 46 46 H 1.07997 * 120.02089 * 0.02564 * 27 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2748 0.0006 6 6 4.0003 2.7419 -0.0002 7 7 5.4633 2.8186 -0.0002 8 6 6.1478 2.8550 1.1871 9 1 7.0968 2.3478 1.2790 10 6 5.6206 3.5447 2.2721 11 7 6.0418 3.2776 3.4878 12 14 4.3132 4.8513 2.0024 13 1 2.9668 4.2341 2.1100 14 1 4.4547 5.9128 3.0312 15 1 4.4787 5.4459 0.6518 16 6 6.1362 2.8532 -1.1675 17 8 5.5289 2.8901 -2.2167 18 6 7.6431 2.8461 -1.1689 19 6 8.1597 4.0727 -0.4144 20 6 8.1520 2.8829 -2.6113 21 6 8.1402 1.5944 -0.4927 22 6 7.2426 0.6191 -0.0985 23 6 7.6953 -0.5301 0.5225 24 6 9.0470 -0.7098 0.7449 25 6 9.9489 0.2697 0.3559 26 8 11.2784 0.0981 0.5794 27 6 9.4920 1.4223 -0.2669 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 3.9564 0.7804 -0.8892 32 1 3.9557 0.7808 0.8908 33 1 3.6101 3.2367 0.8893 34 1 3.6108 3.2355 -0.8906 35 1 5.6735 3.7587 4.2453 36 1 9.2394 4.1500 -0.5425 37 1 7.6819 4.9696 -0.8086 38 1 7.9258 3.9725 0.6455 39 1 7.7333 2.0431 -3.1659 40 1 7.8453 3.8175 -3.0810 41 1 9.2398 2.8144 -2.6148 42 1 6.1859 0.7558 -0.2753 43 1 6.9922 -1.2901 0.8298 44 1 9.4007 -1.6099 1.2257 45 1 11.5815 0.4414 1.4311 46 1 10.1925 2.1846 -0.5743 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001632393914.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:17:18 Heat of formation + Delta-G solvation = -118.354331 kcal Electronic energy + Delta-G solvation = -30897.850849 eV Core-core repulsion = 26753.972135 eV Total energy + Delta-G solvation = -4143.878714 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.53859 -40.11153 -38.71438 -36.61791 -36.31543 -35.37669 -34.25499 -32.31609 -30.98278 -29.63442 -29.07288 -27.72398 -26.57336 -25.17029 -24.61809 -22.90675 -21.99140 -20.87893 -20.41687 -18.87154 -17.99745 -17.56078 -16.73619 -16.54509 -16.40695 -16.11454 -15.72904 -15.19655 -15.08365 -14.68309 -14.28327 -13.96385 -13.85023 -13.45675 -13.30828 -13.12852 -12.85066 -12.73492 -12.54728 -12.18787 -12.10380 -11.96710 -11.82149 -11.67399 -11.48186 -11.34299 -11.21216 -11.03088 -10.83204 -10.77150 -10.69876 -10.56018 -10.26158 -10.10822 -9.88307 -9.87316 -9.22219 -8.62653 -8.36662 -8.05143 -7.86854 -6.54031 -4.16023 1.73775 1.80228 2.45301 2.84636 3.04289 3.20639 3.27996 3.55161 4.05788 4.06558 4.21197 4.59716 4.82054 5.05400 5.13128 5.16136 5.19433 5.26070 5.43131 5.45794 5.50180 5.55558 5.59012 5.76084 5.84547 5.86053 5.94705 5.95354 6.15220 6.21072 6.24825 6.31807 6.37729 6.41923 6.49867 6.55483 6.58754 6.64097 6.83332 6.91801 7.10565 7.11998 7.19906 7.25149 7.93800 7.95068 7.97336 8.17006 8.82665 9.20603 9.51212 10.53256 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.011052 B = 0.004829 C = 0.004377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2532.832909 B = 5797.298132 C = 6395.756117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.362 6.362 3 C 0.467 3.533 4 O -0.510 6.510 5 C -0.125 4.125 6 C 0.109 3.891 7 N -0.463 5.463 8 C -0.351 4.351 9 H 0.127 0.873 10 C 0.071 3.929 11 N -0.853 5.853 12 Si 0.864 3.136 13 H -0.269 1.269 14 H -0.289 1.289 15 H -0.261 1.261 16 C 0.492 3.508 17 O -0.588 6.588 18 C -0.023 4.023 19 C -0.144 4.144 20 C -0.120 4.120 21 C -0.034 4.034 22 C -0.095 4.095 23 C -0.104 4.104 24 C -0.151 4.151 25 C 0.091 3.909 26 O -0.505 6.505 27 C -0.137 4.137 28 H 0.098 0.902 29 H 0.061 0.939 30 H 0.060 0.940 31 H 0.106 0.894 32 H 0.117 0.883 33 H 0.078 0.922 34 H 0.081 0.919 35 H 0.276 0.724 36 H 0.048 0.952 37 H 0.051 0.949 38 H 0.102 0.898 39 H 0.058 0.942 40 H 0.060 0.940 41 H 0.054 0.946 42 H 0.131 0.869 43 H 0.121 0.879 44 H 0.119 0.881 45 H 0.385 0.615 46 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.046 -6.074 -2.977 6.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.279 6.279 3 C 0.310 3.690 4 O -0.397 6.397 5 C -0.163 4.163 6 C -0.015 4.015 7 N -0.183 5.183 8 C -0.477 4.477 9 H 0.144 0.856 10 C -0.137 4.137 11 N -0.488 5.488 12 Si 0.692 3.308 13 H -0.196 1.196 14 H -0.216 1.216 15 H -0.185 1.185 16 C 0.282 3.718 17 O -0.472 6.472 18 C -0.026 4.026 19 C -0.201 4.201 20 C -0.178 4.178 21 C -0.035 4.035 22 C -0.113 4.113 23 C -0.123 4.123 24 C -0.169 4.169 25 C 0.048 3.952 26 O -0.314 6.314 27 C -0.155 4.155 28 H 0.116 0.884 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.124 0.876 32 H 0.135 0.865 33 H 0.096 0.904 34 H 0.099 0.901 35 H 0.086 0.914 36 H 0.067 0.933 37 H 0.070 0.930 38 H 0.120 0.880 39 H 0.077 0.923 40 H 0.079 0.921 41 H 0.073 0.927 42 H 0.148 0.852 43 H 0.139 0.861 44 H 0.137 0.863 45 H 0.240 0.760 46 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 0.496 -5.969 -3.825 7.106 hybrid contribution -0.979 0.995 0.829 1.624 sum -0.483 -4.974 -2.995 5.827 Atomic orbital electron populations 1.23209 0.77021 1.03282 1.02408 1.86532 1.22984 1.33941 1.84413 1.23964 0.92274 0.81063 0.71672 1.90651 1.67355 1.36342 1.45387 1.21831 0.86355 1.01842 1.06298 1.21473 0.83413 0.93217 1.03364 1.43792 1.03483 1.64847 1.06184 1.19482 1.07932 1.34116 0.86199 0.85590 1.25288 0.97058 0.96457 0.94873 1.69721 1.42366 1.38623 0.98096 0.87179 0.81913 0.82557 0.79121 1.19581 1.21617 1.18509 1.20214 0.89152 0.79029 0.83427 1.90563 1.70037 1.54733 1.31849 1.19451 0.92774 0.94344 0.96064 1.22035 0.99033 0.94788 1.04218 1.21651 0.99534 1.02679 0.93931 1.19335 0.92502 0.94506 0.97131 1.21358 1.00411 0.92651 0.96861 1.20900 0.94694 0.97741 0.98915 1.21244 0.93346 0.99678 1.02652 1.18299 0.82660 0.94008 1.00281 1.84782 1.20950 1.83610 1.42078 1.21059 0.95291 0.97133 1.02065 0.88372 0.92070 0.92083 0.87623 0.86537 0.90418 0.90080 0.91407 0.93293 0.93022 0.87966 0.92301 0.92122 0.92712 0.85174 0.86090 0.86299 0.76007 0.85900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 10.56 101.05 1.07 1.47 16 2 O -0.36 -5.51 10.57 -39.24 -0.41 -5.93 16 3 C 0.47 8.36 7.96 36.01 0.29 8.64 16 4 O -0.51 -10.43 15.73 -18.75 -0.29 -10.72 16 5 C -0.12 -2.24 5.36 -27.88 -0.15 -2.39 16 6 C 0.11 2.33 3.51 -4.04 -0.01 2.31 16 7 N -0.46 -10.09 1.28 -114.81 -0.15 -10.24 16 8 C -0.35 -8.06 5.80 -14.93 -0.09 -8.15 16 9 H 0.13 2.98 4.29 -52.49 -0.23 2.76 16 10 C 0.07 1.74 5.35 -17.47 -0.09 1.64 16 11 N -0.85 -21.81 13.96 55.50 0.77 -21.04 16 12 Si 0.86 20.02 24.95 -169.99 -4.24 15.78 16 13 H -0.27 -6.30 6.55 56.52 0.37 -5.93 16 14 H -0.29 -6.71 7.11 56.52 0.40 -6.30 16 15 H -0.26 -6.20 7.11 56.52 0.40 -5.80 16 16 C 0.49 10.58 5.17 -10.99 -0.06 10.52 16 17 O -0.59 -13.80 15.51 5.55 0.09 -13.71 16 18 C -0.02 -0.43 0.59 -156.82 -0.09 -0.53 16 19 C -0.14 -2.58 7.68 37.16 0.29 -2.29 16 20 C -0.12 -2.00 7.69 37.16 0.29 -1.71 16 21 C -0.03 -0.61 3.24 -104.64 -0.34 -0.95 16 22 C -0.09 -1.72 6.96 -39.56 -0.28 -2.00 16 23 C -0.10 -1.69 10.04 -39.61 -0.40 -2.09 16 24 C -0.15 -2.31 9.99 -39.43 -0.39 -2.71 16 25 C 0.09 1.43 6.70 -39.22 -0.26 1.17 16 26 O -0.50 -6.87 13.50 -19.44 -0.26 -7.14 16 27 C -0.14 -2.24 8.70 -39.43 -0.34 -2.58 16 28 H 0.10 0.80 8.14 -51.93 -0.42 0.37 16 29 H 0.06 0.70 8.13 -51.93 -0.42 0.28 16 30 H 0.06 0.69 8.13 -51.93 -0.42 0.26 16 31 H 0.11 1.78 7.95 -51.93 -0.41 1.37 16 32 H 0.12 2.02 8.14 -51.93 -0.42 1.60 16 33 H 0.08 1.78 2.78 -51.93 -0.14 1.63 16 34 H 0.08 1.81 7.33 -51.93 -0.38 1.43 16 35 H 0.28 6.73 8.31 -40.82 -0.34 6.39 16 36 H 0.05 0.74 7.41 -51.93 -0.38 0.36 16 37 H 0.05 0.93 8.12 -51.93 -0.42 0.51 16 38 H 0.10 2.08 5.33 -51.93 -0.28 1.80 16 39 H 0.06 1.01 8.01 -51.93 -0.42 0.59 16 40 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 41 H 0.05 0.78 7.64 -51.93 -0.40 0.38 16 42 H 0.13 2.49 4.60 -52.49 -0.24 2.25 16 43 H 0.12 1.69 8.06 -52.49 -0.42 1.27 16 44 H 0.12 1.57 8.06 -52.48 -0.42 1.15 16 45 H 0.39 3.54 9.06 45.56 0.41 3.95 16 46 H 0.12 1.82 7.22 -52.49 -0.38 1.44 16 LS Contribution 366.42 15.07 5.52 5.52 Total: -1.00 -29.81 366.42 -4.95 -34.76 By element: Atomic # 1 Polarization: 17.73 SS G_CDS: -5.39 Total: 12.34 kcal Atomic # 6 Polarization: 0.94 SS G_CDS: -0.58 Total: 0.36 kcal Atomic # 7 Polarization: -31.90 SS G_CDS: 0.63 Total: -31.28 kcal Atomic # 8 Polarization: -36.61 SS G_CDS: -0.89 Total: -37.50 kcal Atomic # 14 Polarization: 20.02 SS G_CDS: -4.24 Total: 15.78 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -29.81 -4.95 -34.76 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001632393914.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.591 kcal (2) G-P(sol) polarization free energy of solvation -29.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds