Wall clock time and date at job start Tue Mar 31 2020 18:34:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.47506 * 2 1 4 4 C 1.52996 * 109.46955 * 239.99605 * 2 1 3 5 5 C 1.50705 * 109.47104 * 60.00523 * 4 2 1 6 6 H 1.08003 * 119.99441 * 359.97438 * 5 4 2 7 7 C 1.37875 * 120.00066 * 179.97438 * 5 4 2 8 8 N 1.31512 * 120.00140 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 119.99708 * 179.97438 * 7 5 4 10 10 H 1.48507 * 109.47033 * 60.00211 * 9 7 5 11 11 H 1.48507 * 109.47027 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.47170 * 299.99726 * 9 7 5 13 13 C 1.53006 * 109.46930 * 120.00065 * 2 1 3 14 14 O 1.45202 * 109.47060 * 299.99847 * 13 2 1 15 15 C 1.34779 * 116.99985 * 180.02562 * 14 13 2 16 16 O 1.21553 * 119.99982 * 0.02562 * 15 14 13 17 17 C 1.47134 * 120.00307 * 179.97438 * 15 14 13 18 18 C 1.36676 * 127.54549 * 359.97438 * 17 15 14 19 19 O 1.34071 * 108.88209 * 179.90832 * 18 17 15 20 20 C 1.33406 * 111.31154 * 359.49957 * 19 18 17 21 21 C 1.36142 * 108.06206 * 0.91482 * 20 19 18 22 22 C 1.47711 * 122.21679 * 178.94961 * 21 20 19 23 23 O 1.21620 * 122.33133 * 223.65661 * 22 21 20 24 24 N 1.35753 * 115.34331 * 43.68168 * 22 21 20 25 25 C 1.45337 * 119.17721 * 14.06050 * 24 22 21 26 26 C 1.52900 * 113.82622 * 273.95028 * 25 24 22 27 27 C 1.50517 * 128.59186 * 181.00412 * 20 19 18 28 28 H 1.09008 * 109.46661 * 300.00534 * 1 2 3 29 29 H 1.08998 * 109.47119 * 59.99390 * 1 2 3 30 30 H 1.08992 * 109.47747 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47157 * 179.97438 * 3 2 1 32 32 H 1.08996 * 109.47102 * 299.99999 * 3 2 1 33 33 H 1.08998 * 109.47157 * 59.99754 * 3 2 1 34 34 H 1.09002 * 109.47119 * 179.97438 * 4 2 1 35 35 H 1.08999 * 109.47582 * 300.00527 * 4 2 1 36 36 H 0.96995 * 120.00163 * 180.02562 * 8 7 5 37 37 H 1.08990 * 109.47185 * 179.97438 * 13 2 1 38 38 H 1.08999 * 109.46933 * 59.99886 * 13 2 1 39 39 H 1.07997 * 125.56226 * 359.95086 * 18 17 15 40 40 H 0.97000 * 120.40667 * 194.04599 * 24 22 21 41 41 H 1.08996 * 108.60854 * 152.83063 * 25 24 22 42 42 H 1.08996 * 108.50284 * 34.99806 * 25 24 22 43 43 H 1.09003 * 109.46873 * 284.34117 * 26 25 24 44 44 H 1.09004 * 109.46159 * 164.35579 * 26 25 24 45 45 H 1.09002 * 109.45503 * 349.16225 * 27 20 19 46 46 H 1.09000 * 109.45232 * 229.20438 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.5377 -0.0109 -2.4797 6 1 0.9165 0.8670 -2.3805 7 6 1.8712 -0.4817 -3.7319 8 7 2.6272 -1.5510 -3.8526 9 14 1.2480 0.3986 -5.2572 10 1 1.7421 1.7990 -5.2571 11 1 1.7440 -0.3008 -6.4697 12 1 -0.2370 0.3975 -5.2573 13 6 2.0400 -0.7213 1.2493 14 8 1.5560 -0.0368 2.4348 15 6 1.9185 -0.5486 3.6278 16 8 2.6205 -1.5398 3.6758 17 6 1.4656 0.0930 4.8720 18 6 0.6804 1.2046 4.9978 19 8 0.4970 1.4610 6.3009 20 6 1.1184 0.5606 7.0644 21 6 1.7570 -0.3190 6.2447 22 6 2.5661 -1.4384 6.7684 23 8 3.6527 -1.7281 6.3052 24 7 2.0123 -2.1217 7.8025 25 6 0.6033 -1.9313 8.1038 26 6 0.3236 -0.7429 9.0243 27 6 1.1524 0.4664 8.5662 28 1 -0.3633 0.5140 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0275 -0.0005 31 1 3.1301 1.4424 0.0005 32 1 1.6768 1.9563 -0.8899 33 1 1.6768 1.9563 0.8899 34 1 3.1300 -0.7209 -1.2494 35 1 1.6766 -1.7490 -1.2492 36 1 2.8621 -1.8820 -4.7335 37 1 3.1299 -0.7217 1.2491 38 1 1.6766 -1.7489 1.2493 39 1 0.2733 1.7818 4.1809 40 1 2.5502 -2.7297 8.3334 41 1 0.2239 -2.8360 8.5788 42 1 0.0666 -1.7799 7.1673 43 1 0.5960 -1.0035 10.0471 44 1 -0.7366 -0.4932 8.9831 45 1 0.7349 1.3766 8.9966 46 1 2.1834 0.3470 8.8992 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001649217008.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:34:12 Heat of formation + Delta-G solvation = -119.638745 kcal Electronic energy + Delta-G solvation = -29174.225821 eV Core-core repulsion = 25030.291410 eV Total energy + Delta-G solvation = -4143.934410 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.25765 -39.92914 -39.70812 -37.12484 -36.87087 -35.28340 -33.28008 -33.18995 -32.30844 -30.41125 -27.40631 -26.80730 -26.40340 -26.34772 -24.73668 -23.85945 -22.76912 -21.90753 -20.19724 -19.84671 -18.24224 -17.67462 -17.48022 -17.08756 -16.75467 -16.39113 -16.07121 -15.94124 -15.71807 -15.14113 -14.89315 -14.54129 -14.35389 -13.82410 -13.62975 -13.48613 -13.42860 -13.27773 -12.93727 -12.34853 -12.31026 -12.26958 -12.03924 -11.91685 -11.52878 -11.25573 -10.94773 -10.84619 -10.58635 -10.50174 -10.33876 -10.27782 -10.24102 -10.19456 -10.12993 -9.71227 -9.43065 -9.20908 -8.99995 -8.93958 -8.34933 -5.98980 -4.00382 0.95942 1.04541 2.17552 2.53010 2.83055 2.98937 3.19937 3.33651 3.38712 3.40294 4.01771 4.10756 4.26171 4.31792 4.42026 4.46794 4.66868 4.80667 4.90462 5.09963 5.12191 5.24748 5.31939 5.36424 5.40698 5.53441 5.55050 5.56275 5.63696 5.84681 6.08421 6.21477 6.38319 6.45577 6.50663 6.62648 6.64713 6.71447 6.79688 6.83265 7.11745 7.12493 7.14767 7.62940 7.74937 7.97513 7.99151 8.04118 8.41006 9.03702 9.62477 11.12647 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.027010 B = 0.002337 C = 0.002233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1036.388837 B =11978.143547 C =12537.817707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.058 4.058 3 C -0.126 4.126 4 C 0.034 3.966 5 C -0.510 4.510 6 H 0.061 0.939 7 C 0.056 3.944 8 N -0.895 5.895 9 Si 0.891 3.109 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.277 1.277 13 C 0.082 3.918 14 O -0.350 6.350 15 C 0.521 3.479 16 O -0.484 6.484 17 C -0.169 4.169 18 C 0.047 3.953 19 O -0.156 6.156 20 C 0.033 3.967 21 C -0.191 4.191 22 C 0.592 3.408 23 O -0.491 6.491 24 N -0.732 5.732 25 C 0.105 3.895 26 C -0.135 4.135 27 C -0.041 4.041 28 H 0.038 0.962 29 H 0.066 0.934 30 H 0.043 0.957 31 H 0.044 0.956 32 H 0.066 0.934 33 H 0.038 0.962 34 H 0.019 0.981 35 H 0.019 0.981 36 H 0.261 0.739 37 H 0.067 0.933 38 H 0.066 0.934 39 H 0.231 0.769 40 H 0.405 0.595 41 H 0.086 0.914 42 H 0.074 0.926 43 H 0.084 0.916 44 H 0.086 0.914 45 H 0.093 0.907 46 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.044 4.738 29.492 30.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.058 4.058 3 C -0.183 4.183 4 C -0.003 4.003 5 C -0.548 4.548 6 H 0.079 0.921 7 C -0.145 4.145 8 N -0.534 5.534 9 Si 0.719 3.281 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.203 1.203 13 C 0.009 3.991 14 O -0.266 6.266 15 C 0.364 3.636 16 O -0.371 6.371 17 C -0.172 4.172 18 C -0.022 4.022 19 O -0.050 6.050 20 C -0.019 4.019 21 C -0.196 4.196 22 C 0.378 3.622 23 O -0.363 6.363 24 N -0.387 5.387 25 C -0.021 4.021 26 C -0.174 4.174 27 C -0.079 4.079 28 H 0.057 0.943 29 H 0.084 0.916 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.085 0.915 33 H 0.057 0.943 34 H 0.037 0.963 35 H 0.037 0.963 36 H 0.071 0.929 37 H 0.086 0.914 38 H 0.085 0.915 39 H 0.247 0.753 40 H 0.242 0.758 41 H 0.104 0.896 42 H 0.093 0.907 43 H 0.103 0.897 44 H 0.105 0.895 45 H 0.112 0.888 46 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -7.412 4.497 29.056 30.322 hybrid contribution 0.065 -0.059 -0.988 0.992 sum -7.347 4.438 28.067 29.350 Atomic orbital electron populations 1.21714 0.94846 1.00955 1.00733 1.20818 0.96106 0.96217 0.92647 1.21715 1.00153 0.95696 1.00728 1.19131 0.96467 0.95312 0.89373 1.21104 1.31279 1.12137 0.90286 0.92137 1.25018 0.95309 0.95095 0.99111 1.69954 1.36871 1.23015 1.23604 0.86675 0.79142 0.79761 0.82518 1.20274 1.21402 1.20280 1.23535 0.99148 0.95921 0.80512 1.86501 1.69734 1.55987 1.14427 1.19804 0.78123 0.82251 0.83438 1.90940 1.33906 1.24471 1.87826 1.19944 1.06505 0.99801 0.90915 1.24950 0.97810 0.96500 0.82893 1.83593 1.58418 1.45992 1.17043 1.22616 0.95275 0.89607 0.94394 1.20897 1.05596 1.01334 0.91740 1.17629 0.84846 0.80744 0.79016 1.90911 1.21210 1.66824 1.57334 1.45678 1.11576 1.47274 1.34177 1.21184 0.81930 0.98684 1.00285 1.22264 1.00970 0.93697 1.00439 1.20308 1.03054 1.00655 0.83846 0.94295 0.91552 0.93747 0.93699 0.91548 0.94287 0.96277 0.96308 0.92947 0.91441 0.91538 0.75294 0.75829 0.89600 0.90736 0.89713 0.89548 0.88793 0.88384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.35 8.08 37.16 0.30 -2.05 16 2 C -0.06 -1.17 0.61 -154.51 -0.09 -1.27 16 3 C -0.13 -2.38 8.08 37.16 0.30 -2.08 16 4 C 0.03 0.87 4.04 -27.88 -0.11 0.75 16 5 C -0.51 -13.78 7.65 -34.44 -0.26 -14.05 16 6 H 0.06 1.57 5.68 -52.48 -0.30 1.27 16 7 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 8 N -0.90 -26.77 13.29 55.43 0.74 -26.03 16 9 Si 0.89 21.41 29.54 -169.99 -5.02 16.39 16 10 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 11 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 12 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 13 C 0.08 1.58 4.33 37.16 0.16 1.74 16 14 O -0.35 -5.99 8.74 -40.71 -0.36 -6.34 16 15 C 0.52 9.13 7.95 34.34 0.27 9.40 16 16 O -0.48 -10.27 15.56 -23.40 -0.36 -10.63 16 17 C -0.17 -2.32 6.32 -103.63 -0.65 -2.97 16 18 C 0.05 0.46 11.94 30.17 0.36 0.82 16 19 O -0.16 -1.38 10.48 8.66 0.09 -1.29 16 20 C 0.03 0.29 6.35 -35.15 -0.22 0.07 16 21 C -0.19 -2.40 4.99 -103.56 -0.52 -2.91 16 22 C 0.59 8.08 7.29 -11.95 -0.09 7.99 16 23 O -0.49 -9.14 17.12 -3.81 -0.07 -9.20 16 24 N -0.73 -6.16 5.27 -61.87 -0.33 -6.49 16 25 C 0.10 0.56 6.00 -4.72 -0.03 0.53 16 26 C -0.13 -0.41 6.32 -26.48 -0.17 -0.58 16 27 C -0.04 -0.20 5.65 -27.67 -0.16 -0.36 16 28 H 0.04 0.63 7.68 -51.92 -0.40 0.23 16 29 H 0.07 1.30 6.62 -51.93 -0.34 0.96 16 30 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.04 0.86 8.14 -51.93 -0.42 0.43 16 32 H 0.07 1.31 6.62 -51.93 -0.34 0.97 16 33 H 0.04 0.64 7.68 -51.93 -0.40 0.24 16 34 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 35 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 36 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 37 H 0.07 1.36 8.14 -51.93 -0.42 0.93 16 38 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 39 H 0.23 1.52 8.06 -52.49 -0.42 1.10 16 40 H 0.41 2.68 8.95 -40.82 -0.37 2.32 16 41 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 42 H 0.07 0.53 6.93 -51.93 -0.36 0.17 16 43 H 0.08 0.12 8.14 -51.93 -0.42 -0.31 16 44 H 0.09 0.18 8.14 -51.93 -0.42 -0.24 16 45 H 0.09 0.28 8.14 -51.93 -0.42 -0.14 16 46 H 0.10 0.49 8.04 -51.93 -0.42 0.07 16 LS Contribution 378.35 15.07 5.70 5.70 Total: -1.00 -36.46 378.35 -7.32 -43.79 By element: Atomic # 1 Polarization: 4.32 SS G_CDS: -6.71 Total: -2.40 kcal Atomic # 6 Polarization: -2.49 SS G_CDS: -1.01 Total: -3.50 kcal Atomic # 7 Polarization: -32.93 SS G_CDS: 0.41 Total: -32.52 kcal Atomic # 8 Polarization: -26.77 SS G_CDS: -0.69 Total: -27.47 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -36.46 -7.32 -43.79 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649217008.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.853 kcal (2) G-P(sol) polarization free energy of solvation -36.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds