Wall clock time and date at job start Tue Mar 31 2020 19:18:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.47121 * 2 1 4 4 H 1.09002 * 115.55911 * 29.29701 * 3 2 1 5 5 C 1.53000 * 117.50223 * 243.61012 * 3 2 1 6 6 C 1.52997 * 117.49889 * 174.98273 * 3 2 1 7 7 H 1.08999 * 117.49685 * 0.02562 * 6 3 2 8 8 C 1.50696 * 117.52180 * 214.96954 * 6 3 2 9 9 O 1.21290 * 119.99779 * 359.97438 * 8 6 3 10 10 N 1.34773 * 120.00368 * 179.97438 * 8 6 3 11 11 C 1.47061 * 120.80563 * 180.02562 * 10 8 6 12 12 C 1.53295 * 108.61498 * 115.26093 * 11 10 8 13 13 C 1.50976 * 108.96929 * 45.02506 * 12 11 10 14 14 S 1.75961 * 126.03652 * 162.19131 * 13 12 11 15 15 C 1.70898 * 90.30942 * 179.69149 * 14 13 12 16 16 C 1.50703 * 124.92783 * 180.13543 * 15 14 13 17 17 N 1.46494 * 109.46969 * 269.95052 * 16 15 14 18 18 C 1.36935 * 119.99883 * 179.97438 * 17 16 15 19 19 H 1.07993 * 120.00295 * 359.97438 * 18 17 16 20 20 C 1.38813 * 120.00081 * 179.97438 * 18 17 16 21 21 N 1.31625 * 120.00037 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 120.00274 * 179.97438 * 20 18 17 23 23 H 1.48506 * 109.47009 * 89.99986 * 22 20 18 24 24 H 1.48496 * 109.47284 * 210.00150 * 22 20 18 25 25 H 1.48507 * 109.46993 * 330.00272 * 22 20 18 26 26 N 1.28682 * 110.14802 * 0.11047 * 15 14 13 27 27 C 1.32435 * 117.82077 * 0.11074 * 26 15 14 28 28 C 1.47039 * 120.79707 * 359.72807 * 10 8 6 29 29 H 1.08998 * 109.47022 * 300.00082 * 1 2 3 30 30 H 1.09004 * 109.46935 * 59.99813 * 1 2 3 31 31 H 1.08997 * 109.47008 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.46714 * 240.00621 * 2 1 3 33 33 H 1.08994 * 109.46846 * 120.00349 * 2 1 3 34 34 H 1.08990 * 117.49990 * 145.01974 * 5 3 2 35 35 H 1.09004 * 117.49237 * 359.97438 * 5 3 2 36 36 H 1.09000 * 109.61628 * 235.00025 * 11 10 8 37 37 H 1.09001 * 109.61410 * 355.34787 * 11 10 8 38 38 H 1.08998 * 109.55503 * 164.87395 * 12 11 10 39 39 H 1.09005 * 109.55193 * 285.07702 * 12 11 10 40 40 H 1.09005 * 109.46677 * 29.94367 * 16 15 14 41 41 H 1.08997 * 109.47448 * 149.94492 * 16 15 14 42 42 H 0.96996 * 120.00101 * 359.97438 * 17 16 15 43 43 H 0.96992 * 119.99889 * 180.02562 * 21 20 18 44 44 H 1.08998 * 109.81354 * 344.83756 * 28 10 8 45 45 H 1.08999 * 109.81755 * 105.75013 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.3883 2.1718 0.4812 5 6 2.8443 1.9076 -1.2157 6 6 3.5501 1.6579 0.1187 7 1 4.1803 0.7719 0.1963 8 6 4.0232 2.8620 0.8915 9 8 3.2162 3.6174 1.3909 10 7 5.3428 3.0996 1.0278 11 6 5.8239 4.2690 1.7787 12 6 6.5844 3.7772 3.0155 13 6 7.5065 2.6527 2.6096 14 16 8.8813 2.0572 3.5324 15 6 9.2023 0.8948 2.3215 16 6 10.3268 -0.1077 2.3641 17 7 11.5172 0.4667 1.7325 18 6 12.6716 -0.2657 1.6541 19 1 12.7045 -1.2666 2.0583 20 6 13.7995 0.2783 1.0551 21 7 13.7595 1.4984 0.5629 22 14 15.3744 -0.7205 0.9488 23 1 15.3827 -1.4987 -0.3160 24 1 16.5436 0.1946 0.9747 25 1 15.4489 -1.6516 2.1034 26 7 8.3443 0.9993 1.3681 27 6 7.4127 1.9345 1.4748 28 6 6.3362 2.1923 0.4347 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8933 -0.5137 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 2.7216 2.9426 -1.5342 35 1 3.0104 1.1856 -2.0153 36 1 6.4906 4.8588 1.1497 37 1 4.9757 4.8803 2.0867 38 1 7.1698 4.5963 3.4333 39 1 5.8750 3.4183 3.7612 40 1 10.5509 -0.3583 3.4010 41 1 10.0303 -1.0093 1.8283 42 1 11.4878 1.3658 1.3698 43 1 14.5475 1.8784 0.1440 44 1 5.8590 1.2524 0.1571 45 1 6.7811 2.6560 -0.4457 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691804677.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:18:39 Heat of formation + Delta-G solvation = 43.306309 kcal Electronic energy + Delta-G solvation = -25732.430882 eV Core-core repulsion = 22070.607922 eV Total energy + Delta-G solvation = -3661.822961 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.81435 -39.56220 -37.61988 -36.35674 -34.69084 -32.88363 -32.14947 -31.58997 -29.83792 -26.84060 -26.61442 -24.77808 -24.08212 -23.58836 -22.58199 -21.70656 -20.80478 -19.54373 -18.27090 -18.15581 -17.28931 -16.99300 -16.46971 -15.67971 -15.21101 -14.99024 -14.95624 -14.58056 -14.49371 -14.21209 -13.73695 -13.61116 -13.42262 -13.10082 -12.98540 -12.80153 -12.60937 -12.47953 -12.43558 -12.26020 -11.83316 -11.66566 -11.47661 -11.36806 -11.08673 -10.98439 -10.85968 -10.61935 -10.33248 -10.17382 -10.02026 -9.85605 -9.35126 -9.10753 -8.96242 -8.92192 -8.45097 -7.05649 -5.83353 -3.14973 0.86615 1.51726 1.97590 2.21719 2.58964 2.88931 3.40707 3.45549 3.47380 3.48186 3.97791 4.18269 4.40094 4.42274 4.54819 4.59400 4.71860 4.76293 4.84096 4.96589 5.00963 5.03975 5.10110 5.23039 5.26373 5.33781 5.37900 5.43543 5.49412 5.52895 5.61055 5.65901 5.68414 5.74861 5.77501 5.80992 5.96307 6.04651 6.12536 6.16254 6.39191 6.43951 7.08104 7.62109 7.88089 7.98532 8.32245 9.44699 9.95529 10.31927 11.38910 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.016973 B = 0.002374 C = 0.002225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1649.325269 B =11790.534007 C =12583.891670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.097 4.097 3 C -0.116 4.116 4 H 0.117 0.883 5 C -0.145 4.145 6 C -0.197 4.197 7 H 0.127 0.873 8 C 0.553 3.447 9 O -0.542 6.542 10 N -0.607 5.607 11 C 0.115 3.885 12 C -0.053 4.053 13 C -0.238 4.238 14 S 0.136 5.864 15 C 0.076 3.924 16 C 0.224 3.776 17 N -0.723 5.723 18 C -0.245 4.245 19 H 0.075 0.925 20 C -0.010 4.010 21 N -0.930 5.930 22 Si 0.912 3.088 23 H -0.288 1.288 24 H -0.291 1.291 25 H -0.280 1.280 26 N -0.464 5.464 27 C 0.046 3.954 28 C 0.193 3.807 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.055 0.945 32 H 0.067 0.933 33 H 0.068 0.932 34 H 0.099 0.901 35 H 0.106 0.894 36 H 0.079 0.921 37 H 0.103 0.897 38 H 0.090 0.910 39 H 0.082 0.918 40 H 0.043 0.957 41 H 0.054 0.946 42 H 0.387 0.613 43 H 0.257 0.743 44 H 0.105 0.895 45 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.890 2.424 0.954 24.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.134 4.134 3 C -0.135 4.135 4 H 0.135 0.865 5 C -0.183 4.183 6 C -0.217 4.217 7 H 0.145 0.855 8 C 0.342 3.658 9 O -0.419 6.419 10 N -0.340 5.340 11 C -0.009 4.009 12 C -0.093 4.093 13 C -0.359 4.359 14 S 0.395 5.605 15 C -0.203 4.203 16 C 0.094 3.906 17 N -0.369 5.369 18 C -0.376 4.376 19 H 0.093 0.907 20 C -0.206 4.206 21 N -0.577 5.577 22 Si 0.743 3.257 23 H -0.216 1.216 24 H -0.217 1.217 25 H -0.206 1.206 26 N -0.178 5.178 27 C -0.088 4.088 28 C 0.068 3.932 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.085 0.915 33 H 0.087 0.913 34 H 0.118 0.882 35 H 0.124 0.876 36 H 0.097 0.903 37 H 0.121 0.879 38 H 0.108 0.892 39 H 0.101 0.899 40 H 0.060 0.940 41 H 0.071 0.929 42 H 0.221 0.779 43 H 0.067 0.933 44 H 0.123 0.877 45 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -23.628 2.571 1.792 23.835 hybrid contribution 0.710 -0.125 -0.831 1.100 sum -22.918 2.445 0.961 23.068 Atomic orbital electron populations 1.21736 0.95137 1.01691 1.02088 1.21170 0.96292 0.93562 1.02367 1.22488 0.91140 0.98808 1.01022 0.86452 1.23120 1.01646 1.03258 0.90252 1.22370 0.97886 0.99027 1.02452 0.85511 1.19609 0.81234 0.85484 0.79436 1.90676 1.53196 1.48854 1.49163 1.47981 1.05412 1.26430 1.54189 1.21664 0.99367 0.87480 0.92347 1.20452 0.95928 0.94698 0.98222 1.25836 1.03261 1.06364 1.00481 1.83954 1.22089 1.29772 1.24709 1.27309 0.99760 1.00986 0.92278 1.19340 0.82407 0.91157 0.97720 1.42263 1.06660 1.17587 1.70392 1.19196 0.88261 0.97600 1.32505 0.90734 1.24786 0.98316 0.96685 1.00848 1.69679 1.29490 1.14667 1.43888 0.86124 0.82903 0.78876 0.77843 1.21560 1.21704 1.20596 1.65780 1.03907 1.20781 1.27316 1.20767 0.97813 0.94259 0.95962 1.20189 0.86143 0.94534 0.92343 0.92538 0.92526 0.92573 0.91481 0.91340 0.88236 0.87558 0.90308 0.87912 0.89162 0.89947 0.93957 0.92864 0.77943 0.93344 0.87682 0.88957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.91 9.87 37.16 0.37 -0.54 16 2 C -0.10 -0.66 6.22 -26.73 -0.17 -0.83 16 3 C -0.12 -0.97 5.25 -90.62 -0.48 -1.45 16 4 H 0.12 1.14 7.60 -51.93 -0.39 0.75 16 5 C -0.15 -1.10 9.88 -26.73 -0.26 -1.37 16 6 C -0.20 -1.81 4.96 -91.77 -0.46 -2.27 16 7 H 0.13 1.07 6.47 -51.93 -0.34 0.73 16 8 C 0.55 6.56 7.49 -10.99 -0.08 6.48 16 9 O -0.54 -7.90 15.69 5.55 0.09 -7.81 16 10 N -0.61 -6.87 2.92 -173.29 -0.51 -7.37 16 11 C 0.12 1.20 6.41 -3.58 -0.02 1.18 16 12 C -0.05 -0.57 6.44 -27.60 -0.18 -0.74 16 13 C -0.24 -3.32 6.43 -35.45 -0.23 -3.55 16 14 S 0.14 2.08 23.17 -107.50 -2.49 -0.41 16 15 C 0.08 1.39 6.75 -13.60 -0.09 1.30 16 16 C 0.22 4.58 6.84 -5.20 -0.04 4.54 16 17 N -0.72 -18.37 5.59 -61.09 -0.34 -18.71 16 18 C -0.24 -6.74 9.99 -15.06 -0.15 -6.89 16 19 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 20 C -0.01 -0.28 5.50 -17.43 -0.10 -0.37 16 21 N -0.93 -27.96 13.06 55.49 0.72 -27.23 16 22 Si 0.91 22.07 29.55 -169.99 -5.02 17.04 16 23 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 24 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 25 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 26 N -0.46 -8.32 10.51 -7.42 -0.08 -8.40 16 27 C 0.05 0.68 6.85 -83.02 -0.57 0.12 16 28 C 0.19 2.25 6.63 -4.31 -0.03 2.22 16 29 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 30 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 31 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.07 0.41 7.87 -51.93 -0.41 0.00 16 33 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.10 0.79 8.14 -51.93 -0.42 0.36 16 35 H 0.11 0.64 8.03 -51.93 -0.42 0.22 16 36 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.10 1.06 7.01 -51.93 -0.36 0.69 16 38 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 42 H 0.39 10.56 7.66 -40.82 -0.31 10.25 16 43 H 0.26 7.44 8.31 -40.82 -0.34 7.11 16 44 H 0.11 1.07 5.66 -51.93 -0.29 0.78 16 45 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 383.32 15.07 5.78 5.78 Total: -1.00 -32.59 383.32 -11.05 -43.64 By element: Atomic # 1 Polarization: 12.37 SS G_CDS: -6.72 Total: 5.64 kcal Atomic # 6 Polarization: 0.30 SS G_CDS: -2.48 Total: -2.18 kcal Atomic # 7 Polarization: -61.51 SS G_CDS: -0.20 Total: -61.71 kcal Atomic # 8 Polarization: -7.90 SS G_CDS: 0.09 Total: -7.81 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.04 kcal Atomic # 16 Polarization: 2.08 SS G_CDS: -2.49 Total: -0.41 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -32.59 -11.05 -43.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691804677.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.950 kcal (2) G-P(sol) polarization free energy of solvation -32.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.644 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds