Wall clock time and date at job start Tue Mar 31 2020 18:48:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53009 * 109.46869 * 2 1 4 4 O 1.42899 * 109.47429 * 239.99955 * 2 1 3 5 5 C 1.52998 * 109.47058 * 119.99713 * 2 1 3 6 6 H 1.08998 * 109.46750 * 65.00016 * 5 2 1 7 7 O 1.42903 * 109.47176 * 305.00594 * 5 2 1 8 8 C 1.35894 * 117.00359 * 94.35413 * 7 5 2 9 9 C 1.38735 * 120.05836 * 181.67896 * 8 7 5 10 10 C 1.38144 * 119.94374 * 179.74892 * 9 8 7 11 11 C 1.38263 * 120.05435 * 0.50709 * 10 9 8 12 12 C 1.38266 * 120.11397 * 359.76831 * 11 10 9 13 13 C 1.38142 * 120.05788 * 359.97438 * 12 11 10 14 14 C 1.50702 * 109.47128 * 185.00313 * 5 2 1 15 15 O 1.21279 * 119.99866 * 119.72515 * 14 5 2 16 16 N 1.34780 * 119.99720 * 299.99848 * 14 5 2 17 17 C 1.47062 * 136.05973 * 359.36071 * 16 14 5 18 18 C 1.53236 * 88.08232 * 207.20023 * 17 16 14 19 19 O 1.42902 * 114.19871 * 87.72583 * 18 17 16 20 20 C 1.50700 * 114.32561 * 220.46778 * 18 17 16 21 21 H 1.07999 * 119.99746 * 93.75627 * 20 18 17 22 22 C 1.37878 * 120.00306 * 273.75953 * 20 18 17 23 23 N 1.31521 * 119.99632 * 359.97438 * 22 20 18 24 24 Si 1.86794 * 120.00300 * 180.02562 * 22 20 18 25 25 H 1.48503 * 109.47236 * 359.97438 * 24 22 20 26 26 H 1.48501 * 109.47083 * 119.99838 * 24 22 20 27 27 H 1.48501 * 109.47272 * 240.00032 * 24 22 20 28 28 C 1.47060 * 136.05378 * 179.72405 * 16 14 5 29 29 H 1.09001 * 109.47393 * 300.00378 * 1 2 3 30 30 H 1.09005 * 109.46767 * 60.00255 * 1 2 3 31 31 H 1.08998 * 109.47043 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.46787 * 179.97438 * 3 2 1 33 33 H 1.09001 * 109.46522 * 299.99594 * 3 2 1 34 34 H 1.08998 * 109.46697 * 59.99569 * 3 2 1 35 35 H 0.96702 * 114.00003 * 299.99915 * 4 2 1 36 36 H 1.08003 * 120.02414 * 359.97438 * 9 8 7 37 37 H 1.08002 * 119.97242 * 180.27492 * 10 9 8 38 38 H 1.08001 * 119.94267 * 179.75163 * 11 10 9 39 39 H 1.08002 * 119.97273 * 179.97438 * 12 11 10 40 40 H 1.07993 * 120.03116 * 179.97438 * 13 12 11 41 41 H 1.09004 * 113.46448 * 321.93133 * 17 16 14 42 42 H 1.08999 * 113.46942 * 92.37234 * 17 16 14 43 43 H 0.96702 * 113.99979 * 86.30191 * 19 18 17 44 44 H 0.96996 * 119.99848 * 179.97438 * 23 22 20 45 45 H 1.09002 * 113.47124 * 267.62574 * 28 16 14 46 46 H 1.09001 * 113.47464 * 38.00566 * 28 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 8 2.0064 -0.6736 -1.1667 5 6 2.0400 -0.7212 1.2493 6 1 1.7516 -1.7714 1.2056 7 8 1.4701 -0.1188 2.4131 8 6 0.3371 -0.6829 2.9079 9 6 -0.2889 -0.1285 4.0149 10 6 -1.4434 -0.7009 4.5128 11 6 -1.9692 -1.8315 3.9153 12 6 -1.3440 -2.3893 2.8154 13 6 -0.1922 -1.8177 2.3104 14 6 3.5419 -0.6148 1.3128 15 8 4.0718 -0.0717 2.2589 16 7 4.2959 -1.1183 0.3155 17 6 4.0440 -1.8272 -0.9481 18 6 5.4290 -2.4673 -0.8054 19 8 5.4394 -3.6775 -0.0455 20 6 6.2027 -2.5668 -2.0947 21 1 6.8989 -1.7877 -2.3682 22 6 6.0219 -3.6523 -2.9253 23 7 5.1745 -4.6013 -2.5920 24 14 6.9815 -3.7760 -4.5231 25 1 7.8627 -2.5890 -4.6645 26 1 7.8093 -5.0088 -4.5092 27 1 6.0351 -3.8281 -5.6662 28 6 5.7328 -1.2063 0.0154 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0276 -0.0005 32 1 3.1300 1.4426 0.0005 33 1 1.6766 1.9563 -0.8901 34 1 1.6765 1.9564 0.8899 35 1 1.7211 -1.5952 -1.2329 36 1 0.1240 0.7519 4.4847 37 1 -1.9336 -0.2671 5.3719 38 1 -2.8696 -2.2798 4.3085 39 1 -1.7564 -3.2727 2.3507 40 1 0.2959 -2.2539 1.4516 41 1 3.2269 -2.5460 -0.8871 42 1 3.9591 -1.1636 -1.8086 43 1 5.2476 -4.4700 -0.5654 44 1 5.0470 -5.3648 -3.1765 45 1 6.1024 -0.3756 -0.5860 46 1 6.3491 -1.3971 0.8940 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001645982933.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:48:31 Heat of formation + Delta-G solvation = -106.230220 kcal Electronic energy + Delta-G solvation = -30816.485606 eV Core-core repulsion = 26673.132633 eV Total energy + Delta-G solvation = -4143.352973 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.28206 -40.96636 -39.43661 -38.71653 -37.86554 -35.83970 -34.08996 -33.54441 -31.96755 -31.30116 -30.69141 -28.68639 -28.41147 -26.90075 -26.65609 -23.71280 -23.26996 -22.38679 -21.54626 -19.87001 -19.60105 -19.33513 -18.72888 -17.71752 -17.40619 -17.00061 -16.98821 -16.71263 -16.16648 -15.92331 -15.88627 -15.41431 -15.26230 -15.00264 -14.61801 -14.47441 -14.36874 -14.13030 -13.74406 -13.60842 -13.55919 -13.39562 -13.19032 -13.08612 -13.01453 -12.77566 -12.73287 -12.69805 -12.47774 -12.21508 -12.11779 -11.87029 -11.68255 -11.40727 -11.29296 -10.75070 -10.55995 -10.12212 -9.95402 -9.54516 -9.18181 -8.25178 -6.39994 0.36997 0.45688 1.35038 1.47092 1.49782 1.54227 1.62555 2.34444 2.44360 2.81478 2.96862 3.05606 3.26269 3.40424 3.46950 3.76089 3.86518 3.90942 3.97271 4.05534 4.18323 4.28820 4.43298 4.47704 4.51677 4.59101 4.61265 4.66842 4.70991 4.73338 4.81839 4.89694 4.95139 5.00854 5.06637 5.11044 5.14670 5.33482 5.35095 5.46832 5.58988 5.76556 5.81139 5.94747 6.31068 6.59729 6.63998 6.82038 7.03757 7.32694 7.52713 8.81372 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.018274 B = 0.003349 C = 0.003273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1531.896186 B = 8359.283640 C = 8553.692785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.125 3.875 3 C -0.133 4.133 4 O -0.546 6.546 5 C 0.057 3.943 6 H 0.109 0.891 7 O -0.298 6.298 8 C 0.104 3.896 9 C -0.169 4.169 10 C -0.078 4.078 11 C -0.158 4.158 12 C -0.081 4.081 13 C -0.221 4.221 14 C 0.533 3.467 15 O -0.590 6.590 16 N -0.621 5.621 17 C 0.120 3.880 18 C 0.211 3.789 19 O -0.588 6.588 20 C -0.549 4.549 21 H 0.069 0.931 22 C 0.037 3.963 23 N -0.913 5.913 24 Si 0.967 3.033 25 H -0.271 1.271 26 H -0.283 1.283 27 H -0.275 1.275 28 C 0.105 3.895 29 H 0.066 0.934 30 H 0.084 0.916 31 H 0.076 0.924 32 H 0.034 0.966 33 H 0.084 0.916 34 H 0.074 0.926 35 H 0.388 0.612 36 H 0.128 0.872 37 H 0.156 0.844 38 H 0.152 0.848 39 H 0.149 0.851 40 H 0.130 0.870 41 H 0.066 0.934 42 H 0.101 0.899 43 H 0.390 0.610 44 H 0.276 0.724 45 H 0.100 0.900 46 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.155 4.482 4.467 18.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.083 3.917 3 C -0.190 4.190 4 O -0.355 6.355 5 C -0.003 4.003 6 H 0.126 0.874 7 O -0.211 6.211 8 C 0.060 3.940 9 C -0.187 4.187 10 C -0.096 4.096 11 C -0.176 4.176 12 C -0.099 4.099 13 C -0.239 4.239 14 C 0.322 3.678 15 O -0.472 6.472 16 N -0.354 5.354 17 C -0.002 4.002 18 C 0.170 3.830 19 O -0.401 6.401 20 C -0.587 4.587 21 H 0.088 0.912 22 C -0.164 4.164 23 N -0.554 5.554 24 Si 0.793 3.207 25 H -0.195 1.195 26 H -0.209 1.209 27 H -0.200 1.200 28 C -0.017 4.017 29 H 0.085 0.915 30 H 0.102 0.898 31 H 0.095 0.905 32 H 0.053 0.947 33 H 0.103 0.897 34 H 0.093 0.907 35 H 0.240 0.760 36 H 0.146 0.854 37 H 0.174 0.826 38 H 0.170 0.830 39 H 0.166 0.834 40 H 0.148 0.852 41 H 0.084 0.916 42 H 0.119 0.881 43 H 0.246 0.754 44 H 0.086 0.914 45 H 0.117 0.883 46 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -16.580 5.820 5.504 18.414 hybrid contribution 0.625 -1.165 -0.975 1.643 sum -15.954 4.655 4.529 17.226 Atomic orbital electron populations 1.22540 0.92202 1.03944 1.03780 1.21447 0.94894 0.93096 0.82249 1.21712 1.00304 0.93611 1.03402 1.86876 1.76348 1.30367 1.41909 1.22948 0.89747 1.00314 0.87293 0.87378 1.86159 1.38866 1.53492 1.42602 1.19429 0.86352 0.93520 0.94715 1.20672 0.98213 1.03210 0.96640 1.21313 0.93578 0.95257 0.99449 1.21464 1.01972 0.97144 0.97015 1.21288 0.93516 0.99332 0.95721 1.21434 1.00620 0.97831 1.04022 1.20082 0.88789 0.77537 0.81364 1.90634 1.74963 1.46464 1.35174 1.49580 1.09354 1.55581 1.20865 1.23849 0.99599 0.92915 0.83824 1.19918 0.92755 0.81890 0.88434 1.86035 1.94087 1.18754 1.41271 1.21621 1.25518 1.07784 1.03771 0.91246 1.25666 0.95036 0.94576 1.01117 1.69304 1.35790 1.10867 1.39489 0.85364 0.78516 0.77924 0.78941 1.19506 1.20903 1.20038 1.23371 0.81818 0.98619 0.97937 0.91533 0.89758 0.90484 0.94666 0.89702 0.90703 0.76025 0.85352 0.82638 0.83007 0.83375 0.85206 0.91567 0.88084 0.75404 0.91357 0.88255 0.93263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.44 7.38 71.98 0.53 -2.91 16 2 C 0.12 3.36 0.93 -10.79 -0.01 3.35 16 3 C -0.13 -3.85 8.42 71.99 0.61 -3.24 16 4 O -0.55 -14.98 8.63 -148.98 -1.29 -16.26 16 5 C 0.06 1.86 1.99 29.85 0.06 1.92 16 6 H 0.11 3.23 5.38 -2.39 -0.01 3.22 16 7 O -0.30 -9.93 8.52 -73.32 -0.62 -10.55 16 8 C 0.10 2.84 5.10 22.51 0.11 2.95 16 9 C -0.17 -3.96 9.99 22.37 0.22 -3.74 16 10 C -0.08 -1.35 10.04 22.25 0.22 -1.12 16 11 C -0.16 -2.47 10.04 22.28 0.22 -2.24 16 12 C -0.08 -1.43 10.04 22.25 0.22 -1.21 16 13 C -0.22 -5.03 7.14 22.37 0.16 -4.87 16 14 C 0.53 22.62 5.98 87.66 0.52 23.14 16 15 O -0.59 -29.68 17.28 16.01 0.28 -29.40 16 16 N -0.62 -26.20 3.58 -859.40 -3.08 -29.28 16 17 C 0.12 4.82 5.03 83.09 0.42 5.24 16 18 C 0.21 9.96 1.57 -11.29 -0.02 9.94 16 19 O -0.59 -30.15 13.54 -148.98 -2.02 -32.16 16 20 C -0.55 -26.87 8.69 25.60 0.22 -26.65 16 21 H 0.07 3.35 7.81 -2.91 -0.02 3.33 16 22 C 0.04 1.75 5.39 84.65 0.46 2.20 16 23 N -0.91 -44.04 11.01 21.45 0.24 -43.81 16 24 Si 0.97 38.55 29.54 68.60 2.03 40.58 16 25 H -0.27 -10.73 7.11 99.48 0.71 -10.02 16 26 H -0.28 -11.32 7.11 99.48 0.71 -10.61 16 27 H -0.27 -10.65 7.11 99.48 0.71 -9.94 16 28 C 0.11 4.71 8.03 83.17 0.67 5.37 16 29 H 0.07 1.45 6.49 -2.39 -0.02 1.44 16 30 H 0.08 1.53 8.14 -2.38 -0.02 1.51 16 31 H 0.08 1.36 6.35 -2.39 -0.02 1.35 16 32 H 0.03 1.21 7.07 -2.39 -0.02 1.20 16 33 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 34 H 0.07 2.13 7.82 -2.39 -0.02 2.11 16 35 H 0.39 8.70 7.40 -74.06 -0.55 8.15 16 36 H 0.13 2.93 8.06 -2.91 -0.02 2.91 16 37 H 0.16 1.72 8.06 -2.91 -0.02 1.70 16 38 H 0.15 1.46 8.06 -2.91 -0.02 1.43 16 39 H 0.15 1.86 8.06 -2.91 -0.02 1.84 16 40 H 0.13 2.82 4.86 -2.91 -0.01 2.81 16 41 H 0.07 2.47 6.74 -2.39 -0.02 2.46 16 42 H 0.10 4.00 7.06 -2.39 -0.02 3.99 16 43 H 0.39 20.02 6.32 -74.06 -0.47 19.55 16 44 H 0.28 12.58 8.31 -92.71 -0.77 11.81 16 45 H 0.10 4.11 8.10 -2.39 -0.02 4.09 16 46 H 0.05 2.32 8.14 -2.39 -0.02 2.30 16 Total: -1.00 -64.26 365.55 0.18 -64.08 By element: Atomic # 1 Polarization: 48.64 SS G_CDS: 0.01 Total: 48.65 kcal Atomic # 6 Polarization: 3.52 SS G_CDS: 4.63 Total: 8.15 kcal Atomic # 7 Polarization: -70.24 SS G_CDS: -2.84 Total: -73.08 kcal Atomic # 8 Polarization: -84.72 SS G_CDS: -3.65 Total: -88.37 kcal Atomic # 14 Polarization: 38.55 SS G_CDS: 2.03 Total: 40.58 kcal Total: -64.26 0.18 -64.08 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001645982933.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.151 kcal (2) G-P(sol) polarization free energy of solvation -64.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds