Wall clock time and date at job start Tue Mar 31 2020 18:31:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50700 * 120.00069 * 2 1 4 4 C 1.50704 * 119.99928 * 180.02562 * 2 1 3 5 5 C 1.53000 * 109.47072 * 94.99846 * 4 2 1 6 6 C 1.50691 * 109.47075 * 180.02562 * 5 4 2 7 7 O 1.21285 * 120.00230 * 359.97438 * 6 5 4 8 8 N 1.34780 * 120.00226 * 179.97438 * 6 5 4 9 9 C 1.47062 * 120.80029 * 179.97438 * 8 6 5 10 10 C 1.53295 * 108.60784 * 115.31048 * 9 8 6 11 11 C 1.50992 * 108.95790 * 45.06357 * 10 9 8 12 12 S 1.75959 * 126.02852 * 162.31687 * 11 10 9 13 13 C 1.70908 * 90.30364 * 179.63406 * 12 11 10 14 14 C 1.50706 * 124.92348 * 180.08570 * 13 12 11 15 15 N 1.46498 * 109.46936 * 270.00005 * 14 13 12 16 16 C 1.36937 * 119.99954 * 180.02562 * 15 14 13 17 17 H 1.08000 * 119.99636 * 359.97438 * 16 15 14 18 18 C 1.38809 * 120.00180 * 179.97438 * 16 15 14 19 19 N 1.31619 * 120.00178 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 119.99941 * 179.97438 * 18 16 15 21 21 H 1.48507 * 109.47089 * 60.00272 * 20 18 16 22 22 H 1.48505 * 109.47340 * 179.97438 * 20 18 16 23 23 H 1.48505 * 109.47514 * 300.00169 * 20 18 16 24 24 N 1.28677 * 110.14692 * 0.06496 * 13 12 11 25 25 C 1.32432 * 117.82620 * 0.07915 * 24 13 12 26 26 C 1.47032 * 120.79813 * 0.02647 * 8 6 5 27 27 H 1.07994 * 119.99923 * 179.97438 * 1 2 3 28 28 H 1.07998 * 120.00055 * 359.97438 * 1 2 3 29 29 H 1.09001 * 109.47069 * 270.00526 * 3 2 1 30 30 H 1.08997 * 109.47025 * 29.99881 * 3 2 1 31 31 H 1.08994 * 109.47195 * 150.00289 * 3 2 1 32 32 H 1.08997 * 109.47011 * 334.99882 * 4 2 1 33 33 H 1.08994 * 109.46941 * 215.00061 * 4 2 1 34 34 H 1.09004 * 109.47147 * 59.99734 * 5 4 2 35 35 H 1.09003 * 109.47011 * 300.00383 * 5 4 2 36 36 H 1.09000 * 109.61084 * 355.58151 * 9 8 6 37 37 H 1.08993 * 109.62093 * 235.05151 * 9 8 6 38 38 H 1.08995 * 109.56075 * 285.21909 * 10 9 8 39 39 H 1.09002 * 109.55673 * 164.90458 * 10 9 8 40 40 H 1.08997 * 109.47196 * 30.00065 * 14 13 12 41 41 H 1.08993 * 109.46898 * 150.00160 * 14 13 12 42 42 H 0.97001 * 120.00055 * 0.02562 * 15 14 13 43 43 H 0.97002 * 120.00370 * 179.97438 * 19 18 16 44 44 H 1.08991 * 109.82279 * 105.66759 * 26 8 6 45 45 H 1.09007 * 109.80660 * 344.76649 * 26 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 2.0636 -1.3051 -0.0006 5 6 2.4274 -1.6833 -1.4378 6 6 3.1803 -2.9887 -1.4384 7 8 3.4043 -3.5601 -0.3923 8 7 3.6048 -3.5213 -2.6015 9 6 4.3415 -4.7939 -2.6224 10 6 3.4956 -5.8366 -3.3622 11 6 2.9395 -5.2141 -4.6203 12 16 2.2888 -6.0834 -6.0049 13 6 1.9568 -4.6022 -6.7903 14 6 1.3318 -4.4706 -8.1554 15 7 2.3841 -4.4526 -9.1745 16 6 2.0531 -4.3390 -10.4984 17 1 1.0164 -4.2631 -10.7912 18 6 3.0502 -4.3214 -11.4640 19 7 4.3136 -4.4144 -11.1072 20 14 2.5986 -4.1671 -13.2700 21 1 1.8640 -2.8953 -13.4897 22 1 3.8356 -4.1719 -14.0918 23 1 1.7373 -5.3108 -13.6645 24 7 2.3174 -3.6158 -6.0469 25 6 2.8549 -3.8936 -4.8689 26 6 3.3434 -2.8433 -3.8797 27 1 -0.5400 -0.9353 -0.0004 28 1 -0.5400 0.9353 0.0004 29 1 2.2451 1.6198 -1.0277 30 1 1.4745 2.0647 0.5138 31 1 3.0159 1.1747 0.5138 32 1 1.4386 -2.0856 0.4334 33 1 2.9742 -1.1991 0.5889 34 1 3.0523 -0.9027 -1.8718 35 1 1.5166 -1.7892 -2.0272 36 1 4.5234 -5.1282 -1.6010 37 1 5.2909 -4.6587 -3.1404 38 1 2.6752 -6.1614 -2.7224 39 1 4.1179 -6.6927 -3.6230 40 1 0.6675 -5.3161 -8.3339 41 1 0.7613 -3.5433 -8.2058 42 1 3.3152 -4.5212 -8.9115 43 1 5.0104 -4.4025 -11.7820 44 1 4.2607 -2.3854 -4.2495 45 1 2.5775 -2.0798 -3.7430 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691805031.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:31:03 Heat of formation + Delta-G solvation = 13.250621 kcal Electronic energy + Delta-G solvation = -25625.928641 eV Core-core repulsion = 21962.802368 eV Total energy + Delta-G solvation = -3663.126273 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.68731 -40.47381 -37.84230 -37.18941 -36.44939 -33.94845 -33.41637 -31.93263 -31.12035 -28.42935 -28.11019 -27.33549 -25.62699 -25.35909 -23.84101 -23.11159 -20.72981 -19.62618 -19.43280 -19.09392 -18.88900 -17.72518 -17.28766 -16.95201 -16.80909 -16.23807 -15.91000 -15.62754 -15.30358 -15.23576 -15.02887 -14.90414 -14.74905 -14.19494 -14.07947 -13.98927 -13.81738 -13.60876 -13.45345 -13.06048 -12.98739 -12.96290 -12.72815 -12.52152 -12.38920 -12.18665 -12.14771 -11.96950 -11.88599 -11.82016 -11.02312 -10.98691 -10.61314 -10.23574 -9.91251 -9.89868 -9.63854 -9.10163 -7.97033 -5.29294 -0.37153 0.31366 0.74247 1.29739 1.49141 1.50102 1.52862 1.58391 1.65391 1.82855 2.56076 2.93544 3.37263 3.39431 3.66369 3.80824 3.85791 3.96311 4.04545 4.06558 4.09632 4.20167 4.26522 4.30938 4.34725 4.48965 4.54305 4.66038 4.69882 4.73503 4.76982 4.84286 4.86213 4.89018 4.97301 5.09562 5.13633 5.14479 5.19327 5.29132 5.47280 5.76409 5.99277 6.20904 6.21440 6.72698 7.02258 7.28899 7.94779 8.22002 9.26076 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.015017 B = 0.002401 C = 0.002200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1864.137936 B =11661.079748 C =12726.560889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.132 4.132 3 C -0.121 4.121 4 C -0.065 4.065 5 C -0.132 4.132 6 C 0.522 3.478 7 O -0.572 6.572 8 N -0.611 5.611 9 C 0.113 3.887 10 C -0.050 4.050 11 C -0.225 4.225 12 S 0.160 5.840 13 C 0.038 3.962 14 C 0.227 3.773 15 N -0.736 5.736 16 C -0.249 4.249 17 H 0.085 0.915 18 C -0.072 4.072 19 N -0.969 5.969 20 Si 0.980 3.020 21 H -0.277 1.277 22 H -0.296 1.296 23 H -0.274 1.274 24 N -0.479 5.479 25 C 0.027 3.973 26 C 0.198 3.802 27 H 0.095 0.905 28 H 0.107 0.893 29 H 0.075 0.925 30 H 0.068 0.932 31 H 0.066 0.934 32 H 0.062 0.938 33 H 0.071 0.929 34 H 0.118 0.882 35 H 0.104 0.896 36 H 0.105 0.895 37 H 0.088 0.912 38 H 0.089 0.911 39 H 0.110 0.890 40 H 0.056 0.944 41 H 0.050 0.950 42 H 0.373 0.627 43 H 0.253 0.747 44 H 0.103 0.897 45 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.724 4.219 23.578 24.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.132 4.132 3 C -0.178 4.178 4 C -0.103 4.103 5 C -0.172 4.172 6 C 0.312 3.688 7 O -0.452 6.452 8 N -0.344 5.344 9 C -0.011 4.011 10 C -0.091 4.091 11 C -0.347 4.347 12 S 0.418 5.582 13 C -0.240 4.240 14 C 0.098 3.902 15 N -0.380 5.380 16 C -0.381 4.381 17 H 0.102 0.898 18 C -0.264 4.264 19 N -0.619 5.619 20 Si 0.808 3.192 21 H -0.203 1.203 22 H -0.223 1.223 23 H -0.200 1.200 24 N -0.195 5.195 25 C -0.106 4.106 26 C 0.072 3.928 27 H 0.113 0.887 28 H 0.125 0.875 29 H 0.093 0.907 30 H 0.087 0.913 31 H 0.085 0.915 32 H 0.080 0.920 33 H 0.090 0.910 34 H 0.136 0.864 35 H 0.122 0.878 36 H 0.124 0.876 37 H 0.106 0.894 38 H 0.107 0.893 39 H 0.128 0.872 40 H 0.074 0.926 41 H 0.067 0.933 42 H 0.205 0.795 43 H 0.061 0.939 44 H 0.121 0.879 45 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -3.993 3.387 23.475 24.052 hybrid contribution 0.474 0.522 -0.790 1.059 sum -3.519 3.909 22.686 23.287 Atomic orbital electron populations 1.23855 0.95374 1.02366 1.01975 1.21829 0.95542 0.95768 1.00065 1.20913 1.00234 0.93835 1.02825 1.20358 1.00405 0.94503 0.95026 1.21739 1.01641 0.94026 0.99746 1.21110 0.78046 0.87444 0.82154 1.90679 1.58413 1.64162 1.31897 1.48165 1.56226 1.23954 1.06082 1.21733 0.94411 0.82308 1.02603 1.20609 1.00216 0.98541 0.89690 1.26329 1.09861 0.96484 1.02036 1.83777 1.55073 1.11213 1.08124 1.26851 1.03921 0.91900 1.01348 1.19296 0.90550 1.00300 0.80080 1.42414 1.04348 1.89146 1.02050 1.19609 0.93334 1.41720 0.83401 0.89754 1.25640 0.95144 1.03067 1.02595 1.69832 0.99521 1.58666 1.33898 0.85131 0.76436 0.78379 0.79280 1.20259 1.22264 1.19960 1.65733 1.13324 1.35587 1.04823 1.21320 1.02300 0.93834 0.93193 1.20365 1.02481 0.90822 0.79111 0.88712 0.87475 0.90651 0.91272 0.91518 0.91959 0.91036 0.86440 0.87809 0.87633 0.89374 0.89286 0.87217 0.92614 0.93269 0.79519 0.93871 0.87891 0.86103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.71 13.89 67.78 0.94 -1.77 16 2 C -0.13 -1.82 5.31 -16.49 -0.09 -1.91 16 3 C -0.12 -1.31 10.03 71.24 0.71 -0.60 16 4 C -0.07 -1.03 4.67 29.85 0.14 -0.89 16 5 C -0.13 -1.95 4.08 29.85 0.12 -1.83 16 6 C 0.52 10.65 7.70 87.65 0.68 11.33 16 7 O -0.57 -15.29 15.41 -3.05 -0.05 -15.33 16 8 N -0.61 -11.84 2.92 -819.76 -2.39 -14.23 16 9 C 0.11 2.03 6.41 86.37 0.55 2.59 16 10 C -0.05 -0.93 6.44 30.04 0.19 -0.74 16 11 C -0.23 -5.80 6.43 24.95 0.16 -5.64 16 12 S 0.16 4.69 23.17 -56.49 -1.31 3.38 16 13 C 0.04 1.37 6.75 88.57 0.60 1.96 16 14 C 0.23 9.26 6.84 85.64 0.59 9.85 16 15 N -0.74 -37.68 5.59 -347.19 -1.94 -39.62 16 16 C -0.25 -13.72 9.99 84.03 0.84 -12.88 16 17 H 0.08 4.35 7.83 -2.91 -0.02 4.33 16 18 C -0.07 -4.09 5.50 84.86 0.47 -3.62 16 19 N -0.97 -59.15 13.06 21.65 0.28 -58.87 16 20 Si 0.98 45.35 29.55 68.60 2.03 47.38 16 21 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 22 H -0.30 -13.88 7.11 99.48 0.71 -13.17 16 23 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 24 N -0.48 -16.77 10.51 -176.92 -1.86 -18.63 16 25 C 0.03 0.75 6.87 42.16 0.29 1.03 16 26 C 0.20 3.97 6.65 86.05 0.57 4.54 16 27 H 0.09 1.31 7.99 -2.91 -0.02 1.29 16 28 H 0.11 1.23 8.04 -2.91 -0.02 1.21 16 29 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.07 0.66 8.06 -2.39 -0.02 0.64 16 31 H 0.07 0.68 8.08 -2.39 -0.02 0.66 16 32 H 0.06 1.15 7.94 -2.39 -0.02 1.13 16 33 H 0.07 1.21 8.06 -2.39 -0.02 1.19 16 34 H 0.12 1.28 8.09 -2.38 -0.02 1.27 16 35 H 0.10 1.43 7.57 -2.39 -0.02 1.41 16 36 H 0.11 1.90 7.01 -2.39 -0.02 1.88 16 37 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 38 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 39 H 0.11 1.66 8.14 -2.39 -0.02 1.64 16 40 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 41 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 42 H 0.37 20.78 7.66 -92.71 -0.71 20.07 16 43 H 0.25 14.93 8.31 -92.71 -0.77 14.16 16 44 H 0.10 1.90 8.14 -2.39 -0.02 1.88 16 45 H 0.12 2.01 6.15 -2.38 -0.01 2.00 16 Total: -1.00 -69.93 386.86 1.81 -68.11 By element: Atomic # 1 Polarization: 26.12 SS G_CDS: 0.29 Total: 26.41 kcal Atomic # 6 Polarization: -5.35 SS G_CDS: 6.76 Total: 1.41 kcal Atomic # 7 Polarization: -125.44 SS G_CDS: -5.91 Total: -131.35 kcal Atomic # 8 Polarization: -15.29 SS G_CDS: -0.05 Total: -15.33 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 2.03 Total: 47.38 kcal Atomic # 16 Polarization: 4.69 SS G_CDS: -1.31 Total: 3.38 kcal Total: -69.93 1.81 -68.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691805031.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.363 kcal (2) G-P(sol) polarization free energy of solvation -69.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.113 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds