Wall clock time and date at job start Tue Mar 31 2020 18:48:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53009 * 109.46869 * 2 1 4 4 O 1.42899 * 109.47429 * 239.99955 * 2 1 3 5 5 C 1.52998 * 109.47058 * 119.99713 * 2 1 3 6 6 H 1.08998 * 109.46750 * 65.00016 * 5 2 1 7 7 O 1.42903 * 109.47176 * 305.00594 * 5 2 1 8 8 C 1.35894 * 117.00359 * 94.35413 * 7 5 2 9 9 C 1.38735 * 120.05836 * 181.67896 * 8 7 5 10 10 C 1.38144 * 119.94374 * 179.74892 * 9 8 7 11 11 C 1.38263 * 120.05435 * 0.50709 * 10 9 8 12 12 C 1.38266 * 120.11397 * 359.76831 * 11 10 9 13 13 C 1.38142 * 120.05788 * 359.97438 * 12 11 10 14 14 C 1.50702 * 109.47128 * 185.00313 * 5 2 1 15 15 O 1.21279 * 119.99866 * 119.72515 * 14 5 2 16 16 N 1.34780 * 119.99720 * 299.99848 * 14 5 2 17 17 C 1.47062 * 136.05973 * 359.36071 * 16 14 5 18 18 C 1.53236 * 88.08232 * 207.20023 * 17 16 14 19 19 O 1.42902 * 114.19871 * 87.72583 * 18 17 16 20 20 C 1.50700 * 114.32561 * 220.46778 * 18 17 16 21 21 H 1.07999 * 119.99746 * 93.75627 * 20 18 17 22 22 C 1.37878 * 120.00306 * 273.75953 * 20 18 17 23 23 N 1.31521 * 119.99632 * 359.97438 * 22 20 18 24 24 Si 1.86794 * 120.00300 * 180.02562 * 22 20 18 25 25 H 1.48503 * 109.47236 * 359.97438 * 24 22 20 26 26 H 1.48501 * 109.47083 * 119.99838 * 24 22 20 27 27 H 1.48501 * 109.47272 * 240.00032 * 24 22 20 28 28 C 1.47060 * 136.05378 * 179.72405 * 16 14 5 29 29 H 1.09001 * 109.47393 * 300.00378 * 1 2 3 30 30 H 1.09005 * 109.46767 * 60.00255 * 1 2 3 31 31 H 1.08998 * 109.47043 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.46787 * 179.97438 * 3 2 1 33 33 H 1.09001 * 109.46522 * 299.99594 * 3 2 1 34 34 H 1.08998 * 109.46697 * 59.99569 * 3 2 1 35 35 H 0.96702 * 114.00003 * 299.99915 * 4 2 1 36 36 H 1.08003 * 120.02414 * 359.97438 * 9 8 7 37 37 H 1.08002 * 119.97242 * 180.27492 * 10 9 8 38 38 H 1.08001 * 119.94267 * 179.75163 * 11 10 9 39 39 H 1.08002 * 119.97273 * 179.97438 * 12 11 10 40 40 H 1.07993 * 120.03116 * 179.97438 * 13 12 11 41 41 H 1.09004 * 113.46448 * 321.93133 * 17 16 14 42 42 H 1.08999 * 113.46942 * 92.37234 * 17 16 14 43 43 H 0.96702 * 113.99979 * 86.30191 * 19 18 17 44 44 H 0.96996 * 119.99848 * 179.97438 * 23 22 20 45 45 H 1.09002 * 113.47124 * 267.62574 * 28 16 14 46 46 H 1.09001 * 113.47464 * 38.00566 * 28 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 8 2.0064 -0.6736 -1.1667 5 6 2.0400 -0.7212 1.2493 6 1 1.7516 -1.7714 1.2056 7 8 1.4701 -0.1188 2.4131 8 6 0.3371 -0.6829 2.9079 9 6 -0.2889 -0.1285 4.0149 10 6 -1.4434 -0.7009 4.5128 11 6 -1.9692 -1.8315 3.9153 12 6 -1.3440 -2.3893 2.8154 13 6 -0.1922 -1.8177 2.3104 14 6 3.5419 -0.6148 1.3128 15 8 4.0718 -0.0717 2.2589 16 7 4.2959 -1.1183 0.3155 17 6 4.0440 -1.8272 -0.9481 18 6 5.4290 -2.4673 -0.8054 19 8 5.4394 -3.6775 -0.0455 20 6 6.2027 -2.5668 -2.0947 21 1 6.8989 -1.7877 -2.3682 22 6 6.0219 -3.6523 -2.9253 23 7 5.1745 -4.6013 -2.5920 24 14 6.9815 -3.7760 -4.5231 25 1 7.8627 -2.5890 -4.6645 26 1 7.8093 -5.0088 -4.5092 27 1 6.0351 -3.8281 -5.6662 28 6 5.7328 -1.2063 0.0154 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0276 -0.0005 32 1 3.1300 1.4426 0.0005 33 1 1.6766 1.9563 -0.8901 34 1 1.6765 1.9564 0.8899 35 1 1.7211 -1.5952 -1.2329 36 1 0.1240 0.7519 4.4847 37 1 -1.9336 -0.2671 5.3719 38 1 -2.8696 -2.2798 4.3085 39 1 -1.7564 -3.2727 2.3507 40 1 0.2959 -2.2539 1.4516 41 1 3.2269 -2.5460 -0.8871 42 1 3.9591 -1.1636 -1.8086 43 1 5.2476 -4.4700 -0.5654 44 1 5.0470 -5.3648 -3.1765 45 1 6.1024 -0.3756 -0.5860 46 1 6.3491 -1.3971 0.8940 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001645982933.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:48:32 Heat of formation + Delta-G solvation = -85.998242 kcal Electronic energy + Delta-G solvation = -30815.608282 eV Core-core repulsion = 26673.132633 eV Total energy + Delta-G solvation = -4142.475649 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.05024 -39.53663 -38.19255 -37.23001 -36.70179 -33.98497 -32.42334 -32.19599 -31.12279 -30.22117 -29.25524 -27.38655 -27.21666 -25.17665 -25.00219 -22.82715 -22.34130 -20.96135 -20.09557 -18.54034 -18.29185 -17.77072 -17.23123 -16.34448 -16.13724 -15.75933 -15.65007 -15.24098 -14.90505 -14.58575 -14.26545 -14.24790 -14.14022 -13.68890 -13.54121 -13.07268 -12.78248 -12.74104 -12.58332 -12.36325 -12.16077 -12.04742 -11.95660 -11.87602 -11.72287 -11.67411 -11.49244 -11.10120 -11.03523 -10.88718 -10.61072 -10.48818 -10.22945 -10.10803 -9.58259 -9.13190 -9.10601 -8.77921 -8.34395 -8.23811 -7.80183 -6.41799 -4.50482 1.19430 1.32077 2.69719 3.06678 3.12922 3.22785 3.26875 3.63130 3.75390 4.17539 4.23274 4.43625 4.60310 4.66929 4.72499 4.81047 4.84744 4.97763 5.08585 5.13698 5.23615 5.34285 5.49285 5.55023 5.60505 5.69267 5.81872 5.86444 5.91286 5.92945 6.03437 6.18349 6.20669 6.25989 6.28591 6.37442 6.38823 6.55864 6.62874 6.68506 6.71684 7.14381 7.30562 7.60491 7.62674 7.80607 8.45962 8.53113 8.70262 9.20327 9.47443 10.65110 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.018274 B = 0.003349 C = 0.003273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1531.896186 B = 8359.283640 C = 8553.692785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.118 3.882 3 C -0.135 4.135 4 O -0.535 6.535 5 C 0.046 3.954 6 H 0.098 0.902 7 O -0.275 6.275 8 C 0.135 3.865 9 C -0.153 4.153 10 C -0.081 4.081 11 C -0.164 4.164 12 C -0.078 4.078 13 C -0.212 4.212 14 C 0.542 3.458 15 O -0.547 6.547 16 N -0.622 5.622 17 C 0.098 3.902 18 C 0.230 3.770 19 O -0.574 6.574 20 C -0.528 4.528 21 H 0.072 0.928 22 C 0.072 3.928 23 N -0.900 5.900 24 Si 0.908 3.092 25 H -0.270 1.270 26 H -0.281 1.281 27 H -0.281 1.281 28 C 0.110 3.890 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.062 0.938 32 H 0.065 0.935 33 H 0.066 0.934 34 H 0.074 0.926 35 H 0.378 0.622 36 H 0.131 0.869 37 H 0.127 0.873 38 H 0.122 0.878 39 H 0.124 0.876 40 H 0.129 0.871 41 H 0.053 0.947 42 H 0.097 0.903 43 H 0.393 0.607 44 H 0.272 0.728 45 H 0.086 0.914 46 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.527 5.031 5.137 16.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.076 3.924 3 C -0.192 4.192 4 O -0.343 6.343 5 C -0.014 4.014 6 H 0.116 0.884 7 O -0.187 6.187 8 C 0.090 3.910 9 C -0.172 4.172 10 C -0.099 4.099 11 C -0.182 4.182 12 C -0.096 4.096 13 C -0.231 4.231 14 C 0.329 3.671 15 O -0.426 6.426 16 N -0.356 5.356 17 C -0.025 4.025 18 C 0.188 3.812 19 O -0.387 6.387 20 C -0.567 4.567 21 H 0.090 0.910 22 C -0.130 4.130 23 N -0.541 5.541 24 Si 0.735 3.265 25 H -0.194 1.194 26 H -0.207 1.207 27 H -0.207 1.207 28 C -0.012 4.012 29 H 0.088 0.912 30 H 0.089 0.911 31 H 0.081 0.919 32 H 0.084 0.916 33 H 0.085 0.915 34 H 0.093 0.907 35 H 0.228 0.772 36 H 0.149 0.851 37 H 0.145 0.855 38 H 0.140 0.860 39 H 0.142 0.858 40 H 0.147 0.853 41 H 0.072 0.928 42 H 0.115 0.885 43 H 0.250 0.750 44 H 0.083 0.917 45 H 0.104 0.896 46 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -13.926 6.378 6.179 16.517 hybrid contribution -0.166 -1.313 -1.299 1.854 sum -14.093 5.065 4.880 15.751 Atomic orbital electron populations 1.22657 0.94862 1.02822 1.03397 1.21472 0.93163 0.94088 0.83634 1.21725 1.02360 0.92597 1.02498 1.86923 1.75818 1.29517 1.42004 1.23059 0.93225 0.99249 0.85888 0.88407 1.86204 1.37381 1.52769 1.42361 1.19136 0.86405 0.92083 0.93401 1.20443 0.97204 1.02784 0.96738 1.20949 0.94612 0.95357 0.98972 1.21038 1.01469 0.97826 0.97871 1.20934 0.94302 0.98791 0.95559 1.21338 0.99814 0.98169 1.03761 1.19179 0.86720 0.78727 0.82437 1.90673 1.73620 1.44632 1.33678 1.49549 1.09874 1.55610 1.20544 1.24128 1.01010 0.93283 0.84068 1.19674 0.90646 0.82291 0.88545 1.86047 1.93814 1.18163 1.40667 1.21452 1.24849 1.07262 1.03095 0.90953 1.25051 0.94354 0.94932 0.98662 1.69262 1.35396 1.10692 1.38720 0.86270 0.79749 0.78369 0.82081 1.19434 1.20702 1.20677 1.23339 0.80901 0.98449 0.98479 0.91170 0.91055 0.91914 0.91609 0.91511 0.90716 0.77192 0.85117 0.85463 0.86040 0.85781 0.85310 0.92844 0.88525 0.75024 0.91724 0.89605 0.91654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.03 7.38 37.16 0.27 -1.76 16 2 C 0.12 1.64 0.93 -90.62 -0.08 1.56 16 3 C -0.13 -1.95 8.42 37.16 0.31 -1.64 16 4 O -0.53 -7.69 8.63 -35.23 -0.30 -8.00 16 5 C 0.05 0.75 1.99 -27.88 -0.06 0.69 16 6 H 0.10 1.48 5.38 -51.93 -0.28 1.20 16 7 O -0.28 -4.51 8.52 -39.31 -0.34 -4.85 16 8 C 0.14 1.88 5.10 -39.21 -0.20 1.68 16 9 C -0.15 -1.86 9.99 -39.43 -0.39 -2.25 16 10 C -0.08 -0.80 10.04 -39.61 -0.40 -1.20 16 11 C -0.16 -1.57 10.04 -39.56 -0.40 -1.97 16 12 C -0.08 -0.81 10.04 -39.61 -0.40 -1.20 16 13 C -0.21 -2.59 7.14 -39.43 -0.28 -2.87 16 14 C 0.54 11.20 5.98 -10.98 -0.07 11.13 16 15 O -0.55 -13.17 17.28 -14.35 -0.25 -13.42 16 16 N -0.62 -12.87 3.58 -185.42 -0.66 -13.54 16 17 C 0.10 1.97 5.03 -8.65 -0.04 1.92 16 18 C 0.23 5.36 1.57 -91.39 -0.14 5.22 16 19 O -0.57 -14.45 13.54 -35.23 -0.48 -14.93 16 20 C -0.53 -12.91 8.69 -34.44 -0.30 -13.21 16 21 H 0.07 1.74 7.81 -52.49 -0.41 1.33 16 22 C 0.07 1.74 5.39 -17.82 -0.10 1.65 16 23 N -0.90 -21.95 11.01 55.43 0.61 -21.34 16 24 Si 0.91 19.07 29.54 -169.99 -5.02 14.05 16 25 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 26 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 27 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 28 C 0.11 2.40 8.03 -8.52 -0.07 2.33 16 29 H 0.07 0.82 6.49 -51.93 -0.34 0.48 16 30 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.06 0.64 6.35 -51.93 -0.33 0.31 16 32 H 0.06 1.11 7.07 -51.93 -0.37 0.75 16 33 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 34 H 0.07 1.05 7.82 -51.93 -0.41 0.64 16 35 H 0.38 4.58 7.40 45.56 0.34 4.92 16 36 H 0.13 1.48 8.06 -52.48 -0.42 1.06 16 37 H 0.13 0.92 8.06 -52.49 -0.42 0.50 16 38 H 0.12 0.88 8.06 -52.49 -0.42 0.45 16 39 H 0.12 1.02 8.06 -52.49 -0.42 0.59 16 40 H 0.13 1.50 4.86 -52.49 -0.26 1.25 16 41 H 0.05 1.02 6.74 -51.93 -0.35 0.67 16 42 H 0.10 1.94 7.06 -51.93 -0.37 1.58 16 43 H 0.39 9.97 6.32 45.56 0.29 10.25 16 44 H 0.27 6.32 8.31 -40.82 -0.34 5.98 16 45 H 0.09 1.73 8.10 -51.93 -0.42 1.30 16 46 H 0.06 1.47 8.14 -51.93 -0.42 1.04 16 LS Contribution 365.55 15.07 5.51 5.51 Total: -1.00 -29.40 365.55 -8.26 -37.66 By element: Atomic # 1 Polarization: 23.78 SS G_CDS: -4.99 Total: 18.79 kcal Atomic # 6 Polarization: 2.41 SS G_CDS: -2.34 Total: 0.07 kcal Atomic # 7 Polarization: -34.83 SS G_CDS: -0.05 Total: -34.88 kcal Atomic # 8 Polarization: -39.83 SS G_CDS: -1.36 Total: -41.19 kcal Atomic # 14 Polarization: 19.07 SS G_CDS: -5.02 Total: 14.05 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -29.40 -8.26 -37.66 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001645982933.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.342 kcal (2) G-P(sol) polarization free energy of solvation -29.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.656 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds