Wall clock time and date at job start Tue Mar 31 2020 18:17:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34225 * 117.00040 * 2 1 4 4 O 1.20826 * 120.00198 * 359.97438 * 3 2 1 5 5 C 1.50701 * 119.99857 * 179.97438 * 3 2 1 6 6 C 1.52996 * 109.47318 * 179.97438 * 5 3 2 7 7 N 1.46500 * 109.47424 * 180.02562 * 6 5 3 8 8 C 1.37100 * 119.99881 * 270.00108 * 7 6 5 9 9 H 1.07998 * 119.99547 * 143.50526 * 8 7 6 10 10 C 1.38954 * 119.99798 * 323.50510 * 8 7 6 11 11 N 1.31407 * 119.99599 * 160.24711 * 10 8 7 12 12 Si 1.86796 * 119.99975 * 340.24273 * 10 8 7 13 13 H 1.48504 * 109.47104 * 91.93994 * 12 10 8 14 14 H 1.48503 * 109.46900 * 211.93664 * 12 10 8 15 15 H 1.48494 * 109.47561 * 331.93465 * 12 10 8 16 16 C 1.34778 * 120.00013 * 89.99970 * 7 6 5 17 17 O 1.21292 * 119.99590 * 3.77799 * 16 7 6 18 18 C 1.50692 * 120.00014 * 183.77755 * 16 7 6 19 19 C 1.52997 * 109.47464 * 299.70429 * 18 16 7 20 20 C 1.52997 * 109.47482 * 179.70196 * 18 16 7 21 21 C 1.50699 * 109.47374 * 59.70261 * 18 16 7 22 22 C 1.38295 * 119.97213 * 5.77542 * 21 18 16 23 23 C 1.38243 * 120.11509 * 180.02562 * 22 21 18 24 24 C 1.38159 * 120.05278 * 359.68314 * 23 22 21 25 25 C 1.38713 * 119.94616 * 0.60886 * 24 23 22 26 26 O 1.35905 * 120.05540 * 179.67822 * 25 24 23 27 27 C 1.38126 * 119.97918 * 185.79631 * 21 18 16 28 28 H 1.08998 * 109.47217 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47029 * 300.00421 * 1 2 3 30 30 H 1.09003 * 109.46867 * 60.00119 * 1 2 3 31 31 H 1.09005 * 109.46870 * 59.99793 * 5 3 2 32 32 H 1.08999 * 109.47045 * 300.00085 * 5 3 2 33 33 H 1.09002 * 109.47157 * 59.99406 * 6 5 3 34 34 H 1.09002 * 109.47059 * 300.00592 * 6 5 3 35 35 H 0.97000 * 120.00035 * 180.02562 * 11 10 8 36 36 H 1.08999 * 109.47436 * 188.47405 * 19 18 16 37 37 H 1.09003 * 109.46911 * 308.47402 * 19 18 16 38 38 H 1.09001 * 109.47384 * 68.46559 * 19 18 16 39 39 H 1.09004 * 109.47263 * 303.54050 * 20 18 16 40 40 H 1.09000 * 109.47009 * 63.53400 * 20 18 16 41 41 H 1.08992 * 109.47908 * 183.53881 * 20 18 16 42 42 H 1.08001 * 119.93953 * 359.97438 * 22 21 18 43 43 H 1.07999 * 119.97074 * 179.97438 * 23 22 21 44 44 H 1.08007 * 120.02809 * 180.29755 * 24 23 22 45 45 H 0.96695 * 113.99888 * 269.72701 * 26 25 24 46 46 H 1.07997 * 120.02089 * 0.02564 * 27 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2748 0.0006 6 6 4.0003 2.7419 -0.0002 7 7 5.4633 2.8186 -0.0002 8 6 6.1478 2.8550 1.1871 9 1 7.0968 2.3478 1.2790 10 6 5.6206 3.5447 2.2721 11 7 6.0418 3.2776 3.4878 12 14 4.3132 4.8513 2.0024 13 1 2.9668 4.2341 2.1100 14 1 4.4547 5.9128 3.0312 15 1 4.4787 5.4459 0.6518 16 6 6.1362 2.8532 -1.1675 17 8 5.5289 2.8901 -2.2167 18 6 7.6431 2.8461 -1.1689 19 6 8.1597 4.0727 -0.4144 20 6 8.1520 2.8829 -2.6113 21 6 8.1402 1.5944 -0.4927 22 6 7.2426 0.6191 -0.0985 23 6 7.6953 -0.5301 0.5225 24 6 9.0470 -0.7098 0.7449 25 6 9.9489 0.2697 0.3559 26 8 11.2784 0.0981 0.5794 27 6 9.4920 1.4223 -0.2669 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 3.9564 0.7804 -0.8892 32 1 3.9557 0.7808 0.8908 33 1 3.6101 3.2367 0.8893 34 1 3.6108 3.2355 -0.8906 35 1 5.6735 3.7587 4.2453 36 1 9.2394 4.1500 -0.5425 37 1 7.6819 4.9696 -0.8086 38 1 7.9258 3.9725 0.6455 39 1 7.7333 2.0431 -3.1659 40 1 7.8453 3.8175 -3.0810 41 1 9.2398 2.8144 -2.6148 42 1 6.1859 0.7558 -0.2753 43 1 6.9922 -1.2901 0.8298 44 1 9.4007 -1.6099 1.2257 45 1 11.5815 0.4414 1.4311 46 1 10.1925 2.1846 -0.5743 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001632393914.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:17:17 Heat of formation + Delta-G solvation = -136.712948 kcal Electronic energy + Delta-G solvation = -30898.646938 eV Core-core repulsion = 26753.972135 eV Total energy + Delta-G solvation = -4144.674803 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.05131 -41.49664 -40.06618 -37.92259 -37.65119 -37.08152 -35.66745 -34.13394 -32.57495 -30.89091 -30.33592 -28.86368 -27.94960 -26.97773 -26.11428 -24.28263 -23.24104 -22.30427 -21.88985 -20.45242 -19.44055 -18.96491 -18.34568 -17.96915 -17.76034 -17.45495 -17.20480 -16.79326 -16.45574 -16.00424 -15.69971 -15.52288 -15.27513 -14.91820 -14.67659 -14.48131 -14.45399 -14.19799 -14.05458 -13.82094 -13.62202 -13.18828 -13.08334 -13.01867 -12.95940 -12.85806 -12.66839 -12.58255 -12.35961 -12.18413 -12.06728 -11.89183 -11.79371 -11.70639 -11.64973 -11.17036 -11.01143 -10.38855 -9.77255 -9.59651 -9.24841 -8.44013 -6.03179 0.49622 0.56069 1.02617 1.16030 1.30046 1.37630 1.53317 1.84827 2.16973 2.58776 2.84325 2.98245 3.45023 3.64912 3.78206 3.82930 3.89557 4.03936 4.22802 4.26348 4.27484 4.32991 4.34276 4.36199 4.41351 4.53840 4.60420 4.64855 4.73725 4.79284 4.84267 4.96532 5.03159 5.03996 5.17052 5.21964 5.23110 5.29232 5.40783 5.59754 5.63059 5.64886 5.81283 6.04554 6.14352 6.31500 6.58811 6.97976 6.98494 7.40223 7.73739 8.65703 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.011052 B = 0.004829 C = 0.004377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2532.832909 B = 5797.298132 C = 6395.756117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.359 6.359 3 C 0.473 3.527 4 O -0.541 6.541 5 C -0.116 4.116 6 C 0.107 3.893 7 N -0.468 5.468 8 C -0.323 4.323 9 H 0.125 0.875 10 C 0.046 3.954 11 N -0.882 5.882 12 Si 0.895 3.105 13 H -0.277 1.277 14 H -0.289 1.289 15 H -0.275 1.275 16 C 0.490 3.510 17 O -0.611 6.611 18 C -0.024 4.024 19 C -0.138 4.138 20 C -0.115 4.115 21 C -0.046 4.046 22 C -0.121 4.121 23 C -0.107 4.107 24 C -0.153 4.153 25 C 0.096 3.904 26 O -0.507 6.507 27 C -0.142 4.142 28 H 0.139 0.861 29 H 0.060 0.940 30 H 0.062 0.938 31 H 0.117 0.883 32 H 0.124 0.876 33 H 0.063 0.937 34 H 0.065 0.935 35 H 0.276 0.724 36 H 0.081 0.919 37 H 0.043 0.957 38 H 0.077 0.923 39 H 0.048 0.952 40 H 0.056 0.944 41 H 0.082 0.918 42 H 0.114 0.886 43 H 0.139 0.861 44 H 0.143 0.857 45 H 0.407 0.593 46 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.365 -7.603 -3.157 8.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.275 6.275 3 C 0.317 3.683 4 O -0.431 6.431 5 C -0.154 4.154 6 C -0.017 4.017 7 N -0.188 5.188 8 C -0.450 4.450 9 H 0.142 0.858 10 C -0.159 4.159 11 N -0.520 5.520 12 Si 0.725 3.275 13 H -0.204 1.204 14 H -0.216 1.216 15 H -0.200 1.200 16 C 0.280 3.720 17 O -0.496 6.496 18 C -0.027 4.027 19 C -0.195 4.195 20 C -0.172 4.172 21 C -0.047 4.047 22 C -0.139 4.139 23 C -0.125 4.125 24 C -0.171 4.171 25 C 0.052 3.948 26 O -0.319 6.319 27 C -0.160 4.160 28 H 0.157 0.843 29 H 0.078 0.922 30 H 0.081 0.919 31 H 0.135 0.865 32 H 0.142 0.858 33 H 0.080 0.920 34 H 0.083 0.917 35 H 0.087 0.913 36 H 0.099 0.901 37 H 0.063 0.937 38 H 0.095 0.905 39 H 0.067 0.933 40 H 0.075 0.925 41 H 0.101 0.899 42 H 0.132 0.868 43 H 0.157 0.843 44 H 0.160 0.840 45 H 0.265 0.735 46 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 1.815 -7.509 -3.990 8.695 hybrid contribution -1.380 1.384 0.812 2.116 sum 0.435 -6.126 -3.178 6.915 Atomic orbital electron populations 1.23611 0.74599 1.06006 1.02504 1.86507 1.25254 1.32078 1.83631 1.23805 0.92102 0.81406 0.70982 1.90640 1.67939 1.37516 1.47044 1.21648 0.87034 0.99533 1.07195 1.21382 0.83293 0.95285 1.01721 1.43855 1.03602 1.65203 1.06146 1.19434 1.07344 1.32237 0.85959 0.85780 1.25511 0.97878 0.97393 0.95082 1.69738 1.43843 1.39946 0.98436 0.86715 0.80962 0.81835 0.78004 1.20447 1.21560 1.20028 1.20829 0.90644 0.77738 0.82740 1.90541 1.70987 1.55575 1.32520 1.19508 0.90359 0.95219 0.97597 1.21960 1.01084 0.94203 1.02238 1.21626 1.01189 1.02073 0.92330 1.19294 0.93346 0.94110 0.97905 1.21361 0.99815 0.94051 0.98695 1.21129 0.95703 0.97441 0.98202 1.21527 0.92906 1.00475 1.02207 1.18386 0.83504 0.93562 0.99345 1.84729 1.19667 1.83753 1.43777 1.21199 0.94730 0.97985 1.02129 0.84334 0.92167 0.91906 0.86493 0.85774 0.91959 0.91671 0.91340 0.90059 0.93738 0.90464 0.93264 0.92462 0.89899 0.86799 0.84334 0.83963 0.73496 0.84333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.55 10.56 113.37 1.20 1.74 16 2 O -0.36 -10.48 10.57 -51.37 -0.54 -11.02 16 3 C 0.47 16.86 7.96 71.24 0.57 17.43 16 4 O -0.54 -22.42 15.73 21.96 0.35 -22.07 16 5 C -0.12 -4.19 5.36 29.85 0.16 -4.03 16 6 C 0.11 4.66 3.51 86.38 0.30 4.97 16 7 N -0.47 -20.65 1.28 -635.54 -0.81 -21.47 16 8 C -0.32 -14.90 5.80 84.04 0.49 -14.41 16 9 H 0.13 5.86 4.29 -2.91 -0.01 5.84 16 10 C 0.05 2.27 5.35 84.93 0.45 2.72 16 11 N -0.88 -45.34 13.96 21.66 0.30 -45.04 16 12 Si 0.90 42.08 24.95 68.60 1.71 43.80 16 13 H -0.28 -13.26 6.55 99.48 0.65 -12.61 16 14 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 15 H -0.28 -13.39 7.11 99.48 0.71 -12.69 16 16 C 0.49 21.17 5.17 87.65 0.45 21.62 16 17 O -0.61 -29.03 15.51 -3.07 -0.05 -29.08 16 18 C -0.02 -0.87 0.59 -53.68 -0.03 -0.90 16 19 C -0.14 -4.79 7.68 71.98 0.55 -4.24 16 20 C -0.11 -3.64 7.69 71.98 0.55 -3.08 16 21 C -0.05 -1.58 3.24 -19.88 -0.06 -1.65 16 22 C -0.12 -4.29 6.96 22.28 0.16 -4.14 16 23 C -0.11 -3.26 10.04 22.25 0.22 -3.04 16 24 C -0.15 -4.26 9.99 22.36 0.22 -4.04 16 25 C 0.10 2.73 6.70 22.51 0.15 2.88 16 26 O -0.51 -11.98 13.50 -92.48 -1.25 -13.23 16 27 C -0.14 -4.28 8.70 22.37 0.19 -4.09 16 28 H 0.14 1.81 8.14 -2.39 -0.02 1.80 16 29 H 0.06 1.31 8.13 -2.39 -0.02 1.29 16 30 H 0.06 1.33 8.13 -2.39 -0.02 1.31 16 31 H 0.12 3.95 7.95 -2.38 -0.02 3.93 16 32 H 0.12 4.30 8.14 -2.39 -0.02 4.28 16 33 H 0.06 2.93 2.78 -2.39 -0.01 2.92 16 34 H 0.06 3.02 7.33 -2.39 -0.02 3.00 16 35 H 0.28 13.61 8.31 -92.71 -0.77 12.84 16 36 H 0.08 2.26 7.41 -2.39 -0.02 2.24 16 37 H 0.04 1.57 8.12 -2.39 -0.02 1.55 16 38 H 0.08 3.10 5.33 -2.39 -0.01 3.09 16 39 H 0.05 1.64 8.01 -2.39 -0.02 1.62 16 40 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 41 H 0.08 2.13 7.64 -2.39 -0.02 2.11 16 42 H 0.11 4.35 4.60 -2.91 -0.01 4.34 16 43 H 0.14 3.60 8.06 -2.91 -0.02 3.58 16 44 H 0.14 3.25 8.06 -2.91 -0.02 3.22 16 45 H 0.41 5.97 9.06 -74.06 -0.67 5.30 16 46 H 0.14 3.64 7.22 -2.91 -0.02 3.62 16 Total: -1.00 -64.22 366.42 5.59 -58.63 By element: Atomic # 1 Polarization: 31.41 SS G_CDS: 0.30 Total: 31.72 kcal Atomic # 6 Polarization: 2.18 SS G_CDS: 5.58 Total: 7.76 kcal Atomic # 7 Polarization: -65.99 SS G_CDS: -0.51 Total: -66.50 kcal Atomic # 8 Polarization: -73.90 SS G_CDS: -1.49 Total: -75.40 kcal Atomic # 14 Polarization: 42.08 SS G_CDS: 1.71 Total: 43.80 kcal Total: -64.22 5.59 -58.63 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001632393914.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.088 kcal (2) G-P(sol) polarization free energy of solvation -64.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds