Wall clock time and date at job start Tue Mar 31 2020 19:18:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.47121 * 2 1 4 4 H 1.09002 * 115.55911 * 29.29701 * 3 2 1 5 5 C 1.53000 * 117.50223 * 243.61012 * 3 2 1 6 6 C 1.52997 * 117.49889 * 174.98273 * 3 2 1 7 7 H 1.08999 * 117.49685 * 0.02562 * 6 3 2 8 8 C 1.50696 * 117.52180 * 214.96954 * 6 3 2 9 9 O 1.21290 * 119.99779 * 359.97438 * 8 6 3 10 10 N 1.34773 * 120.00368 * 179.97438 * 8 6 3 11 11 C 1.47061 * 120.80563 * 180.02562 * 10 8 6 12 12 C 1.53295 * 108.61498 * 115.26093 * 11 10 8 13 13 C 1.50976 * 108.96929 * 45.02506 * 12 11 10 14 14 S 1.75961 * 126.03652 * 162.19131 * 13 12 11 15 15 C 1.70898 * 90.30942 * 179.69149 * 14 13 12 16 16 C 1.50703 * 124.92783 * 180.13543 * 15 14 13 17 17 N 1.46494 * 109.46969 * 269.95052 * 16 15 14 18 18 C 1.36935 * 119.99883 * 179.97438 * 17 16 15 19 19 H 1.07993 * 120.00295 * 359.97438 * 18 17 16 20 20 C 1.38813 * 120.00081 * 179.97438 * 18 17 16 21 21 N 1.31625 * 120.00037 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 120.00274 * 179.97438 * 20 18 17 23 23 H 1.48506 * 109.47009 * 89.99986 * 22 20 18 24 24 H 1.48496 * 109.47284 * 210.00150 * 22 20 18 25 25 H 1.48507 * 109.46993 * 330.00272 * 22 20 18 26 26 N 1.28682 * 110.14802 * 0.11047 * 15 14 13 27 27 C 1.32435 * 117.82077 * 0.11074 * 26 15 14 28 28 C 1.47039 * 120.79707 * 359.72807 * 10 8 6 29 29 H 1.08998 * 109.47022 * 300.00082 * 1 2 3 30 30 H 1.09004 * 109.46935 * 59.99813 * 1 2 3 31 31 H 1.08997 * 109.47008 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.46714 * 240.00621 * 2 1 3 33 33 H 1.08994 * 109.46846 * 120.00349 * 2 1 3 34 34 H 1.08990 * 117.49990 * 145.01974 * 5 3 2 35 35 H 1.09004 * 117.49237 * 359.97438 * 5 3 2 36 36 H 1.09000 * 109.61628 * 235.00025 * 11 10 8 37 37 H 1.09001 * 109.61410 * 355.34787 * 11 10 8 38 38 H 1.08998 * 109.55503 * 164.87395 * 12 11 10 39 39 H 1.09005 * 109.55193 * 285.07702 * 12 11 10 40 40 H 1.09005 * 109.46677 * 29.94367 * 16 15 14 41 41 H 1.08997 * 109.47448 * 149.94492 * 16 15 14 42 42 H 0.96996 * 120.00101 * 359.97438 * 17 16 15 43 43 H 0.96992 * 119.99889 * 180.02562 * 21 20 18 44 44 H 1.08998 * 109.81354 * 344.83756 * 28 10 8 45 45 H 1.08999 * 109.81755 * 105.75013 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.3883 2.1718 0.4812 5 6 2.8443 1.9076 -1.2157 6 6 3.5501 1.6579 0.1187 7 1 4.1803 0.7719 0.1963 8 6 4.0232 2.8620 0.8915 9 8 3.2162 3.6174 1.3909 10 7 5.3428 3.0996 1.0278 11 6 5.8239 4.2690 1.7787 12 6 6.5844 3.7772 3.0155 13 6 7.5065 2.6527 2.6096 14 16 8.8813 2.0572 3.5324 15 6 9.2023 0.8948 2.3215 16 6 10.3268 -0.1077 2.3641 17 7 11.5172 0.4667 1.7325 18 6 12.6716 -0.2657 1.6541 19 1 12.7045 -1.2666 2.0583 20 6 13.7995 0.2783 1.0551 21 7 13.7595 1.4984 0.5629 22 14 15.3744 -0.7205 0.9488 23 1 15.3827 -1.4987 -0.3160 24 1 16.5436 0.1946 0.9747 25 1 15.4489 -1.6516 2.1034 26 7 8.3443 0.9993 1.3681 27 6 7.4127 1.9345 1.4748 28 6 6.3362 2.1923 0.4347 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8933 -0.5137 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 2.7216 2.9426 -1.5342 35 1 3.0104 1.1856 -2.0153 36 1 6.4906 4.8588 1.1497 37 1 4.9757 4.8803 2.0867 38 1 7.1698 4.5963 3.4333 39 1 5.8750 3.4183 3.7612 40 1 10.5509 -0.3583 3.4010 41 1 10.0303 -1.0093 1.8283 42 1 11.4878 1.3658 1.3698 43 1 14.5475 1.8784 0.1440 44 1 5.8590 1.2524 0.1571 45 1 6.7811 2.6560 -0.4457 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691804677.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:18:38 Heat of formation + Delta-G solvation = 23.801043 kcal Electronic energy + Delta-G solvation = -25733.276694 eV Core-core repulsion = 22070.607922 eV Total energy + Delta-G solvation = -3662.668772 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.78568 -40.65191 -38.41879 -37.42236 -36.45789 -33.87575 -33.39160 -32.72047 -31.20065 -28.44639 -27.56105 -25.65409 -25.36485 -24.65494 -23.72826 -22.98037 -21.44743 -20.55161 -19.58624 -19.27111 -18.94052 -18.02658 -17.39911 -16.83362 -16.66501 -16.04686 -15.97833 -15.65310 -15.43859 -15.24184 -15.12457 -14.92816 -14.79378 -14.09439 -14.05264 -13.84809 -13.82009 -13.40768 -13.32109 -13.08765 -12.97718 -12.97343 -12.77629 -12.47174 -12.17132 -12.16358 -12.12803 -11.91585 -11.88192 -11.28531 -11.05265 -11.03636 -10.83328 -10.62349 -10.24515 -9.92787 -9.64542 -9.10470 -7.97384 -5.29647 -0.38309 0.30240 0.73032 1.34229 1.49026 1.51372 1.59257 1.63272 1.73178 2.55657 2.78400 2.93634 3.32209 3.37479 3.63116 3.71440 3.78780 3.81255 3.87928 4.00838 4.06457 4.17981 4.21929 4.27367 4.33154 4.47662 4.49411 4.54621 4.57099 4.68010 4.76260 4.78481 4.82101 4.84735 4.92812 4.96697 5.12930 5.16256 5.22051 5.24879 5.30374 5.47416 5.49629 6.17505 6.20787 6.71411 6.99047 7.28593 7.94369 8.21572 9.25891 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.016973 B = 0.002374 C = 0.002225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1649.325269 B =11790.534007 C =12583.891670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.094 4.094 3 C -0.117 4.117 4 H 0.100 0.900 5 C -0.131 4.131 6 C -0.207 4.207 7 H 0.137 0.863 8 C 0.551 3.449 9 O -0.574 6.574 10 N -0.606 5.606 11 C 0.113 3.887 12 C -0.050 4.050 13 C -0.226 4.226 14 S 0.163 5.837 15 C 0.038 3.962 16 C 0.227 3.773 17 N -0.736 5.736 18 C -0.248 4.248 19 H 0.085 0.915 20 C -0.073 4.073 21 N -0.969 5.969 22 Si 0.980 3.020 23 H -0.287 1.287 24 H -0.296 1.296 25 H -0.265 1.265 26 N -0.479 5.479 27 C 0.027 3.973 28 C 0.199 3.801 29 H 0.049 0.951 30 H 0.059 0.941 31 H 0.064 0.936 32 H 0.079 0.921 33 H 0.064 0.936 34 H 0.095 0.905 35 H 0.128 0.872 36 H 0.089 0.911 37 H 0.105 0.895 38 H 0.111 0.889 39 H 0.089 0.911 40 H 0.057 0.943 41 H 0.050 0.950 42 H 0.373 0.627 43 H 0.252 0.748 44 H 0.120 0.880 45 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.758 1.919 0.963 24.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.131 4.131 3 C -0.136 4.136 4 H 0.118 0.882 5 C -0.168 4.168 6 C -0.228 4.228 7 H 0.155 0.845 8 C 0.341 3.659 9 O -0.453 6.453 10 N -0.338 5.338 11 C -0.011 4.011 12 C -0.090 4.090 13 C -0.348 4.348 14 S 0.421 5.579 15 C -0.240 4.240 16 C 0.098 3.902 17 N -0.380 5.380 18 C -0.379 4.379 19 H 0.103 0.897 20 C -0.266 4.266 21 N -0.619 5.619 22 Si 0.808 3.192 23 H -0.214 1.214 24 H -0.222 1.222 25 H -0.189 1.189 26 N -0.195 5.195 27 C -0.106 4.106 28 C 0.074 3.926 29 H 0.068 0.932 30 H 0.078 0.922 31 H 0.083 0.917 32 H 0.098 0.902 33 H 0.083 0.917 34 H 0.114 0.886 35 H 0.146 0.854 36 H 0.107 0.893 37 H 0.123 0.877 38 H 0.130 0.870 39 H 0.107 0.893 40 H 0.075 0.925 41 H 0.068 0.932 42 H 0.205 0.795 43 H 0.061 0.939 44 H 0.138 0.862 45 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -24.512 2.022 1.824 24.663 hybrid contribution 0.840 0.090 -0.769 1.143 sum -23.672 2.111 1.054 23.789 Atomic orbital electron populations 1.21734 0.94694 1.02225 1.01959 1.21175 0.96671 0.92489 1.02764 1.22485 0.90307 0.99371 1.01432 0.88234 1.23215 0.99908 1.03633 0.90037 1.22405 0.98546 0.98306 1.03512 0.84500 1.20036 0.81010 0.85763 0.79070 1.90660 1.53888 1.50178 1.50619 1.48036 1.05306 1.26430 1.54019 1.21756 0.99585 0.87389 0.92326 1.20596 0.95634 0.94201 0.98606 1.26316 1.02551 1.06241 0.99676 1.83753 1.22303 1.28365 1.23437 1.26867 1.00302 1.02567 0.94268 1.19302 0.81684 0.91584 0.97648 1.42424 1.07880 1.17015 1.70666 1.19646 0.89066 0.97972 1.31227 0.89701 1.25653 1.01703 0.97843 1.01354 1.69842 1.30079 1.16485 1.45501 0.85053 0.78585 0.77411 0.78133 1.21403 1.22240 1.18945 1.65737 1.04326 1.21776 1.27619 1.21206 0.98168 0.93985 0.97267 1.20255 0.85441 0.95418 0.91518 0.93193 0.92183 0.91688 0.90242 0.91736 0.88648 0.85383 0.89269 0.87654 0.87041 0.89280 0.92549 0.93231 0.79520 0.93895 0.86249 0.88118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.63 9.87 71.98 0.71 -0.91 16 2 C -0.09 -1.13 6.22 30.60 0.19 -0.94 16 3 C -0.12 -1.83 5.25 -10.79 -0.06 -1.88 16 4 H 0.10 1.93 7.60 -2.39 -0.02 1.91 16 5 C -0.13 -1.73 9.88 30.60 0.30 -1.43 16 6 C -0.21 -3.51 4.96 -11.54 -0.06 -3.57 16 7 H 0.14 2.03 6.47 -2.39 -0.02 2.01 16 8 C 0.55 12.45 7.49 87.66 0.66 13.11 16 9 O -0.57 -16.44 15.69 -3.06 -0.05 -16.49 16 10 N -0.61 -12.75 2.92 -820.56 -2.40 -15.15 16 11 C 0.11 2.15 6.41 86.37 0.55 2.70 16 12 C -0.05 -0.97 6.44 30.03 0.19 -0.77 16 13 C -0.23 -5.95 6.43 24.95 0.16 -5.79 16 14 S 0.16 4.82 23.17 -56.49 -1.31 3.52 16 15 C 0.04 1.38 6.75 88.57 0.60 1.98 16 16 C 0.23 9.29 6.84 85.64 0.59 9.88 16 17 N -0.74 -37.78 5.59 -347.19 -1.94 -39.72 16 18 C -0.25 -13.65 9.99 84.03 0.84 -12.81 16 19 H 0.09 4.39 7.83 -2.91 -0.02 4.37 16 20 C -0.07 -4.16 5.50 84.86 0.47 -3.69 16 21 N -0.97 -59.25 13.06 21.65 0.28 -58.97 16 22 Si 0.98 45.46 29.55 68.60 2.03 47.48 16 23 H -0.29 -13.13 7.11 99.48 0.71 -12.43 16 24 H -0.30 -13.84 7.11 99.48 0.71 -13.13 16 25 H -0.26 -11.47 7.11 99.48 0.71 -10.76 16 26 N -0.48 -17.00 10.51 -177.37 -1.86 -18.87 16 27 C 0.03 0.77 6.85 42.02 0.29 1.06 16 28 C 0.20 4.31 6.63 85.91 0.57 4.88 16 29 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 30 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 32 H 0.08 0.77 7.87 -2.39 -0.02 0.76 16 33 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 34 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 35 H 0.13 1.15 8.03 -2.38 -0.02 1.13 16 36 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 37 H 0.11 2.00 7.01 -2.39 -0.02 1.99 16 38 H 0.11 1.73 8.14 -2.39 -0.02 1.71 16 39 H 0.09 1.67 8.14 -2.38 -0.02 1.65 16 40 H 0.06 2.14 8.14 -2.38 -0.02 2.12 16 41 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 42 H 0.37 20.83 7.66 -92.71 -0.71 20.12 16 43 H 0.25 14.91 8.31 -92.71 -0.77 14.14 16 44 H 0.12 2.22 5.66 -2.39 -0.01 2.21 16 45 H 0.10 2.04 8.14 -2.39 -0.02 2.02 16 Total: -1.00 -70.18 383.32 1.05 -69.13 By element: Atomic # 1 Polarization: 26.97 SS G_CDS: 0.30 Total: 27.27 kcal Atomic # 6 Polarization: -4.21 SS G_CDS: 6.00 Total: 1.79 kcal Atomic # 7 Polarization: -126.78 SS G_CDS: -5.92 Total: -132.70 kcal Atomic # 8 Polarization: -16.44 SS G_CDS: -0.05 Total: -16.49 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 2.03 Total: 47.48 kcal Atomic # 16 Polarization: 4.82 SS G_CDS: -1.31 Total: 3.52 kcal Total: -70.18 1.05 -69.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691804677.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.932 kcal (2) G-P(sol) polarization free energy of solvation -70.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.130 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds