Wall clock time and date at job start Tue Mar 31 2020 19:25:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.47361 * 2 1 4 4 H 1.08996 * 109.47097 * 54.99909 * 3 2 1 5 5 C 1.53000 * 109.47176 * 175.00233 * 3 2 1 6 6 O 1.42900 * 109.46750 * 294.99498 * 3 2 1 7 7 C 1.35693 * 116.99624 * 149.99850 * 6 3 2 8 8 C 1.38899 * 119.61691 * 180.02562 * 7 6 3 9 9 C 1.39614 * 118.93458 * 179.97438 * 8 7 6 10 10 C 1.48073 * 120.89327 * 179.97438 * 9 8 7 11 11 O 1.21424 * 120.00005 * 354.25534 * 10 9 8 12 12 O 1.34667 * 119.99410 * 174.25180 * 10 9 8 13 13 C 1.45208 * 116.99756 * 183.64577 * 12 10 9 14 14 C 1.52996 * 109.47261 * 183.45080 * 13 12 10 15 15 C 1.50692 * 113.00116 * 289.38574 * 14 13 12 16 16 H 1.07995 * 120.00405 * 116.26607 * 15 14 13 17 17 C 1.37883 * 120.00065 * 296.26793 * 15 14 13 18 18 N 1.31519 * 119.99514 * 354.68161 * 17 15 14 19 19 Si 1.86798 * 120.00368 * 174.68480 * 17 15 14 20 20 H 1.48505 * 109.46964 * 359.97438 * 19 17 15 21 21 H 1.48500 * 109.47047 * 119.99605 * 19 17 15 22 22 H 1.48490 * 109.47122 * 239.99963 * 19 17 15 23 23 C 1.54038 * 113.81488 * 157.39684 * 14 13 12 24 24 O 1.44176 * 85.51626 * 223.19768 * 23 14 13 25 25 C 1.44174 * 93.34408 * 24.19429 * 24 23 14 26 26 C 1.40007 * 118.21030 * 0.02562 * 9 8 7 27 27 C 1.37969 * 119.12771 * 0.02562 * 26 9 8 28 28 N 1.31907 * 120.98247 * 359.71930 * 27 26 9 29 29 H 1.09000 * 109.46954 * 59.99938 * 1 2 3 30 30 H 1.08999 * 109.47450 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47144 * 300.00448 * 1 2 3 32 32 H 1.09008 * 109.47447 * 239.99637 * 2 1 3 33 33 H 1.09003 * 109.47177 * 119.99604 * 2 1 3 34 34 H 1.08999 * 109.47007 * 299.99451 * 5 3 2 35 35 H 1.08999 * 109.47272 * 180.02562 * 5 3 2 36 36 H 1.08996 * 109.47372 * 59.99844 * 5 3 2 37 37 H 1.07996 * 120.53632 * 0.02562 * 8 7 6 38 38 H 1.08997 * 109.46321 * 303.45117 * 13 12 10 39 39 H 1.09004 * 109.47086 * 63.44552 * 13 12 10 40 40 H 0.97001 * 119.99483 * 185.01874 * 18 17 15 41 41 H 1.08999 * 113.86474 * 337.34101 * 23 14 13 42 42 H 1.09000 * 113.86206 * 109.04814 * 23 14 13 43 43 H 1.08999 * 113.86695 * 221.66546 * 25 24 23 44 44 H 1.08996 * 113.86576 * 89.94961 * 25 24 23 45 45 H 1.08000 * 120.43414 * 179.97438 * 26 9 8 46 46 H 1.08002 * 119.51049 * 180.02562 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5649 1.4443 0.1257 6 8 1.6621 2.0813 -1.2211 7 6 1.4507 3.4209 -1.1757 8 6 1.0807 4.0970 -2.3313 9 6 0.8663 5.4751 -2.2683 10 6 0.4711 6.2390 -3.4736 11 8 0.4307 5.6884 -4.5551 12 8 0.1565 7.5443 -3.3703 13 6 -0.2999 8.2099 -4.5774 14 6 -0.5252 9.6950 -4.2869 15 6 -1.7231 9.9481 -3.4084 16 1 -1.5924 10.3864 -2.4301 17 6 -2.9861 9.6200 -3.8535 18 7 -3.1575 9.1842 -5.0825 19 14 -4.4538 9.7945 -2.7112 20 1 -3.9968 10.3004 -1.3919 21 1 -5.4271 10.7502 -3.2983 22 1 -5.1040 8.4712 -2.5351 23 6 -0.4692 10.5894 -5.5398 24 8 0.3090 11.4886 -4.7246 25 6 0.7453 10.4403 -3.8361 26 6 1.0360 6.1156 -1.0349 27 6 1.4064 5.3686 0.0644 28 7 1.5955 4.0667 -0.0318 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.8934 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.8532 0.9570 1.0571 35 1 3.9282 2.4719 0.1261 36 1 3.9995 0.9053 -0.7161 37 1 0.9599 3.5651 -3.2634 38 1 0.4530 8.1025 -5.3582 39 1 -1.2349 7.7587 -4.9098 40 1 -4.0527 9.0227 -5.4194 41 1 0.0873 10.1525 -6.3690 42 1 -1.4375 10.9910 -5.8385 43 1 0.7402 10.7237 -2.7836 44 1 1.6726 9.9579 -4.1451 45 1 0.8799 7.1805 -0.9454 46 1 1.5386 5.8563 1.0189 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001649233520.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:25:51 Heat of formation + Delta-G solvation = -104.432776 kcal Electronic energy + Delta-G solvation = -28844.177975 eV Core-core repulsion = 24700.902945 eV Total energy + Delta-G solvation = -4143.275030 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.95274 -39.87952 -39.12849 -38.29474 -35.86318 -34.48249 -33.06120 -32.73784 -30.69526 -30.00778 -29.89326 -26.06531 -25.43504 -24.97660 -24.35286 -23.71671 -23.32024 -21.74201 -20.39202 -19.10382 -18.63881 -17.44744 -16.73168 -16.13742 -16.08878 -15.97673 -15.64940 -15.52245 -14.98380 -14.78221 -14.51995 -14.39943 -14.25858 -14.16676 -13.97848 -13.90988 -13.44089 -12.94139 -12.68525 -12.42730 -12.17585 -12.09548 -12.02142 -11.94698 -11.71867 -11.39119 -11.05371 -11.01829 -10.89093 -10.81977 -10.53646 -10.46428 -10.09760 -10.02482 -9.84534 -9.64963 -9.40483 -9.14700 -8.77971 -8.62775 -8.39585 -6.23512 -4.28902 0.57906 1.05526 2.62928 2.82515 3.20640 3.24383 3.29915 3.33438 3.74637 4.10672 4.27809 4.44084 4.66192 4.68132 4.81564 4.83680 4.92818 4.94902 5.07224 5.10429 5.14486 5.28769 5.30543 5.47763 5.55363 5.62168 5.64560 5.73821 5.79205 5.88429 5.93902 5.98803 6.02073 6.09596 6.12423 6.24227 6.26184 6.32926 6.48984 6.86331 7.06480 7.11159 7.17515 7.23755 7.32105 7.65030 7.72942 8.10332 8.21155 8.69905 9.35878 10.83471 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.015710 B = 0.002721 C = 0.002548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1781.910346 B =10286.567866 C =10985.855629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.121 4.121 3 C 0.085 3.915 4 H 0.091 0.909 5 C -0.169 4.169 6 O -0.297 6.297 7 C 0.316 3.684 8 C -0.134 4.134 9 C -0.031 4.031 10 C 0.499 3.501 11 O -0.505 6.505 12 O -0.328 6.328 13 C 0.080 3.920 14 C 0.034 3.966 15 C -0.490 4.490 16 H 0.068 0.932 17 C 0.065 3.935 18 N -0.889 5.889 19 Si 0.899 3.101 20 H -0.270 1.270 21 H -0.283 1.283 22 H -0.283 1.283 23 C 0.051 3.949 24 O -0.388 6.388 25 C 0.032 3.968 26 C -0.155 4.155 27 C 0.131 3.869 28 N -0.525 5.525 29 H 0.061 0.939 30 H 0.056 0.944 31 H 0.054 0.946 32 H 0.072 0.928 33 H 0.081 0.919 34 H 0.070 0.930 35 H 0.062 0.938 36 H 0.061 0.939 37 H 0.153 0.847 38 H 0.041 0.959 39 H 0.094 0.906 40 H 0.266 0.734 41 H 0.048 0.952 42 H 0.097 0.903 43 H 0.079 0.921 44 H 0.054 0.946 45 H 0.158 0.842 46 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.876 -14.144 10.445 20.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.159 4.159 3 C 0.029 3.971 4 H 0.109 0.891 5 C -0.227 4.227 6 O -0.205 6.205 7 C 0.137 3.863 8 C -0.155 4.155 9 C -0.040 4.040 10 C 0.342 3.658 11 O -0.395 6.395 12 O -0.243 6.243 13 C 0.007 3.993 14 C 0.033 3.967 15 C -0.528 4.528 16 H 0.086 0.914 17 C -0.137 4.137 18 N -0.526 5.526 19 Si 0.727 3.273 20 H -0.195 1.195 21 H -0.209 1.209 22 H -0.209 1.209 23 C -0.026 4.026 24 O -0.307 6.307 25 C -0.045 4.045 26 C -0.175 4.175 27 C -0.024 4.024 28 N -0.249 5.249 29 H 0.080 0.920 30 H 0.075 0.925 31 H 0.073 0.927 32 H 0.091 0.909 33 H 0.099 0.901 34 H 0.088 0.912 35 H 0.081 0.919 36 H 0.080 0.920 37 H 0.171 0.829 38 H 0.060 0.940 39 H 0.112 0.888 40 H 0.076 0.924 41 H 0.066 0.934 42 H 0.116 0.884 43 H 0.097 0.903 44 H 0.072 0.928 45 H 0.176 0.824 46 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 9.972 -14.758 10.488 20.670 hybrid contribution -1.109 0.314 -0.276 1.185 sum 8.863 -14.444 10.213 19.786 Atomic orbital electron populations 1.21767 0.95144 1.01826 1.02482 1.21691 0.96863 0.94251 1.03058 1.22427 0.95200 0.93107 0.86399 0.89125 1.22217 0.95076 1.02966 1.02399 1.86301 1.82539 1.15749 1.35908 1.19484 0.92727 0.84825 0.89220 1.21095 1.02570 0.92853 0.99015 1.19407 0.99133 0.92454 0.93018 1.20903 0.74882 0.82342 0.87696 1.90800 1.49196 1.70614 1.28881 1.86519 1.74753 1.21077 1.41960 1.23698 0.98808 0.95400 0.81436 1.21116 0.93829 0.87576 0.94188 1.20676 0.89380 1.41003 1.01699 0.91371 1.24999 0.99156 0.94186 0.95404 1.69862 1.22804 1.44898 1.15046 0.86403 0.82086 0.77775 0.81066 1.19461 1.20850 1.20890 1.23918 0.94973 0.90208 0.93517 1.89496 1.68140 1.28869 1.44226 1.23997 0.96836 0.88553 0.95154 1.22441 1.00049 1.03092 0.91887 1.22426 0.93618 0.87522 0.98867 1.67103 1.19486 1.11901 1.26440 0.92029 0.92467 0.92734 0.90929 0.90077 0.91153 0.91886 0.91976 0.82900 0.94027 0.88823 0.92423 0.93365 0.88438 0.90306 0.92814 0.82427 0.81524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 9.81 37.16 0.36 -0.91 16 2 C -0.12 -0.93 5.64 -26.73 -0.15 -1.08 16 3 C 0.08 0.81 2.49 -26.73 -0.07 0.75 16 4 H 0.09 0.92 6.98 -51.93 -0.36 0.56 16 5 C -0.17 -1.40 9.53 37.16 0.35 -1.05 16 6 O -0.30 -3.65 9.30 -18.78 -0.17 -3.83 16 7 C 0.32 4.23 7.45 -17.16 -0.13 4.10 16 8 C -0.13 -1.96 9.61 -38.82 -0.37 -2.33 16 9 C -0.03 -0.49 5.91 -104.69 -0.62 -1.11 16 10 C 0.50 9.55 7.91 34.77 0.27 9.82 16 11 O -0.51 -10.77 16.18 -19.21 -0.31 -11.08 16 12 O -0.33 -6.77 9.38 -40.40 -0.38 -7.15 16 13 C 0.08 1.81 4.80 37.16 0.18 1.98 16 14 C 0.03 0.78 0.56 -154.58 -0.09 0.70 16 15 C -0.49 -12.56 8.27 -34.44 -0.28 -12.84 16 16 H 0.07 1.75 7.81 -52.49 -0.41 1.34 16 17 C 0.07 1.68 5.20 -17.82 -0.09 1.59 16 18 N -0.89 -23.53 11.26 55.43 0.62 -22.91 16 19 Si 0.90 20.36 29.54 -169.99 -5.02 15.34 16 20 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 21 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 22 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 23 C 0.05 1.17 7.94 37.61 0.30 1.47 16 24 O -0.39 -9.00 12.40 -35.23 -0.44 -9.43 16 25 C 0.03 0.66 8.19 37.61 0.31 0.97 16 26 C -0.15 -2.01 9.70 -39.02 -0.38 -2.39 16 27 C 0.13 1.46 11.16 -17.62 -0.20 1.26 16 28 N -0.52 -6.51 8.61 -13.38 -0.12 -6.63 16 29 H 0.06 0.61 7.82 -51.93 -0.41 0.20 16 30 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.07 0.55 8.14 -51.92 -0.42 0.13 16 33 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.15 2.21 7.75 -52.49 -0.41 1.80 16 38 H 0.04 0.89 7.85 -51.93 -0.41 0.49 16 39 H 0.09 2.39 6.75 -51.93 -0.35 2.04 16 40 H 0.27 6.77 8.32 -40.82 -0.34 6.43 16 41 H 0.05 1.01 7.97 -51.93 -0.41 0.60 16 42 H 0.10 2.40 7.58 -51.93 -0.39 2.01 16 43 H 0.08 1.57 8.08 -51.93 -0.42 1.15 16 44 H 0.05 1.01 8.10 -51.93 -0.42 0.59 16 45 H 0.16 1.94 7.72 -52.49 -0.41 1.53 16 46 H 0.17 1.28 8.06 -52.49 -0.42 0.85 16 LS Contribution 389.95 15.07 5.88 5.88 Total: -1.00 -29.05 389.95 -7.45 -36.50 By element: Atomic # 1 Polarization: 9.30 SS G_CDS: -6.91 Total: 2.38 kcal Atomic # 6 Polarization: 1.52 SS G_CDS: -0.60 Total: 0.92 kcal Atomic # 7 Polarization: -30.04 SS G_CDS: 0.51 Total: -29.54 kcal Atomic # 8 Polarization: -30.19 SS G_CDS: -1.30 Total: -31.49 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.02 Total: 15.34 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -29.05 -7.45 -36.50 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649233520.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.934 kcal (2) G-P(sol) polarization free energy of solvation -29.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.499 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds