Wall clock time and date at job start Tue Mar 31 2020 18:34:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.47506 * 2 1 4 4 C 1.52996 * 109.46955 * 239.99605 * 2 1 3 5 5 C 1.50705 * 109.47104 * 60.00523 * 4 2 1 6 6 H 1.08003 * 119.99441 * 359.97438 * 5 4 2 7 7 C 1.37875 * 120.00066 * 179.97438 * 5 4 2 8 8 N 1.31512 * 120.00140 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 119.99708 * 179.97438 * 7 5 4 10 10 H 1.48507 * 109.47033 * 60.00211 * 9 7 5 11 11 H 1.48507 * 109.47027 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.47170 * 299.99726 * 9 7 5 13 13 C 1.53006 * 109.46930 * 120.00065 * 2 1 3 14 14 O 1.45202 * 109.47060 * 299.99847 * 13 2 1 15 15 C 1.34779 * 116.99985 * 180.02562 * 14 13 2 16 16 O 1.21553 * 119.99982 * 0.02562 * 15 14 13 17 17 C 1.47134 * 120.00307 * 179.97438 * 15 14 13 18 18 C 1.36676 * 127.54549 * 359.97438 * 17 15 14 19 19 O 1.34071 * 108.88209 * 179.90832 * 18 17 15 20 20 C 1.33406 * 111.31154 * 359.49957 * 19 18 17 21 21 C 1.36142 * 108.06206 * 0.91482 * 20 19 18 22 22 C 1.47711 * 122.21679 * 178.94961 * 21 20 19 23 23 O 1.21620 * 122.33133 * 223.65661 * 22 21 20 24 24 N 1.35753 * 115.34331 * 43.68168 * 22 21 20 25 25 C 1.45337 * 119.17721 * 14.06050 * 24 22 21 26 26 C 1.52900 * 113.82622 * 273.95028 * 25 24 22 27 27 C 1.50517 * 128.59186 * 181.00412 * 20 19 18 28 28 H 1.09008 * 109.46661 * 300.00534 * 1 2 3 29 29 H 1.08998 * 109.47119 * 59.99390 * 1 2 3 30 30 H 1.08992 * 109.47747 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47157 * 179.97438 * 3 2 1 32 32 H 1.08996 * 109.47102 * 299.99999 * 3 2 1 33 33 H 1.08998 * 109.47157 * 59.99754 * 3 2 1 34 34 H 1.09002 * 109.47119 * 179.97438 * 4 2 1 35 35 H 1.08999 * 109.47582 * 300.00527 * 4 2 1 36 36 H 0.96995 * 120.00163 * 180.02562 * 8 7 5 37 37 H 1.08990 * 109.47185 * 179.97438 * 13 2 1 38 38 H 1.08999 * 109.46933 * 59.99886 * 13 2 1 39 39 H 1.07997 * 125.56226 * 359.95086 * 18 17 15 40 40 H 0.97000 * 120.40667 * 194.04599 * 24 22 21 41 41 H 1.08996 * 108.60854 * 152.83063 * 25 24 22 42 42 H 1.08996 * 108.50284 * 34.99806 * 25 24 22 43 43 H 1.09003 * 109.46873 * 284.34117 * 26 25 24 44 44 H 1.09004 * 109.46159 * 164.35579 * 26 25 24 45 45 H 1.09002 * 109.45503 * 349.16225 * 27 20 19 46 46 H 1.09000 * 109.45232 * 229.20438 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.5377 -0.0109 -2.4797 6 1 0.9165 0.8670 -2.3805 7 6 1.8712 -0.4817 -3.7319 8 7 2.6272 -1.5510 -3.8526 9 14 1.2480 0.3986 -5.2572 10 1 1.7421 1.7990 -5.2571 11 1 1.7440 -0.3008 -6.4697 12 1 -0.2370 0.3975 -5.2573 13 6 2.0400 -0.7213 1.2493 14 8 1.5560 -0.0368 2.4348 15 6 1.9185 -0.5486 3.6278 16 8 2.6205 -1.5398 3.6758 17 6 1.4656 0.0930 4.8720 18 6 0.6804 1.2046 4.9978 19 8 0.4970 1.4610 6.3009 20 6 1.1184 0.5606 7.0644 21 6 1.7570 -0.3190 6.2447 22 6 2.5661 -1.4384 6.7684 23 8 3.6527 -1.7281 6.3052 24 7 2.0123 -2.1217 7.8025 25 6 0.6033 -1.9313 8.1038 26 6 0.3236 -0.7429 9.0243 27 6 1.1524 0.4664 8.5662 28 1 -0.3633 0.5140 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0275 -0.0005 31 1 3.1301 1.4424 0.0005 32 1 1.6768 1.9563 -0.8899 33 1 1.6768 1.9563 0.8899 34 1 3.1300 -0.7209 -1.2494 35 1 1.6766 -1.7490 -1.2492 36 1 2.8621 -1.8820 -4.7335 37 1 3.1299 -0.7217 1.2491 38 1 1.6766 -1.7489 1.2493 39 1 0.2733 1.7818 4.1809 40 1 2.5502 -2.7297 8.3334 41 1 0.2239 -2.8360 8.5788 42 1 0.0666 -1.7799 7.1673 43 1 0.5960 -1.0035 10.0471 44 1 -0.7366 -0.4932 8.9831 45 1 0.7349 1.3766 8.9966 46 1 2.1834 0.3470 8.8992 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001649217008.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:34:11 Heat of formation + Delta-G solvation = -144.270745 kcal Electronic energy + Delta-G solvation = -29175.293944 eV Core-core repulsion = 25030.291410 eV Total energy + Delta-G solvation = -4145.002534 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -44.05406 -41.36158 -40.58241 -38.72753 -37.66397 -36.87797 -34.45871 -34.12504 -33.81459 -31.14712 -29.33401 -28.14510 -27.95317 -27.18883 -25.88468 -25.05139 -24.38543 -22.55164 -21.17803 -20.79628 -19.90454 -18.60276 -18.41009 -18.35714 -18.05648 -17.67155 -17.33206 -17.22701 -16.54075 -16.43344 -16.09530 -15.47800 -15.28374 -15.19639 -15.08996 -14.78454 -14.44767 -14.13017 -14.05094 -14.01813 -13.89830 -13.66652 -12.96324 -12.76756 -12.70052 -12.64457 -12.49784 -12.31456 -12.26925 -12.01514 -11.88747 -11.81797 -11.80680 -11.40520 -11.33129 -11.09979 -11.06121 -10.92299 -10.52498 -10.15227 -9.77672 -8.15532 -6.24103 -0.02822 0.24498 1.34438 1.42948 1.45698 1.51454 1.52951 1.62254 1.94111 2.33838 2.44268 3.18839 3.28770 3.38890 3.55988 3.85232 3.89750 3.89882 3.93191 4.05531 4.16913 4.20043 4.30561 4.45688 4.53830 4.56795 4.61194 4.72780 4.80341 4.82940 4.97130 5.02871 5.08314 5.10814 5.13450 5.20365 5.33807 5.41531 5.45613 5.50284 5.52439 5.67436 5.73979 5.86516 5.94082 6.03792 6.26523 6.65059 6.89682 7.12582 7.43671 8.97208 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.027010 B = 0.002337 C = 0.002233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1036.388837 B =11978.143547 C =12537.817707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.052 4.052 3 C -0.120 4.120 4 C 0.038 3.962 5 C -0.514 4.514 6 H 0.076 0.924 7 C -0.006 4.006 8 N -0.940 5.940 9 Si 0.963 3.037 10 H -0.265 1.265 11 H -0.291 1.291 12 H -0.264 1.264 13 C 0.092 3.908 14 O -0.334 6.334 15 C 0.522 3.478 16 O -0.534 6.534 17 C -0.218 4.218 18 C 0.090 3.910 19 O -0.144 6.144 20 C 0.066 3.934 21 C -0.233 4.233 22 C 0.582 3.418 23 O -0.562 6.562 24 N -0.715 5.715 25 C 0.094 3.906 26 C -0.124 4.124 27 C -0.046 4.046 28 H 0.073 0.927 29 H 0.059 0.941 30 H 0.036 0.964 31 H 0.033 0.967 32 H 0.060 0.940 33 H 0.072 0.928 34 H -0.014 1.014 35 H -0.012 1.012 36 H 0.260 0.740 37 H 0.050 0.950 38 H 0.054 0.946 39 H 0.266 0.734 40 H 0.413 0.587 41 H 0.114 0.886 42 H 0.055 0.945 43 H 0.112 0.888 44 H 0.107 0.893 45 H 0.124 0.876 46 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.332 7.741 32.103 34.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.052 4.052 3 C -0.177 4.177 4 C 0.001 3.999 5 C -0.552 4.552 6 H 0.094 0.906 7 C -0.203 4.203 8 N -0.581 5.581 9 Si 0.788 3.212 10 H -0.190 1.190 11 H -0.217 1.217 12 H -0.189 1.189 13 C 0.018 3.982 14 O -0.251 6.251 15 C 0.368 3.632 16 O -0.425 6.425 17 C -0.221 4.221 18 C 0.021 3.979 19 O -0.037 6.037 20 C 0.014 3.986 21 C -0.237 4.237 22 C 0.370 3.630 23 O -0.440 6.440 24 N -0.368 5.368 25 C -0.030 4.030 26 C -0.162 4.162 27 C -0.083 4.083 28 H 0.092 0.908 29 H 0.078 0.922 30 H 0.055 0.945 31 H 0.052 0.948 32 H 0.079 0.921 33 H 0.091 0.909 34 H 0.004 0.996 35 H 0.006 0.994 36 H 0.069 0.931 37 H 0.068 0.932 38 H 0.072 0.928 39 H 0.282 0.718 40 H 0.251 0.749 41 H 0.132 0.868 42 H 0.073 0.927 43 H 0.130 0.870 44 H 0.125 0.875 45 H 0.143 0.857 46 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -10.772 7.522 31.735 34.347 hybrid contribution 1.041 -1.010 -1.642 2.191 sum -9.731 6.512 30.093 32.291 Atomic orbital electron populations 1.21652 0.92950 1.00933 1.02049 1.20628 0.97506 0.96569 0.90503 1.21660 0.99521 0.94491 1.02031 1.19006 0.94364 0.94374 0.92167 1.21499 1.30689 1.12246 0.90719 0.90634 1.25998 0.95575 0.95862 1.02874 1.70123 1.38679 1.25003 1.24284 0.85525 0.79052 0.78704 0.77926 1.19027 1.21689 1.18886 1.23159 0.98043 0.95471 0.81531 1.86468 1.69397 1.55281 1.13930 1.20493 0.76958 0.81634 0.84163 1.90922 1.36419 1.26900 1.88271 1.19861 1.10126 1.02486 0.89633 1.25488 0.94486 0.94094 0.83860 1.83680 1.57861 1.45469 1.16653 1.23278 0.92283 0.87349 0.95700 1.20981 1.07823 1.02851 0.92087 1.18029 0.84143 0.81297 0.79566 1.90859 1.24168 1.69045 1.59926 1.45670 1.12881 1.45807 1.32458 1.21523 0.79477 1.01584 1.00372 1.22281 1.01843 0.91189 1.00865 1.20658 1.03836 1.03055 0.80776 0.90829 0.92198 0.94531 0.94786 0.92135 0.90903 0.99590 0.99382 0.93091 0.93198 0.92788 0.71800 0.74948 0.86758 0.92665 0.86963 0.87461 0.85727 0.88451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.30 8.08 71.98 0.58 -3.72 16 2 C -0.05 -2.14 0.61 -52.18 -0.03 -2.17 16 3 C -0.12 -4.43 8.08 71.98 0.58 -3.85 16 4 C 0.04 2.02 4.04 29.85 0.12 2.14 16 5 C -0.51 -28.14 7.65 25.60 0.20 -27.94 16 6 H 0.08 3.84 5.68 -2.91 -0.02 3.83 16 7 C -0.01 -0.36 5.46 84.65 0.46 0.11 16 8 N -0.94 -58.20 13.29 21.45 0.28 -57.92 16 9 Si 0.96 44.05 29.54 68.60 2.03 46.08 16 10 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 11 H -0.29 -13.34 7.11 99.48 0.71 -12.63 16 12 H -0.26 -11.46 7.11 99.48 0.71 -10.75 16 13 C 0.09 3.70 4.33 71.98 0.31 4.02 16 14 O -0.33 -11.43 8.74 -56.90 -0.50 -11.92 16 15 C 0.52 18.92 7.95 70.16 0.56 19.48 16 16 O -0.53 -24.47 15.56 23.57 0.37 -24.10 16 17 C -0.22 -5.91 6.32 -19.22 -0.12 -6.03 16 18 C 0.09 1.46 11.94 67.45 0.81 2.27 16 19 O -0.14 -1.97 10.48 8.06 0.08 -1.89 16 20 C 0.07 0.98 6.35 25.14 0.16 1.14 16 21 C -0.23 -5.78 4.99 -19.18 -0.10 -5.88 16 22 C 0.58 16.64 7.29 86.59 0.63 17.27 16 23 O -0.56 -22.79 17.12 4.58 0.08 -22.71 16 24 N -0.71 -11.73 5.27 -467.36 -2.46 -14.20 16 25 C 0.09 0.78 6.00 86.56 0.52 1.30 16 26 C -0.12 -0.20 6.32 30.76 0.19 -0.01 16 27 C -0.05 -0.27 5.65 29.99 0.17 -0.10 16 28 H 0.07 2.15 7.68 -2.38 -0.02 2.13 16 29 H 0.06 2.24 6.62 -2.39 -0.02 2.23 16 30 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 31 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.06 2.30 6.62 -2.39 -0.02 2.29 16 33 H 0.07 2.19 7.68 -2.39 -0.02 2.17 16 34 H -0.01 -0.84 8.14 -2.39 -0.02 -0.86 16 35 H -0.01 -0.71 8.14 -2.39 -0.02 -0.73 16 36 H 0.26 15.31 8.31 -92.71 -0.77 14.54 16 37 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 38 H 0.05 2.29 8.14 -2.39 -0.02 2.27 16 39 H 0.27 2.20 8.06 -2.91 -0.02 2.18 16 40 H 0.41 5.36 8.95 -92.71 -0.83 4.53 16 41 H 0.11 0.33 8.14 -2.39 -0.02 0.31 16 42 H 0.05 0.71 6.93 -2.39 -0.02 0.69 16 43 H 0.11 -0.30 8.14 -2.39 -0.02 -0.32 16 44 H 0.11 -0.15 8.14 -2.38 -0.02 -0.17 16 45 H 0.12 0.06 8.14 -2.39 -0.02 0.04 16 46 H 0.10 0.67 8.04 -2.39 -0.02 0.65 16 Total: -1.00 -87.47 378.35 5.11 -82.36 By element: Atomic # 1 Polarization: 6.08 SS G_CDS: 0.18 Total: 6.27 kcal Atomic # 6 Polarization: -7.02 SS G_CDS: 5.04 Total: -1.97 kcal Atomic # 7 Polarization: -69.94 SS G_CDS: -2.18 Total: -72.12 kcal Atomic # 8 Polarization: -60.65 SS G_CDS: 0.03 Total: -60.62 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 2.03 Total: 46.08 kcal Total: -87.47 5.11 -82.36 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649217008.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.906 kcal (2) G-P(sol) polarization free energy of solvation -87.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.365 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds