Wall clock time and date at job start Tue Mar 31 2020 19:25:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.47361 * 2 1 4 4 H 1.08996 * 109.47097 * 54.99909 * 3 2 1 5 5 C 1.53000 * 109.47176 * 175.00233 * 3 2 1 6 6 O 1.42900 * 109.46750 * 294.99498 * 3 2 1 7 7 C 1.35693 * 116.99624 * 149.99850 * 6 3 2 8 8 C 1.38899 * 119.61691 * 180.02562 * 7 6 3 9 9 C 1.39614 * 118.93458 * 179.97438 * 8 7 6 10 10 C 1.48073 * 120.89327 * 179.97438 * 9 8 7 11 11 O 1.21424 * 120.00005 * 354.25534 * 10 9 8 12 12 O 1.34667 * 119.99410 * 174.25180 * 10 9 8 13 13 C 1.45208 * 116.99756 * 183.64577 * 12 10 9 14 14 C 1.52996 * 109.47261 * 183.45080 * 13 12 10 15 15 C 1.50692 * 113.00116 * 289.38574 * 14 13 12 16 16 H 1.07995 * 120.00405 * 116.26607 * 15 14 13 17 17 C 1.37883 * 120.00065 * 296.26793 * 15 14 13 18 18 N 1.31519 * 119.99514 * 354.68161 * 17 15 14 19 19 Si 1.86798 * 120.00368 * 174.68480 * 17 15 14 20 20 H 1.48505 * 109.46964 * 359.97438 * 19 17 15 21 21 H 1.48500 * 109.47047 * 119.99605 * 19 17 15 22 22 H 1.48490 * 109.47122 * 239.99963 * 19 17 15 23 23 C 1.54038 * 113.81488 * 157.39684 * 14 13 12 24 24 O 1.44176 * 85.51626 * 223.19768 * 23 14 13 25 25 C 1.44174 * 93.34408 * 24.19429 * 24 23 14 26 26 C 1.40007 * 118.21030 * 0.02562 * 9 8 7 27 27 C 1.37969 * 119.12771 * 0.02562 * 26 9 8 28 28 N 1.31907 * 120.98247 * 359.71930 * 27 26 9 29 29 H 1.09000 * 109.46954 * 59.99938 * 1 2 3 30 30 H 1.08999 * 109.47450 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47144 * 300.00448 * 1 2 3 32 32 H 1.09008 * 109.47447 * 239.99637 * 2 1 3 33 33 H 1.09003 * 109.47177 * 119.99604 * 2 1 3 34 34 H 1.08999 * 109.47007 * 299.99451 * 5 3 2 35 35 H 1.08999 * 109.47272 * 180.02562 * 5 3 2 36 36 H 1.08996 * 109.47372 * 59.99844 * 5 3 2 37 37 H 1.07996 * 120.53632 * 0.02562 * 8 7 6 38 38 H 1.08997 * 109.46321 * 303.45117 * 13 12 10 39 39 H 1.09004 * 109.47086 * 63.44552 * 13 12 10 40 40 H 0.97001 * 119.99483 * 185.01874 * 18 17 15 41 41 H 1.08999 * 113.86474 * 337.34101 * 23 14 13 42 42 H 1.09000 * 113.86206 * 109.04814 * 23 14 13 43 43 H 1.08999 * 113.86695 * 221.66546 * 25 24 23 44 44 H 1.08996 * 113.86576 * 89.94961 * 25 24 23 45 45 H 1.08000 * 120.43414 * 179.97438 * 26 9 8 46 46 H 1.08002 * 119.51049 * 180.02562 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5649 1.4443 0.1257 6 8 1.6621 2.0813 -1.2211 7 6 1.4507 3.4209 -1.1757 8 6 1.0807 4.0970 -2.3313 9 6 0.8663 5.4751 -2.2683 10 6 0.4711 6.2390 -3.4736 11 8 0.4307 5.6884 -4.5551 12 8 0.1565 7.5443 -3.3703 13 6 -0.2999 8.2099 -4.5774 14 6 -0.5252 9.6950 -4.2869 15 6 -1.7231 9.9481 -3.4084 16 1 -1.5924 10.3864 -2.4301 17 6 -2.9861 9.6200 -3.8535 18 7 -3.1575 9.1842 -5.0825 19 14 -4.4538 9.7945 -2.7112 20 1 -3.9968 10.3004 -1.3919 21 1 -5.4271 10.7502 -3.2983 22 1 -5.1040 8.4712 -2.5351 23 6 -0.4692 10.5894 -5.5398 24 8 0.3090 11.4886 -4.7246 25 6 0.7453 10.4403 -3.8361 26 6 1.0360 6.1156 -1.0349 27 6 1.4064 5.3686 0.0644 28 7 1.5955 4.0667 -0.0318 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.8934 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.8532 0.9570 1.0571 35 1 3.9282 2.4719 0.1261 36 1 3.9995 0.9053 -0.7161 37 1 0.9599 3.5651 -3.2634 38 1 0.4530 8.1025 -5.3582 39 1 -1.2349 7.7587 -4.9098 40 1 -4.0527 9.0227 -5.4194 41 1 0.0873 10.1525 -6.3690 42 1 -1.4375 10.9910 -5.8385 43 1 0.7402 10.7237 -2.7836 44 1 1.6726 9.9579 -4.1451 45 1 0.8799 7.1805 -0.9454 46 1 1.5386 5.8563 1.0189 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001649233520.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:25:51 Heat of formation + Delta-G solvation = -121.325246 kcal Electronic energy + Delta-G solvation = -28844.910487 eV Core-core repulsion = 24700.902945 eV Total energy + Delta-G solvation = -4144.007543 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.08095 -41.40065 -40.75428 -39.30093 -37.50154 -35.23103 -34.94580 -33.91615 -31.88141 -31.48862 -30.71821 -27.68243 -27.17615 -26.65749 -25.56325 -24.84210 -24.28156 -22.78680 -21.45394 -20.91134 -19.85281 -18.74210 -18.29687 -17.68731 -17.45439 -17.20612 -16.89858 -16.76039 -16.67484 -16.20739 -16.14700 -15.89840 -15.53834 -15.06584 -14.96656 -14.84401 -14.50565 -14.19745 -14.03217 -13.86011 -13.58667 -13.54177 -13.04059 -12.88902 -12.87669 -12.68557 -12.62456 -12.36134 -12.10814 -12.03335 -11.86817 -11.74200 -11.60803 -11.50155 -11.27314 -11.14403 -10.95064 -10.77661 -10.68650 -10.23568 -9.61033 -8.19343 -6.29860 -0.60751 0.04585 1.33601 1.40380 1.44564 1.50131 1.54356 2.06904 2.39690 2.66336 2.99251 3.18986 3.21624 3.40611 3.75117 3.80968 3.89118 3.99453 4.00845 4.17442 4.20574 4.22393 4.43034 4.44554 4.47805 4.54558 4.56601 4.60849 4.65876 4.68520 4.76547 4.80867 5.01267 5.01459 5.04520 5.10752 5.14795 5.20858 5.22337 5.34567 5.37442 5.45981 5.47885 5.53789 5.73284 6.19404 6.21188 6.61482 6.65880 6.71379 7.37076 8.86540 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.015710 B = 0.002721 C = 0.002548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1781.910346 B =10286.567866 C =10985.855629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.117 4.117 3 C 0.077 3.923 4 H 0.087 0.913 5 C -0.165 4.165 6 O -0.308 6.308 7 C 0.317 3.683 8 C -0.147 4.147 9 C -0.048 4.048 10 C 0.498 3.502 11 O -0.535 6.535 12 O -0.329 6.329 13 C 0.092 3.908 14 C 0.020 3.980 15 C -0.503 4.503 16 H 0.064 0.936 17 C 0.023 3.977 18 N -0.911 5.911 19 Si 0.953 3.047 20 H -0.262 1.262 21 H -0.281 1.281 22 H -0.286 1.286 23 C 0.054 3.946 24 O -0.402 6.402 25 C 0.042 3.958 26 C -0.152 4.152 27 C 0.147 3.853 28 N -0.521 5.521 29 H 0.038 0.962 30 H 0.070 0.930 31 H 0.054 0.946 32 H 0.072 0.928 33 H 0.107 0.893 34 H 0.093 0.907 35 H 0.049 0.951 36 H 0.061 0.939 37 H 0.144 0.856 38 H 0.049 0.951 39 H 0.059 0.941 40 H 0.265 0.735 41 H 0.068 0.932 42 H 0.074 0.926 43 H 0.090 0.910 44 H 0.079 0.921 45 H 0.167 0.833 46 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.013 -14.840 13.100 22.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.155 4.155 3 C 0.022 3.978 4 H 0.105 0.895 5 C -0.222 4.222 6 O -0.216 6.216 7 C 0.138 3.862 8 C -0.169 4.169 9 C -0.057 4.057 10 C 0.343 3.657 11 O -0.426 6.426 12 O -0.244 6.244 13 C 0.018 3.982 14 C 0.019 3.981 15 C -0.541 4.541 16 H 0.082 0.918 17 C -0.177 4.177 18 N -0.549 5.549 19 Si 0.779 3.221 20 H -0.186 1.186 21 H -0.207 1.207 22 H -0.212 1.212 23 C -0.023 4.023 24 O -0.321 6.321 25 C -0.034 4.034 26 C -0.172 4.172 27 C -0.009 4.009 28 N -0.245 5.245 29 H 0.057 0.943 30 H 0.089 0.911 31 H 0.073 0.927 32 H 0.091 0.909 33 H 0.125 0.875 34 H 0.112 0.888 35 H 0.068 0.932 36 H 0.080 0.920 37 H 0.162 0.838 38 H 0.067 0.933 39 H 0.078 0.922 40 H 0.074 0.926 41 H 0.086 0.914 42 H 0.092 0.908 43 H 0.108 0.892 44 H 0.097 0.903 45 H 0.185 0.815 46 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges 11.125 -15.467 13.155 23.153 hybrid contribution -1.414 0.462 -1.036 1.813 sum 9.711 -15.005 12.119 21.594 Atomic orbital electron populations 1.21769 0.95753 1.02383 1.01360 1.21729 0.96276 0.93151 1.04297 1.22719 0.96164 0.93799 0.85125 0.89497 1.22194 0.93920 1.02408 1.03669 1.86300 1.82396 1.15244 1.37641 1.19470 0.92349 0.85361 0.88991 1.21034 1.03716 0.92664 0.99440 1.19246 1.01308 0.92604 0.92531 1.21536 0.73764 0.81726 0.88640 1.90776 1.50591 1.70878 1.30392 1.86510 1.74929 1.22037 1.40920 1.23333 0.97499 0.95016 0.82371 1.21167 0.94570 0.88022 0.94355 1.20924 0.90453 1.40797 1.01878 0.91758 1.25646 1.01413 0.94168 0.96494 1.69963 1.23040 1.45677 1.16245 0.85567 0.79352 0.77400 0.79810 1.18596 1.20732 1.21185 1.23842 0.94368 0.89989 0.94143 1.89470 1.68249 1.29711 1.44714 1.24097 0.96612 0.87173 0.95561 1.22612 0.99660 1.03661 0.91262 1.23099 0.91124 0.86869 0.99767 1.67256 1.19105 1.12461 1.25697 0.94272 0.91115 0.92693 0.90936 0.87493 0.88811 0.93210 0.91955 0.83842 0.93269 0.92222 0.92619 0.91407 0.90757 0.89207 0.90285 0.81539 0.77226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.37 9.81 71.98 0.71 -1.66 16 2 C -0.12 -1.56 5.64 30.59 0.17 -1.39 16 3 C 0.08 1.35 2.49 30.60 0.08 1.43 16 4 H 0.09 1.59 6.98 -2.39 -0.02 1.57 16 5 C -0.16 -2.39 9.53 71.98 0.69 -1.70 16 6 O -0.31 -7.38 9.30 -90.12 -0.84 -8.22 16 7 C 0.32 8.22 7.45 84.80 0.63 8.85 16 8 C -0.15 -4.34 9.61 22.76 0.22 -4.12 16 9 C -0.05 -1.49 5.91 -19.91 -0.12 -1.61 16 10 C 0.50 19.39 7.91 70.43 0.56 19.94 16 11 O -0.54 -23.58 16.18 20.08 0.33 -23.26 16 12 O -0.33 -13.60 9.38 -55.76 -0.52 -14.12 16 13 C 0.09 4.20 4.80 71.98 0.35 4.54 16 14 C 0.02 0.91 0.56 -52.23 -0.03 0.88 16 15 C -0.50 -25.78 8.27 25.60 0.21 -25.57 16 16 H 0.06 3.27 7.81 -2.91 -0.02 3.24 16 17 C 0.02 1.19 5.20 84.66 0.44 1.64 16 18 N -0.91 -49.23 11.26 21.45 0.24 -48.99 16 19 Si 0.95 41.82 29.54 68.60 2.03 43.85 16 20 H -0.26 -11.05 7.11 99.48 0.71 -10.34 16 21 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 22 H -0.29 -12.58 7.11 99.48 0.71 -11.87 16 23 C 0.05 2.47 7.94 72.28 0.57 3.04 16 24 O -0.40 -18.26 12.40 -148.98 -1.85 -20.10 16 25 C 0.04 1.69 8.19 72.28 0.59 2.28 16 26 C -0.15 -3.67 9.70 22.63 0.22 -3.45 16 27 C 0.15 2.83 11.16 84.62 0.94 3.77 16 28 N -0.52 -11.79 8.61 -309.14 -2.66 -14.45 16 29 H 0.04 0.76 7.82 -2.39 -0.02 0.74 16 30 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.07 0.98 8.14 -2.38 -0.02 0.96 16 33 H 0.11 0.90 8.14 -2.39 -0.02 0.88 16 34 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 35 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 36 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 37 H 0.14 4.37 7.75 -2.91 -0.02 4.35 16 38 H 0.05 2.13 7.85 -2.39 -0.02 2.11 16 39 H 0.06 3.14 6.75 -2.39 -0.02 3.12 16 40 H 0.26 13.78 8.32 -92.71 -0.77 13.00 16 41 H 0.07 2.81 7.97 -2.39 -0.02 2.80 16 42 H 0.07 3.74 7.58 -2.39 -0.02 3.72 16 43 H 0.09 3.40 8.08 -2.39 -0.02 3.38 16 44 H 0.08 2.78 8.10 -2.39 -0.02 2.77 16 45 H 0.17 3.72 7.72 -2.91 -0.02 3.70 16 46 H 0.21 2.20 8.06 -2.91 -0.02 2.17 16 Total: -1.00 -63.31 389.95 3.93 -59.38 By element: Atomic # 1 Polarization: 18.08 SS G_CDS: 0.98 Total: 19.05 kcal Atomic # 6 Polarization: 0.64 SS G_CDS: 6.23 Total: 6.87 kcal Atomic # 7 Polarization: -61.02 SS G_CDS: -2.42 Total: -63.44 kcal Atomic # 8 Polarization: -62.82 SS G_CDS: -2.88 Total: -65.70 kcal Atomic # 14 Polarization: 41.82 SS G_CDS: 2.03 Total: 43.85 kcal Total: -63.31 3.93 -59.38 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649233520.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.946 kcal (2) G-P(sol) polarization free energy of solvation -63.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds