Wall clock time and date at job start Tue Mar 31 2020 18:31:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50700 * 120.00069 * 2 1 4 4 C 1.50704 * 119.99928 * 180.02562 * 2 1 3 5 5 C 1.53000 * 109.47072 * 94.99846 * 4 2 1 6 6 C 1.50691 * 109.47075 * 180.02562 * 5 4 2 7 7 O 1.21285 * 120.00230 * 359.97438 * 6 5 4 8 8 N 1.34780 * 120.00226 * 179.97438 * 6 5 4 9 9 C 1.47062 * 120.80029 * 179.97438 * 8 6 5 10 10 C 1.53295 * 108.60784 * 115.31048 * 9 8 6 11 11 C 1.50992 * 108.95790 * 45.06357 * 10 9 8 12 12 S 1.75959 * 126.02852 * 162.31687 * 11 10 9 13 13 C 1.70908 * 90.30364 * 179.63406 * 12 11 10 14 14 C 1.50706 * 124.92348 * 180.08570 * 13 12 11 15 15 N 1.46498 * 109.46936 * 270.00005 * 14 13 12 16 16 C 1.36937 * 119.99954 * 180.02562 * 15 14 13 17 17 H 1.08000 * 119.99636 * 359.97438 * 16 15 14 18 18 C 1.38809 * 120.00180 * 179.97438 * 16 15 14 19 19 N 1.31619 * 120.00178 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 119.99941 * 179.97438 * 18 16 15 21 21 H 1.48507 * 109.47089 * 60.00272 * 20 18 16 22 22 H 1.48505 * 109.47340 * 179.97438 * 20 18 16 23 23 H 1.48505 * 109.47514 * 300.00169 * 20 18 16 24 24 N 1.28677 * 110.14692 * 0.06496 * 13 12 11 25 25 C 1.32432 * 117.82620 * 0.07915 * 24 13 12 26 26 C 1.47032 * 120.79813 * 0.02647 * 8 6 5 27 27 H 1.07994 * 119.99923 * 179.97438 * 1 2 3 28 28 H 1.07998 * 120.00055 * 359.97438 * 1 2 3 29 29 H 1.09001 * 109.47069 * 270.00526 * 3 2 1 30 30 H 1.08997 * 109.47025 * 29.99881 * 3 2 1 31 31 H 1.08994 * 109.47195 * 150.00289 * 3 2 1 32 32 H 1.08997 * 109.47011 * 334.99882 * 4 2 1 33 33 H 1.08994 * 109.46941 * 215.00061 * 4 2 1 34 34 H 1.09004 * 109.47147 * 59.99734 * 5 4 2 35 35 H 1.09003 * 109.47011 * 300.00383 * 5 4 2 36 36 H 1.09000 * 109.61084 * 355.58151 * 9 8 6 37 37 H 1.08993 * 109.62093 * 235.05151 * 9 8 6 38 38 H 1.08995 * 109.56075 * 285.21909 * 10 9 8 39 39 H 1.09002 * 109.55673 * 164.90458 * 10 9 8 40 40 H 1.08997 * 109.47196 * 30.00065 * 14 13 12 41 41 H 1.08993 * 109.46898 * 150.00160 * 14 13 12 42 42 H 0.97001 * 120.00055 * 0.02562 * 15 14 13 43 43 H 0.97002 * 120.00370 * 179.97438 * 19 18 16 44 44 H 1.08991 * 109.82279 * 105.66759 * 26 8 6 45 45 H 1.09007 * 109.80660 * 344.76649 * 26 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 2.0636 -1.3051 -0.0006 5 6 2.4274 -1.6833 -1.4378 6 6 3.1803 -2.9887 -1.4384 7 8 3.4043 -3.5601 -0.3923 8 7 3.6048 -3.5213 -2.6015 9 6 4.3415 -4.7939 -2.6224 10 6 3.4956 -5.8366 -3.3622 11 6 2.9395 -5.2141 -4.6203 12 16 2.2888 -6.0834 -6.0049 13 6 1.9568 -4.6022 -6.7903 14 6 1.3318 -4.4706 -8.1554 15 7 2.3841 -4.4526 -9.1745 16 6 2.0531 -4.3390 -10.4984 17 1 1.0164 -4.2631 -10.7912 18 6 3.0502 -4.3214 -11.4640 19 7 4.3136 -4.4144 -11.1072 20 14 2.5986 -4.1671 -13.2700 21 1 1.8640 -2.8953 -13.4897 22 1 3.8356 -4.1719 -14.0918 23 1 1.7373 -5.3108 -13.6645 24 7 2.3174 -3.6158 -6.0469 25 6 2.8549 -3.8936 -4.8689 26 6 3.3434 -2.8433 -3.8797 27 1 -0.5400 -0.9353 -0.0004 28 1 -0.5400 0.9353 0.0004 29 1 2.2451 1.6198 -1.0277 30 1 1.4745 2.0647 0.5138 31 1 3.0159 1.1747 0.5138 32 1 1.4386 -2.0856 0.4334 33 1 2.9742 -1.1991 0.5889 34 1 3.0523 -0.9027 -1.8718 35 1 1.5166 -1.7892 -2.0272 36 1 4.5234 -5.1282 -1.6010 37 1 5.2909 -4.6587 -3.1404 38 1 2.6752 -6.1614 -2.7224 39 1 4.1179 -6.6927 -3.6230 40 1 0.6675 -5.3161 -8.3339 41 1 0.7613 -3.5433 -8.2058 42 1 3.3152 -4.5212 -8.9115 43 1 5.0104 -4.4025 -11.7820 44 1 4.2607 -2.3854 -4.2495 45 1 2.5775 -2.0798 -3.7430 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691805031.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:31:03 Heat of formation + Delta-G solvation = 32.855612 kcal Electronic energy + Delta-G solvation = -25625.078505 eV Core-core repulsion = 21962.802368 eV Total energy + Delta-G solvation = -3662.276137 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.71500 -39.39039 -36.98633 -36.33454 -34.69508 -32.97438 -31.71497 -31.13483 -29.81159 -27.59849 -26.84332 -26.43279 -24.79150 -23.62575 -22.75673 -21.76861 -19.71611 -18.81620 -18.19007 -18.07151 -17.25217 -16.80692 -16.37638 -16.08363 -15.35489 -14.97948 -14.83289 -14.56068 -14.36063 -14.09997 -13.85414 -13.64040 -13.53390 -13.42257 -13.10336 -12.77827 -12.70387 -12.58380 -12.31275 -12.25146 -12.00959 -11.82196 -11.48884 -11.35384 -11.19724 -11.09583 -10.98436 -10.84383 -10.21266 -10.10335 -9.85453 -9.35753 -9.33646 -9.11524 -8.96140 -8.93233 -8.46520 -7.05972 -5.83401 -3.15099 0.85878 1.50980 1.88263 1.96953 2.35477 2.64666 2.88497 3.41097 3.45315 3.46498 4.01111 4.19995 4.54364 4.55902 4.58156 4.67592 4.73669 4.79470 4.90479 4.98812 5.01450 5.17786 5.21983 5.22972 5.26690 5.32841 5.40458 5.49206 5.52729 5.57195 5.64084 5.66095 5.68138 5.76705 5.82782 5.96037 6.10752 6.15104 6.32854 6.38707 6.43727 6.56005 7.06822 7.61426 7.86007 7.97744 8.32196 9.44566 9.95331 10.31744 11.38808 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.015017 B = 0.002401 C = 0.002200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1864.137936 B =11661.079748 C =12726.560889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.127 4.127 3 C -0.121 4.121 4 C -0.069 4.069 5 C -0.137 4.137 6 C 0.522 3.478 7 O -0.541 6.541 8 N -0.613 5.613 9 C 0.115 3.885 10 C -0.053 4.053 11 C -0.237 4.237 12 S 0.136 5.864 13 C 0.076 3.924 14 C 0.224 3.776 15 N -0.723 5.723 16 C -0.246 4.246 17 H 0.074 0.926 18 C -0.009 4.009 19 N -0.930 5.930 20 Si 0.912 3.088 21 H -0.284 1.284 22 H -0.290 1.290 23 H -0.284 1.284 24 N -0.464 5.464 25 C 0.045 3.955 26 C 0.193 3.807 27 H 0.097 0.903 28 H 0.097 0.903 29 H 0.069 0.931 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.075 0.925 33 H 0.077 0.923 34 H 0.097 0.903 35 H 0.097 0.903 36 H 0.103 0.897 37 H 0.078 0.922 38 H 0.082 0.918 39 H 0.090 0.910 40 H 0.043 0.957 41 H 0.054 0.946 42 H 0.387 0.613 43 H 0.257 0.743 44 H 0.093 0.907 45 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.285 3.894 22.885 23.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.127 4.127 3 C -0.178 4.178 4 C -0.107 4.107 5 C -0.177 4.177 6 C 0.311 3.689 7 O -0.418 6.418 8 N -0.347 5.347 9 C -0.009 4.009 10 C -0.093 4.093 11 C -0.359 4.359 12 S 0.395 5.605 13 C -0.203 4.203 14 C 0.094 3.906 15 N -0.369 5.369 16 C -0.376 4.376 17 H 0.092 0.908 18 C -0.206 4.206 19 N -0.578 5.578 20 Si 0.743 3.257 21 H -0.211 1.211 22 H -0.216 1.216 23 H -0.211 1.211 24 N -0.178 5.178 25 C -0.088 4.088 26 C 0.067 3.933 27 H 0.115 0.885 28 H 0.116 0.884 29 H 0.087 0.913 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.094 0.906 33 H 0.096 0.904 34 H 0.116 0.884 35 H 0.115 0.885 36 H 0.121 0.879 37 H 0.096 0.904 38 H 0.100 0.900 39 H 0.108 0.892 40 H 0.060 0.940 41 H 0.071 0.929 42 H 0.221 0.779 43 H 0.067 0.933 44 H 0.111 0.889 45 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -3.501 3.057 22.777 23.246 hybrid contribution 0.365 0.674 -0.728 1.057 sum -3.135 3.731 22.049 22.581 Atomic orbital electron populations 1.23737 0.95259 1.01961 1.02138 1.21767 0.95436 0.95660 0.99878 1.20888 1.00176 0.94451 1.02285 1.20430 1.00846 0.94356 0.95041 1.21713 1.01406 0.94916 0.99622 1.20695 0.78534 0.86950 0.82697 1.90689 1.57117 1.63127 1.30874 1.48117 1.56499 1.23766 1.06269 1.21654 0.94186 0.82648 1.02418 1.20461 0.99703 0.97916 0.91222 1.25845 1.11584 0.96709 1.01770 1.83968 1.55609 1.12922 1.08044 1.27309 1.01441 0.90079 1.01483 1.19340 0.91525 1.00180 0.79587 1.42255 1.03937 1.89165 1.01529 1.19152 0.92863 1.43449 0.82184 0.90789 1.24778 0.95178 1.02371 0.98239 1.69666 0.98555 1.56639 1.32905 0.86202 0.76962 0.78000 0.84583 1.21089 1.21624 1.21094 1.65772 1.13403 1.34844 1.03776 1.20833 1.02080 0.92461 0.93447 1.20267 1.01599 0.91525 0.79904 0.88451 0.88435 0.91274 0.91886 0.91785 0.90588 0.90448 0.88437 0.88509 0.87905 0.90361 0.89972 0.89194 0.93966 0.92858 0.77947 0.93282 0.88920 0.87760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.45 13.89 29.01 0.40 -1.04 16 2 C -0.13 -0.97 5.31 -101.07 -0.54 -1.50 16 3 C -0.12 -0.76 10.03 36.01 0.36 -0.40 16 4 C -0.07 -0.58 4.67 -27.88 -0.13 -0.71 16 5 C -0.14 -1.13 4.08 -27.89 -0.11 -1.25 16 6 C 0.52 5.74 7.70 -10.99 -0.08 5.66 16 7 O -0.54 -7.49 15.41 5.55 0.09 -7.41 16 8 N -0.61 -6.55 2.92 -173.04 -0.50 -7.06 16 9 C 0.11 1.15 6.41 -3.58 -0.02 1.13 16 10 C -0.05 -0.55 6.44 -27.59 -0.18 -0.73 16 11 C -0.24 -3.26 6.43 -35.44 -0.23 -3.49 16 12 S 0.14 2.06 23.17 -107.50 -2.49 -0.43 16 13 C 0.08 1.38 6.75 -13.60 -0.09 1.29 16 14 C 0.22 4.56 6.84 -5.19 -0.04 4.52 16 15 N -0.72 -18.30 5.59 -61.09 -0.34 -18.65 16 16 C -0.25 -6.75 9.99 -15.06 -0.15 -6.90 16 17 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 18 C -0.01 -0.26 5.50 -17.43 -0.10 -0.35 16 19 N -0.93 -27.92 13.06 55.49 0.72 -27.19 16 20 Si 0.91 22.02 29.55 -169.99 -5.02 17.00 16 21 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 22 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 23 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 24 N -0.46 -8.23 10.51 -7.27 -0.08 -8.31 16 25 C 0.05 0.67 6.87 -82.80 -0.57 0.10 16 26 C 0.19 2.13 6.65 -4.10 -0.03 2.10 16 27 H 0.10 0.71 7.99 -52.49 -0.42 0.29 16 28 H 0.10 0.64 8.04 -52.49 -0.42 0.21 16 29 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.06 0.36 8.06 -51.93 -0.42 -0.06 16 31 H 0.06 0.38 8.08 -51.93 -0.42 -0.04 16 32 H 0.08 0.71 7.94 -51.93 -0.41 0.30 16 33 H 0.08 0.68 8.06 -51.93 -0.42 0.27 16 34 H 0.10 0.66 8.09 -51.93 -0.42 0.24 16 35 H 0.10 0.77 7.57 -51.93 -0.39 0.37 16 36 H 0.10 1.02 7.01 -51.93 -0.36 0.66 16 37 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 38 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 42 H 0.39 10.52 7.66 -40.82 -0.31 10.21 16 43 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 44 H 0.09 0.96 8.14 -51.93 -0.42 0.53 16 45 H 0.10 0.99 6.15 -51.93 -0.32 0.67 16 LS Contribution 386.86 15.07 5.83 5.83 Total: -1.00 -32.56 386.86 -10.12 -42.68 By element: Atomic # 1 Polarization: 11.94 SS G_CDS: -6.82 Total: 5.12 kcal Atomic # 6 Polarization: -0.08 SS G_CDS: -1.50 Total: -1.58 kcal Atomic # 7 Polarization: -61.01 SS G_CDS: -0.20 Total: -61.21 kcal Atomic # 8 Polarization: -7.49 SS G_CDS: 0.09 Total: -7.41 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Atomic # 16 Polarization: 2.06 SS G_CDS: -2.49 Total: -0.43 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -32.56 -10.12 -42.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691805031.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.534 kcal (2) G-P(sol) polarization free energy of solvation -32.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.678 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds