Wall clock time and date at job start Tue Mar 31 2020 18:52:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34229 * 116.99897 * 2 1 4 4 O 1.20819 * 119.99927 * 0.02562 * 3 2 1 5 5 C 1.50708 * 120.00007 * 179.97438 * 3 2 1 6 6 N 1.46501 * 109.46869 * 179.97438 * 5 3 2 7 7 C 1.46497 * 119.99957 * 289.15347 * 6 5 3 8 8 C 1.53007 * 109.47219 * 274.89611 * 7 6 5 9 9 C 1.53001 * 109.47095 * 177.01580 * 8 7 6 10 10 C 1.53002 * 109.46745 * 297.01640 * 8 7 6 11 11 C 1.34769 * 119.99777 * 109.15556 * 6 5 3 12 12 O 1.21592 * 120.00095 * 178.10340 * 11 6 5 13 13 C 1.47540 * 120.00228 * 358.10516 * 11 6 5 14 14 C 1.39660 * 120.19395 * 327.89869 * 13 11 6 15 15 C 1.37826 * 119.91803 * 179.97438 * 14 13 11 16 16 C 1.38573 * 120.32555 * 0.02562 * 15 14 13 17 17 C 1.38029 * 120.39933 * 0.02562 * 16 15 14 18 18 C 1.38835 * 120.07114 * 359.94039 * 17 16 15 19 19 O 1.35516 * 120.15917 * 180.02562 * 18 17 16 20 20 C 1.34815 * 117.00198 * 354.49969 * 19 18 17 21 21 H 1.07999 * 120.00198 * 5.06016 * 20 19 18 22 22 C 1.38699 * 119.99969 * 185.06541 * 20 19 18 23 23 N 1.31518 * 120.00007 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 119.99923 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.47134 * 0.02562 * 24 22 20 26 26 H 1.48501 * 109.46925 * 119.99875 * 24 22 20 27 27 H 1.48497 * 109.47026 * 239.99732 * 24 22 20 28 28 H 1.09003 * 109.46649 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.47118 * 300.00086 * 1 2 3 30 30 H 1.08991 * 109.47160 * 60.00437 * 1 2 3 31 31 H 1.09000 * 109.46376 * 60.00057 * 5 3 2 32 32 H 1.08996 * 109.47055 * 299.99942 * 5 3 2 33 33 H 1.08996 * 109.47710 * 34.89522 * 7 6 5 34 34 H 1.08998 * 109.47197 * 154.89855 * 7 6 5 35 35 H 1.08998 * 109.47160 * 57.01458 * 8 7 6 36 36 H 1.09005 * 109.46690 * 60.00592 * 9 8 7 37 37 H 1.08999 * 109.47042 * 179.97438 * 9 8 7 38 38 H 1.08995 * 109.47093 * 300.00175 * 9 8 7 39 39 H 1.08999 * 109.46696 * 65.16034 * 10 8 7 40 40 H 1.09001 * 109.46832 * 185.15135 * 10 8 7 41 41 H 1.08991 * 109.47483 * 305.15487 * 10 8 7 42 42 H 1.08000 * 120.04251 * 0.28011 * 14 13 11 43 43 H 1.08003 * 119.84046 * 180.02562 * 15 14 13 44 44 H 1.08000 * 119.80232 * 179.97438 * 16 15 14 45 45 H 1.07997 * 119.96271 * 179.97438 * 17 16 15 46 46 H 0.97006 * 120.00054 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5664 1.2749 0.0006 6 7 3.9817 2.6798 -0.0002 7 6 3.7906 3.4995 -1.1992 8 6 4.9768 3.3031 -2.1456 9 6 4.7421 4.1009 -3.4299 10 6 6.2572 3.7939 -1.4670 11 6 4.5395 3.2181 1.1023 12 8 4.9157 4.3743 1.0906 13 6 4.6937 2.4046 2.3234 14 6 3.7611 1.4104 2.6275 15 6 3.9110 0.6534 3.7694 16 6 4.9832 0.8737 4.6192 17 6 5.9121 1.8534 4.3321 18 6 5.7776 2.6252 3.1859 19 8 6.6889 3.5872 2.9020 20 6 7.6391 3.8228 3.8288 21 1 7.6999 3.2014 4.7101 22 6 8.5388 4.8633 3.6507 23 7 8.4651 5.6198 2.5773 24 14 9.8550 5.1902 4.9353 25 1 9.7251 4.2051 6.0388 26 1 11.1971 5.0613 4.3127 27 1 9.6896 6.5637 5.4750 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5137 -0.8899 31 1 3.9563 0.7806 -0.8892 32 1 3.9557 0.7810 0.8908 33 1 2.8713 3.1993 -1.7020 34 1 3.7229 4.5495 -0.9146 35 1 5.0767 2.2452 -2.3882 36 1 4.6422 5.1589 -3.1871 37 1 5.5873 3.9614 -4.1038 38 1 3.8299 3.7513 -3.9132 39 1 6.4739 3.1660 -0.6028 40 1 7.0862 3.7394 -2.1726 41 1 6.1238 4.8257 -1.1423 42 1 2.9262 1.2317 1.9661 43 1 3.1893 -0.1153 4.0032 44 1 5.0922 0.2759 5.5120 45 1 6.7448 2.0194 4.9995 46 1 9.0946 6.3473 2.4526 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001645602440.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:52:45 Heat of formation + Delta-G solvation = -97.928499 kcal Electronic energy + Delta-G solvation = -30493.621075 eV Core-core repulsion = 26350.628092 eV Total energy + Delta-G solvation = -4142.992984 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.91567 -39.69634 -38.48117 -36.60371 -36.51929 -35.81007 -34.08717 -32.37914 -30.67062 -29.37360 -28.89284 -27.06209 -26.75144 -26.01397 -25.34973 -22.69392 -21.69903 -21.44367 -20.07131 -19.10832 -18.20715 -17.78032 -17.26091 -16.82620 -16.50782 -16.17821 -15.69493 -14.86529 -14.80280 -14.43655 -14.28705 -14.10657 -14.05647 -13.67463 -13.47682 -13.42552 -12.98235 -12.84667 -12.52941 -12.34219 -12.19902 -12.07205 -11.92818 -11.71869 -11.51871 -11.33254 -11.12899 -10.97697 -10.94245 -10.89261 -10.67937 -10.62343 -10.56719 -10.45810 -10.36735 -9.61042 -8.97835 -8.90660 -8.37224 -8.28553 -7.37653 -6.48499 -4.08337 1.64551 2.07745 2.24666 2.48281 3.09737 3.11283 3.16799 3.32498 3.65119 3.90551 4.46951 4.70058 4.93758 4.95276 4.95894 5.01344 5.05631 5.10864 5.17830 5.24502 5.33434 5.37169 5.38303 5.42345 5.60740 5.71375 5.82317 5.92252 5.93739 6.05556 6.14839 6.21360 6.24298 6.27116 6.41101 6.48001 6.56958 6.61272 6.82873 6.88472 6.97434 7.00065 7.18043 7.24484 7.61234 7.63706 7.79279 7.92014 8.89964 8.93609 9.60913 10.65681 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.011834 B = 0.004423 C = 0.003357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2365.420967 B = 6329.117078 C = 8339.204600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.360 6.360 3 C 0.438 3.562 4 O -0.492 6.492 5 C 0.097 3.903 6 N -0.602 5.602 7 C 0.126 3.874 8 C -0.112 4.112 9 C -0.142 4.142 10 C -0.137 4.137 11 C 0.570 3.430 12 O -0.488 6.488 13 C -0.226 4.226 14 C -0.058 4.058 15 C -0.224 4.224 16 C -0.051 4.051 17 C -0.233 4.233 18 C 0.191 3.809 19 O -0.133 6.133 20 C -0.401 4.401 21 H 0.095 0.905 22 C 0.046 3.954 23 N -0.834 5.834 24 Si 0.941 3.059 25 H -0.265 1.265 26 H -0.275 1.275 27 H -0.274 1.274 28 H 0.100 0.900 29 H 0.063 0.937 30 H 0.061 0.939 31 H 0.110 0.890 32 H 0.150 0.850 33 H 0.068 0.932 34 H 0.088 0.912 35 H 0.064 0.936 36 H 0.057 0.943 37 H 0.055 0.945 38 H 0.050 0.950 39 H 0.057 0.943 40 H 0.043 0.957 41 H 0.065 0.935 42 H 0.112 0.888 43 H 0.111 0.889 44 H 0.112 0.888 45 H 0.133 0.867 46 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.009 -11.783 -6.533 16.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.277 6.277 3 C 0.278 3.722 4 O -0.378 6.378 5 C -0.029 4.029 6 N -0.337 5.337 7 C 0.004 3.996 8 C -0.131 4.131 9 C -0.200 4.200 10 C -0.194 4.194 11 C 0.360 3.640 12 O -0.361 6.361 13 C -0.230 4.230 14 C -0.076 4.076 15 C -0.243 4.243 16 C -0.069 4.069 17 C -0.252 4.252 18 C 0.132 3.868 19 O -0.032 6.032 20 C -0.477 4.477 21 H 0.112 0.888 22 C -0.162 4.162 23 N -0.465 5.465 24 Si 0.765 3.235 25 H -0.190 1.190 26 H -0.200 1.200 27 H -0.200 1.200 28 H 0.119 0.881 29 H 0.081 0.919 30 H 0.079 0.921 31 H 0.128 0.872 32 H 0.167 0.833 33 H 0.086 0.914 34 H 0.107 0.893 35 H 0.082 0.918 36 H 0.076 0.924 37 H 0.074 0.926 38 H 0.069 0.931 39 H 0.076 0.924 40 H 0.062 0.938 41 H 0.084 0.916 42 H 0.130 0.870 43 H 0.129 0.871 44 H 0.130 0.870 45 H 0.151 0.849 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -9.829 -10.391 -6.839 15.854 hybrid contribution 0.233 0.014 0.683 0.721 sum -9.596 -10.376 -6.156 15.416 Atomic orbital electron populations 1.23246 0.76555 1.03546 1.02543 1.86526 1.23307 1.33537 1.84291 1.24730 0.93054 0.81605 0.72801 1.90693 1.66851 1.36256 1.44005 1.21688 0.86398 0.86503 1.08294 1.47496 1.62582 1.09622 1.14026 1.21496 0.96535 0.97136 0.84465 1.21534 0.96693 0.99738 0.95169 1.21757 1.01021 1.00576 0.96668 1.21744 0.95044 1.02898 0.99758 1.18191 0.76737 0.87035 0.82001 1.90883 1.46073 1.16555 1.82553 1.18766 1.00084 1.04802 0.99389 1.21009 0.96527 0.93514 0.96557 1.20483 1.01469 1.04723 0.97634 1.20909 0.93156 0.95374 0.97480 1.21180 1.03255 1.00548 1.00224 1.19155 0.87947 0.88539 0.91177 1.84067 1.33182 1.44479 1.41481 1.21496 1.08174 1.16117 1.01926 0.88766 1.25365 0.98305 0.94802 0.97741 1.70109 1.34763 1.16443 1.25213 0.85661 0.79481 0.78907 0.79456 1.18963 1.20030 1.19988 0.88135 0.91861 0.92055 0.87241 0.83320 0.91362 0.89334 0.91755 0.92391 0.92591 0.93125 0.92381 0.93780 0.91624 0.87010 0.87056 0.86977 0.84905 0.91866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.30 10.56 101.05 1.07 1.37 16 2 O -0.36 -4.08 10.57 -39.26 -0.41 -4.49 16 3 C 0.44 5.95 5.99 36.01 0.22 6.17 16 4 O -0.49 -8.14 15.09 -18.75 -0.28 -8.42 16 5 C 0.10 1.31 5.55 -5.19 -0.03 1.28 16 6 N -0.60 -10.43 1.97 -176.29 -0.35 -10.78 16 7 C 0.13 2.00 4.57 -4.04 -0.02 1.99 16 8 C -0.11 -1.60 3.14 -90.61 -0.28 -1.88 16 9 C -0.14 -1.70 9.19 37.16 0.34 -1.36 16 10 C -0.14 -2.46 7.94 37.16 0.29 -2.17 16 11 C 0.57 12.57 6.04 -12.47 -0.08 12.49 16 12 O -0.49 -12.93 14.01 -13.34 -0.19 -13.12 16 13 C -0.23 -4.88 5.44 -104.81 -0.57 -5.45 16 14 C -0.06 -1.02 7.37 -39.20 -0.29 -1.30 16 15 C -0.22 -3.63 10.02 -39.61 -0.40 -4.03 16 16 C -0.05 -0.87 10.03 -39.53 -0.40 -1.26 16 17 C -0.23 -4.85 9.16 -39.44 -0.36 -5.21 16 18 C 0.19 4.62 6.63 -38.60 -0.26 4.36 16 19 O -0.13 -3.81 8.32 -17.82 -0.15 -3.96 16 20 C -0.40 -11.08 9.49 30.90 0.29 -10.79 16 21 H 0.10 2.37 5.21 -52.49 -0.27 2.09 16 22 C 0.05 1.24 5.49 -17.52 -0.10 1.15 16 23 N -0.83 -24.55 13.67 55.48 0.76 -23.79 16 24 Si 0.94 20.24 29.55 -169.99 -5.02 15.21 16 25 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 26 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 27 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 28 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.06 0.57 8.13 -51.93 -0.42 0.14 16 30 H 0.06 0.51 8.13 -51.93 -0.42 0.09 16 31 H 0.11 1.14 8.05 -51.93 -0.42 0.72 16 32 H 0.15 2.04 4.10 -51.93 -0.21 1.83 16 33 H 0.07 0.97 7.15 -51.93 -0.37 0.60 16 34 H 0.09 1.62 7.30 -51.93 -0.38 1.24 16 35 H 0.06 0.82 8.05 -51.93 -0.42 0.41 16 36 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 38 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.06 1.21 6.87 -51.93 -0.36 0.85 16 40 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.06 1.35 7.79 -51.93 -0.40 0.94 16 42 H 0.11 1.75 4.03 -52.49 -0.21 1.54 16 43 H 0.11 1.46 8.06 -52.48 -0.42 1.04 16 44 H 0.11 1.55 8.06 -52.49 -0.42 1.13 16 45 H 0.13 2.73 5.64 -52.49 -0.30 2.43 16 46 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 376.69 15.07 5.68 5.68 Total: -1.00 -34.32 376.69 -6.81 -41.13 By element: Atomic # 1 Polarization: 13.47 SS G_CDS: -6.28 Total: 7.19 kcal Atomic # 6 Polarization: -4.08 SS G_CDS: -0.56 Total: -4.64 kcal Atomic # 7 Polarization: -34.98 SS G_CDS: 0.41 Total: -34.56 kcal Atomic # 8 Polarization: -28.96 SS G_CDS: -1.03 Total: -29.99 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -5.02 Total: 15.21 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -34.32 -6.81 -41.13 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001645602440.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.801 kcal (2) G-P(sol) polarization free energy of solvation -34.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.127 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds