Wall clock time and date at job start Tue Mar 31 2020 18:52:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34229 * 116.99897 * 2 1 4 4 O 1.20819 * 119.99927 * 0.02562 * 3 2 1 5 5 C 1.50708 * 120.00007 * 179.97438 * 3 2 1 6 6 N 1.46501 * 109.46869 * 179.97438 * 5 3 2 7 7 C 1.46497 * 119.99957 * 289.15347 * 6 5 3 8 8 C 1.53007 * 109.47219 * 274.89611 * 7 6 5 9 9 C 1.53001 * 109.47095 * 177.01580 * 8 7 6 10 10 C 1.53002 * 109.46745 * 297.01640 * 8 7 6 11 11 C 1.34769 * 119.99777 * 109.15556 * 6 5 3 12 12 O 1.21592 * 120.00095 * 178.10340 * 11 6 5 13 13 C 1.47540 * 120.00228 * 358.10516 * 11 6 5 14 14 C 1.39660 * 120.19395 * 327.89869 * 13 11 6 15 15 C 1.37826 * 119.91803 * 179.97438 * 14 13 11 16 16 C 1.38573 * 120.32555 * 0.02562 * 15 14 13 17 17 C 1.38029 * 120.39933 * 0.02562 * 16 15 14 18 18 C 1.38835 * 120.07114 * 359.94039 * 17 16 15 19 19 O 1.35516 * 120.15917 * 180.02562 * 18 17 16 20 20 C 1.34815 * 117.00198 * 354.49969 * 19 18 17 21 21 H 1.07999 * 120.00198 * 5.06016 * 20 19 18 22 22 C 1.38699 * 119.99969 * 185.06541 * 20 19 18 23 23 N 1.31518 * 120.00007 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 119.99923 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.47134 * 0.02562 * 24 22 20 26 26 H 1.48501 * 109.46925 * 119.99875 * 24 22 20 27 27 H 1.48497 * 109.47026 * 239.99732 * 24 22 20 28 28 H 1.09003 * 109.46649 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.47118 * 300.00086 * 1 2 3 30 30 H 1.08991 * 109.47160 * 60.00437 * 1 2 3 31 31 H 1.09000 * 109.46376 * 60.00057 * 5 3 2 32 32 H 1.08996 * 109.47055 * 299.99942 * 5 3 2 33 33 H 1.08996 * 109.47710 * 34.89522 * 7 6 5 34 34 H 1.08998 * 109.47197 * 154.89855 * 7 6 5 35 35 H 1.08998 * 109.47160 * 57.01458 * 8 7 6 36 36 H 1.09005 * 109.46690 * 60.00592 * 9 8 7 37 37 H 1.08999 * 109.47042 * 179.97438 * 9 8 7 38 38 H 1.08995 * 109.47093 * 300.00175 * 9 8 7 39 39 H 1.08999 * 109.46696 * 65.16034 * 10 8 7 40 40 H 1.09001 * 109.46832 * 185.15135 * 10 8 7 41 41 H 1.08991 * 109.47483 * 305.15487 * 10 8 7 42 42 H 1.08000 * 120.04251 * 0.28011 * 14 13 11 43 43 H 1.08003 * 119.84046 * 180.02562 * 15 14 13 44 44 H 1.08000 * 119.80232 * 179.97438 * 16 15 14 45 45 H 1.07997 * 119.96271 * 179.97438 * 17 16 15 46 46 H 0.97006 * 120.00054 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5664 1.2749 0.0006 6 7 3.9817 2.6798 -0.0002 7 6 3.7906 3.4995 -1.1992 8 6 4.9768 3.3031 -2.1456 9 6 4.7421 4.1009 -3.4299 10 6 6.2572 3.7939 -1.4670 11 6 4.5395 3.2181 1.1023 12 8 4.9157 4.3743 1.0906 13 6 4.6937 2.4046 2.3234 14 6 3.7611 1.4104 2.6275 15 6 3.9110 0.6534 3.7694 16 6 4.9832 0.8737 4.6192 17 6 5.9121 1.8534 4.3321 18 6 5.7776 2.6252 3.1859 19 8 6.6889 3.5872 2.9020 20 6 7.6391 3.8228 3.8288 21 1 7.6999 3.2014 4.7101 22 6 8.5388 4.8633 3.6507 23 7 8.4651 5.6198 2.5773 24 14 9.8550 5.1902 4.9353 25 1 9.7251 4.2051 6.0388 26 1 11.1971 5.0613 4.3127 27 1 9.6896 6.5637 5.4750 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5137 -0.8899 31 1 3.9563 0.7806 -0.8892 32 1 3.9557 0.7810 0.8908 33 1 2.8713 3.1993 -1.7020 34 1 3.7229 4.5495 -0.9146 35 1 5.0767 2.2452 -2.3882 36 1 4.6422 5.1589 -3.1871 37 1 5.5873 3.9614 -4.1038 38 1 3.8299 3.7513 -3.9132 39 1 6.4739 3.1660 -0.6028 40 1 7.0862 3.7394 -2.1726 41 1 6.1238 4.8257 -1.1423 42 1 2.9262 1.2317 1.9661 43 1 3.1893 -0.1153 4.0032 44 1 5.0922 0.2759 5.5120 45 1 6.7448 2.0194 4.9995 46 1 9.0946 6.3473 2.4526 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001645602440.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:52:44 Heat of formation + Delta-G solvation = -119.289599 kcal Electronic energy + Delta-G solvation = -30494.547362 eV Core-core repulsion = 26350.628092 eV Total energy + Delta-G solvation = -4143.919270 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.18926 -41.10968 -40.09387 -38.20178 -37.77751 -37.18140 -35.45553 -34.32966 -32.18141 -30.81687 -30.19882 -28.12256 -28.00221 -27.51573 -27.07963 -24.19717 -23.31368 -22.56021 -21.43786 -20.51934 -19.99245 -18.95336 -18.74234 -18.20821 -17.74172 -17.44215 -17.10958 -16.41544 -16.35049 -15.94651 -15.72375 -15.57391 -15.46470 -15.37956 -14.73989 -14.49864 -14.43006 -14.29148 -14.15772 -13.68347 -13.58910 -13.34268 -13.14399 -12.99069 -12.92116 -12.82981 -12.67149 -12.51656 -12.29530 -12.16817 -12.08013 -11.90789 -11.81036 -11.75825 -11.63369 -11.42802 -10.84472 -10.67922 -9.88521 -9.75064 -9.08309 -8.45265 -6.15790 0.07628 0.62824 1.03522 1.33102 1.41943 1.42982 1.52434 1.85825 2.14755 2.20404 2.81209 3.13058 3.37427 3.52035 3.79369 3.86648 3.89456 3.96604 3.98025 4.12762 4.23610 4.30412 4.35743 4.38092 4.45110 4.46057 4.55998 4.63535 4.75066 4.76441 4.82741 4.88202 4.94322 5.00794 5.05665 5.08990 5.16009 5.28328 5.32427 5.41723 5.44781 5.50157 5.58975 5.64545 5.94326 6.09171 6.25649 6.65832 6.94768 7.28668 7.76804 8.75265 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.011834 B = 0.004423 C = 0.003357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2365.420967 B = 6329.117078 C = 8339.204600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.352 6.352 3 C 0.448 3.552 4 O -0.526 6.526 5 C 0.090 3.910 6 N -0.596 5.596 7 C 0.127 3.873 8 C -0.101 4.101 9 C -0.137 4.137 10 C -0.127 4.127 11 C 0.562 3.438 12 O -0.552 6.552 13 C -0.241 4.241 14 C -0.053 4.053 15 C -0.192 4.192 16 C -0.037 4.037 17 C -0.247 4.247 18 C 0.154 3.846 19 O -0.195 6.195 20 C -0.423 4.423 21 H 0.109 0.891 22 C -0.020 4.020 23 N -0.904 5.904 24 Si 1.020 2.980 25 H -0.244 1.244 26 H -0.268 1.268 27 H -0.273 1.273 28 H 0.137 0.863 29 H 0.058 0.942 30 H 0.062 0.938 31 H 0.151 0.849 32 H 0.151 0.849 33 H 0.094 0.906 34 H 0.052 0.948 35 H 0.093 0.907 36 H 0.043 0.957 37 H 0.069 0.931 38 H 0.077 0.923 39 H 0.020 0.980 40 H 0.060 0.940 41 H 0.024 0.976 42 H 0.136 0.864 43 H 0.165 0.835 44 H 0.160 0.840 45 H 0.128 0.872 46 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.361 -16.465 -6.169 21.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.267 6.267 3 C 0.290 3.710 4 O -0.415 6.415 5 C -0.034 4.034 6 N -0.329 5.329 7 C 0.005 3.995 8 C -0.121 4.121 9 C -0.195 4.195 10 C -0.185 4.185 11 C 0.353 3.647 12 O -0.429 6.429 13 C -0.246 4.246 14 C -0.071 4.071 15 C -0.210 4.210 16 C -0.055 4.055 17 C -0.266 4.266 18 C 0.100 3.900 19 O -0.098 6.098 20 C -0.499 4.499 21 H 0.126 0.874 22 C -0.219 4.219 23 N -0.540 5.540 24 Si 0.839 3.161 25 H -0.167 1.167 26 H -0.193 1.193 27 H -0.198 1.198 28 H 0.155 0.845 29 H 0.077 0.923 30 H 0.081 0.919 31 H 0.168 0.832 32 H 0.168 0.832 33 H 0.113 0.887 34 H 0.071 0.929 35 H 0.112 0.888 36 H 0.062 0.938 37 H 0.088 0.912 38 H 0.096 0.904 39 H 0.039 0.961 40 H 0.079 0.921 41 H 0.043 0.957 42 H 0.154 0.846 43 H 0.182 0.818 44 H 0.177 0.823 45 H 0.146 0.854 46 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -12.256 -15.197 -6.483 20.572 hybrid contribution 0.560 1.097 0.547 1.348 sum -11.696 -14.100 -5.936 19.257 Atomic orbital electron populations 1.23591 0.74609 1.05938 1.02458 1.86513 1.25019 1.31658 1.83515 1.24462 0.92692 0.81825 0.72043 1.90706 1.67479 1.37543 1.45738 1.21949 0.87035 0.84052 1.10388 1.47428 1.61155 1.11333 1.12961 1.21574 0.98400 0.95261 0.84269 1.21502 0.93514 1.01648 0.95398 1.21727 1.02965 0.99363 0.95439 1.21625 0.98138 0.99743 0.98976 1.18491 0.76400 0.86417 0.83372 1.90856 1.48899 1.19308 1.83808 1.19131 1.00445 1.05867 0.99159 1.21310 0.95918 0.92260 0.97662 1.21155 1.00926 1.03649 0.95249 1.21436 0.91561 0.93690 0.98796 1.21350 1.04545 1.01524 0.99217 1.19878 0.88479 0.88567 0.93121 1.84076 1.35232 1.47526 1.42944 1.22029 1.08557 1.16753 1.02552 0.87383 1.26697 1.00860 0.94276 1.00079 1.70302 1.37021 1.18243 1.28449 0.84529 0.75932 0.78953 0.76732 1.16700 1.19271 1.19816 0.84491 0.92318 0.91917 0.83156 0.83217 0.88737 0.92919 0.88836 0.93792 0.91167 0.90412 0.96083 0.92132 0.95679 0.84613 0.81773 0.82272 0.85404 0.92088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 10.56 113.37 1.20 1.55 16 2 O -0.35 -6.40 10.57 -51.41 -0.54 -6.95 16 3 C 0.45 10.78 5.99 71.24 0.43 11.20 16 4 O -0.53 -16.39 15.09 21.98 0.33 -16.06 16 5 C 0.09 2.20 5.55 85.64 0.48 2.67 16 6 N -0.60 -20.88 1.97 -829.91 -1.63 -22.52 16 7 C 0.13 4.11 4.57 86.38 0.39 4.51 16 8 C -0.10 -2.87 3.14 -10.79 -0.03 -2.91 16 9 C -0.14 -3.10 9.19 71.98 0.66 -2.44 16 10 C -0.13 -4.95 7.94 71.98 0.57 -4.38 16 11 C 0.56 26.35 6.04 86.70 0.52 26.87 16 12 O -0.55 -32.35 14.01 13.81 0.19 -32.15 16 13 C -0.24 -10.68 5.44 -19.99 -0.11 -10.79 16 14 C -0.05 -1.73 7.37 22.52 0.17 -1.57 16 15 C -0.19 -5.17 10.02 22.25 0.22 -4.95 16 16 C -0.04 -1.10 10.03 22.30 0.22 -0.88 16 17 C -0.25 -10.24 9.16 22.36 0.20 -10.03 16 18 C 0.15 7.83 6.63 22.91 0.15 7.98 16 19 O -0.19 -12.14 8.32 -2.22 -0.02 -12.16 16 20 C -0.42 -25.10 9.49 67.93 0.64 -24.46 16 21 H 0.11 5.73 5.21 -2.91 -0.02 5.71 16 22 C -0.02 -1.16 5.49 84.85 0.47 -0.69 16 23 N -0.90 -58.38 13.67 21.62 0.30 -58.09 16 24 Si 1.02 43.80 29.55 68.60 2.03 45.83 16 25 H -0.24 -9.42 7.11 99.48 0.71 -8.71 16 26 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 27 H -0.27 -11.45 7.11 99.48 0.71 -10.75 16 28 H 0.14 0.80 8.14 -2.39 -0.02 0.78 16 29 H 0.06 0.85 8.13 -2.39 -0.02 0.83 16 30 H 0.06 0.83 8.13 -2.39 -0.02 0.81 16 31 H 0.15 2.50 8.05 -2.39 -0.02 2.48 16 32 H 0.15 3.67 4.10 -2.39 -0.01 3.66 16 33 H 0.09 2.56 7.15 -2.39 -0.02 2.55 16 34 H 0.05 2.09 7.30 -2.39 -0.02 2.08 16 35 H 0.09 2.15 8.05 -2.39 -0.02 2.13 16 36 H 0.04 1.11 8.14 -2.38 -0.02 1.09 16 37 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 38 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 39 H 0.02 0.93 6.87 -2.39 -0.02 0.92 16 40 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 41 H 0.02 1.14 7.79 -2.39 -0.02 1.12 16 42 H 0.14 3.77 4.03 -2.91 -0.01 3.76 16 43 H 0.16 2.91 8.06 -2.91 -0.02 2.89 16 44 H 0.16 3.37 8.06 -2.91 -0.02 3.35 16 45 H 0.13 5.33 5.64 -2.91 -0.02 5.31 16 46 H 0.27 16.01 8.31 -92.70 -0.77 15.24 16 Total: -1.00 -88.53 376.69 7.85 -80.68 By element: Atomic # 1 Polarization: 28.72 SS G_CDS: 1.01 Total: 29.72 kcal Atomic # 6 Polarization: -14.50 SS G_CDS: 6.19 Total: -8.31 kcal Atomic # 7 Polarization: -79.27 SS G_CDS: -1.34 Total: -80.60 kcal Atomic # 8 Polarization: -67.28 SS G_CDS: -0.04 Total: -67.32 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.83 kcal Total: -88.53 7.85 -80.68 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001645602440.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.609 kcal (2) G-P(sol) polarization free energy of solvation -88.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.681 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds