Wall clock time and date at job start Tue Mar 31 2020 18:33:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47483 * 2 1 4 4 C 1.53006 * 109.47250 * 120.00050 * 2 1 3 5 5 C 1.53000 * 109.46846 * 64.99654 * 4 2 1 6 6 H 1.09002 * 109.47398 * 305.00335 * 5 4 2 7 7 C 1.52997 * 109.47060 * 185.00166 * 5 4 2 8 8 N 1.46500 * 109.47520 * 185.00200 * 7 5 4 9 9 C 1.36935 * 120.00067 * 179.97438 * 8 7 5 10 10 H 1.07995 * 120.00414 * 0.02562 * 9 8 7 11 11 C 1.38818 * 119.99870 * 180.02562 * 9 8 7 12 12 N 1.31616 * 120.00089 * 180.02562 * 11 9 8 13 13 Si 1.86805 * 119.99834 * 359.97438 * 11 9 8 14 14 H 1.48498 * 109.46816 * 90.00033 * 13 11 9 15 15 H 1.48494 * 109.47070 * 210.00191 * 13 11 9 16 16 H 1.48496 * 109.47196 * 330.00453 * 13 11 9 17 17 N 1.46500 * 109.47023 * 65.00406 * 5 4 2 18 18 C 1.34779 * 119.99793 * 274.99565 * 17 5 4 19 19 O 1.21721 * 120.00219 * 0.02562 * 18 17 5 20 20 C 1.46491 * 119.99684 * 179.97438 * 18 17 5 21 21 C 1.36114 * 125.71407 * 179.97438 * 20 18 17 22 22 C 1.42223 * 107.63013 * 179.97438 * 21 20 18 23 23 C 1.45594 * 140.77887 * 180.02562 * 22 21 20 24 24 C 1.31811 * 114.63293 * 179.97438 * 23 22 21 25 25 S 1.75354 * 111.24589 * 0.02853 * 24 23 22 26 26 C 1.38173 * 106.99528 * 0.02562 * 22 21 20 27 27 N 1.37458 * 108.16874 * 359.75830 * 26 22 21 28 28 H 0.96998 * 125.68715 * 180.27776 * 27 26 22 29 29 H 1.08996 * 109.47202 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47195 * 299.99873 * 1 2 3 31 31 H 1.08994 * 109.46924 * 59.99642 * 1 2 3 32 32 H 1.09000 * 109.47197 * 239.99570 * 2 1 3 33 33 H 1.08993 * 109.47728 * 179.97438 * 3 2 1 34 34 H 1.08998 * 109.47041 * 300.00517 * 3 2 1 35 35 H 1.09009 * 109.47313 * 59.99705 * 3 2 1 36 36 H 1.09002 * 109.46824 * 305.00070 * 4 2 1 37 37 H 1.08991 * 109.47210 * 185.00155 * 4 2 1 38 38 H 1.09004 * 109.47346 * 305.00346 * 7 5 4 39 39 H 1.09002 * 109.47196 * 65.00121 * 7 5 4 40 40 H 0.96995 * 119.99638 * 359.97438 * 8 7 5 41 41 H 0.97000 * 120.00137 * 179.97438 * 12 11 9 42 42 H 0.97004 * 120.00223 * 94.99655 * 17 5 4 43 43 H 1.08006 * 126.18060 * 359.97438 * 21 20 18 44 44 H 1.08004 * 122.68380 * 359.97438 * 23 22 21 45 45 H 1.07997 * 124.37694 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.6352 -2.1955 1.1880 6 1 0.5562 -2.2707 1.0527 7 6 2.0353 -2.8889 2.4918 8 7 1.7568 -4.3234 2.3875 9 6 2.0358 -5.1533 3.4404 10 1 2.4607 -4.7504 4.3478 11 6 1.7724 -6.5127 3.3413 12 7 2.0401 -7.3103 4.3534 13 14 1.0368 -7.2096 1.7720 14 1 2.1288 -7.6064 0.8472 15 1 0.2085 -8.3979 2.0988 16 1 0.1885 -6.1783 1.1225 17 7 2.3147 -2.8421 0.0626 18 6 1.7814 -2.7779 -1.1735 19 8 0.7354 -2.1823 -1.3550 20 6 2.4611 -3.4240 -2.2989 21 6 2.0286 -3.4326 -3.5895 22 6 2.9763 -4.1649 -4.3565 23 6 3.2262 -4.6008 -5.7230 24 6 4.3314 -5.3010 -5.8828 25 16 5.1836 -5.4990 -4.3631 26 6 3.9655 -4.5808 -3.4860 27 7 3.6510 -4.1221 -2.2290 28 1 4.1762 -4.2658 -1.4263 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 1.8933 -0.5139 -0.8899 33 1 3.1300 1.4425 0.0005 34 1 1.6767 1.9563 -0.8899 35 1 1.6767 1.9564 0.8900 36 1 1.6054 -0.2617 2.1370 37 1 3.1263 -0.6443 1.2952 38 1 3.0996 -2.7375 2.6721 39 1 1.4632 -2.4669 3.3181 40 1 1.3749 -4.6852 1.5727 41 1 1.8557 -8.2601 4.2843 42 1 3.1484 -3.3164 0.2071 43 1 1.1284 -2.9675 -3.9633 44 1 2.5593 -4.3691 -6.5403 45 1 4.6686 -5.7011 -6.8276 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698872354.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:33:16 Heat of formation + Delta-G solvation = 39.194380 kcal Electronic energy + Delta-G solvation = -26972.229703 eV Core-core repulsion = 23310.228436 eV Total energy + Delta-G solvation = -3662.001267 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 1.95 seconds Orbital eigenvalues (eV) -41.46608 -39.72561 -36.86664 -35.53836 -35.13831 -33.64676 -31.52298 -30.59846 -29.88204 -28.30012 -26.98125 -25.86290 -23.78638 -23.06596 -22.31208 -20.83610 -20.24222 -19.87807 -19.52094 -19.27239 -17.77923 -16.80822 -16.08980 -15.87462 -15.17797 -14.99894 -14.78844 -14.61733 -14.33583 -14.09824 -13.83169 -13.58492 -13.44856 -13.24796 -12.96651 -12.80980 -12.36208 -12.18709 -12.10789 -12.02469 -11.81430 -11.73532 -11.34178 -11.19208 -10.99492 -10.95734 -10.63512 -10.40738 -10.29014 -10.16837 -9.93004 -9.69283 -9.64027 -9.04036 -8.92128 -8.44597 -7.83266 -7.36310 -5.86813 -3.23615 0.90303 1.16517 1.26905 1.80790 2.74031 2.95722 3.14175 3.28634 3.35048 3.38591 3.39296 4.48371 4.49802 4.69532 4.76536 4.87145 5.04458 5.06831 5.24531 5.36436 5.40908 5.42267 5.46165 5.54427 5.55347 5.74369 5.78559 5.88466 5.91014 5.91842 5.96187 6.02667 6.04766 6.16279 6.25002 6.26603 6.35295 6.46729 6.54681 6.56788 6.69672 6.71219 6.98378 7.53949 7.87995 8.19213 8.31785 9.09970 9.82166 10.01024 11.31195 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.007575 B = 0.004776 C = 0.003219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3695.431904 B = 5861.631584 C = 8695.239945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.094 4.094 3 C -0.146 4.146 4 C -0.122 4.122 5 C 0.133 3.867 6 H 0.095 0.905 7 C 0.148 3.852 8 N -0.755 5.755 9 C -0.249 4.249 10 H 0.092 0.908 11 C 0.010 3.990 12 N -0.930 5.930 13 Si 0.879 3.121 14 H -0.285 1.285 15 H -0.289 1.289 16 H -0.277 1.277 17 N -0.712 5.712 18 C 0.584 3.416 19 O -0.515 6.515 20 C -0.004 4.004 21 C -0.072 4.072 22 C -0.164 4.164 23 C -0.069 4.069 24 C -0.224 4.224 25 S 0.131 5.869 26 C -0.008 4.008 27 N -0.523 5.523 28 H 0.422 0.578 29 H 0.074 0.926 30 H 0.040 0.960 31 H 0.044 0.956 32 H 0.074 0.926 33 H 0.047 0.953 34 H 0.049 0.951 35 H 0.051 0.949 36 H 0.074 0.926 37 H 0.063 0.937 38 H 0.033 0.967 39 H 0.044 0.956 40 H 0.362 0.638 41 H 0.261 0.739 42 H 0.397 0.603 43 H 0.156 0.844 44 H 0.144 0.856 45 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.142 11.182 -18.824 22.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.112 4.112 3 C -0.203 4.203 4 C -0.161 4.161 5 C 0.029 3.971 6 H 0.113 0.887 7 C 0.020 3.980 8 N -0.401 5.401 9 C -0.379 4.379 10 H 0.109 0.891 11 C -0.187 4.187 12 N -0.578 5.578 13 Si 0.710 3.290 14 H -0.212 1.212 15 H -0.215 1.215 16 H -0.203 1.203 17 N -0.363 5.363 18 C 0.370 3.630 19 O -0.392 6.392 20 C -0.117 4.117 21 C -0.100 4.100 22 C -0.177 4.177 23 C -0.100 4.100 24 C -0.358 4.358 25 S 0.385 5.615 26 C -0.237 4.237 27 N -0.127 5.127 28 H 0.261 0.739 29 H 0.093 0.907 30 H 0.059 0.941 31 H 0.063 0.937 32 H 0.092 0.908 33 H 0.067 0.933 34 H 0.069 0.931 35 H 0.070 0.930 36 H 0.093 0.907 37 H 0.082 0.918 38 H 0.051 0.949 39 H 0.062 0.938 40 H 0.195 0.805 41 H 0.071 0.929 42 H 0.232 0.768 43 H 0.174 0.826 44 H 0.162 0.838 45 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 5.787 10.845 -18.128 21.903 hybrid contribution -1.058 -0.400 -0.929 1.463 sum 4.729 10.445 -19.057 22.241 Atomic orbital electron populations 1.21833 0.94846 1.02980 0.99913 1.21154 0.96657 0.95015 0.98414 1.21857 1.00336 0.96854 1.01274 1.22019 1.01038 0.94313 0.98719 1.21522 0.98575 0.91531 0.85521 0.88680 1.20964 0.98603 0.85143 0.93257 1.42709 1.77719 1.02751 1.16963 1.19039 1.35591 0.88720 0.94520 0.89062 1.24649 1.00973 0.96009 0.97042 1.69689 1.53573 1.04150 1.30357 0.86636 0.79353 0.78921 0.84132 1.21210 1.21471 1.20309 1.45962 1.27139 1.55685 1.07479 1.16941 0.84688 0.79763 0.81592 1.90861 1.21950 1.42526 1.83846 1.20202 0.89704 1.05530 0.96249 1.20699 0.99348 1.00237 0.89732 1.19381 0.97868 1.07628 0.92813 1.20318 0.97181 0.97894 0.94617 1.24863 1.00821 1.09023 1.01097 1.83991 1.22802 1.56430 0.98288 1.23567 1.03241 1.07700 0.89211 1.41491 1.20020 1.43858 1.07290 0.73885 0.90707 0.94111 0.93668 0.90767 0.93340 0.93145 0.93015 0.90717 0.91814 0.94949 0.93799 0.80475 0.92934 0.76840 0.82600 0.83823 0.81321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 36. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.82 8.03 37.16 0.30 -1.52 16 2 C -0.09 -1.17 2.38 -90.62 -0.22 -1.39 16 3 C -0.15 -1.56 9.19 37.16 0.34 -1.22 16 4 C -0.12 -1.50 4.36 -26.73 -0.12 -1.62 16 5 C 0.13 1.95 2.33 -67.93 -0.16 1.79 16 6 H 0.10 1.57 5.92 -51.93 -0.31 1.26 16 7 C 0.15 2.61 5.82 -4.04 -0.02 2.58 16 8 N -0.76 -16.98 5.24 -59.91 -0.31 -17.29 16 9 C -0.25 -6.80 10.47 -15.06 -0.16 -6.96 16 10 H 0.09 2.66 8.06 -52.49 -0.42 2.24 16 11 C 0.01 0.28 5.50 -17.43 -0.10 0.18 16 12 N -0.93 -28.72 13.97 55.49 0.78 -27.94 16 13 Si 0.88 22.08 27.74 -169.99 -4.71 17.37 16 14 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 15 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 16 H -0.28 -6.77 6.52 56.52 0.37 -6.40 16 17 N -0.71 -9.98 4.46 -55.17 -0.25 -10.22 16 18 C 0.58 8.60 6.33 -12.93 -0.08 8.52 16 19 O -0.52 -8.46 11.80 5.17 0.06 -8.39 16 20 C 0.00 -0.05 6.97 -82.47 -0.57 -0.62 16 21 C -0.07 -0.96 10.58 -38.82 -0.41 -1.37 16 22 C -0.16 -2.06 6.80 -105.46 -0.72 -2.78 16 23 C -0.07 -0.69 10.42 -38.54 -0.40 -1.09 16 24 C -0.22 -1.97 11.03 28.84 0.32 -1.65 16 25 S 0.13 1.31 23.24 -107.50 -2.50 -1.19 16 26 C -0.01 -0.10 8.41 -15.05 -0.13 -0.23 16 27 N -0.52 -6.42 6.08 -7.94 -0.05 -6.47 16 28 H 0.42 4.38 8.14 -40.82 -0.33 4.04 16 29 H 0.07 1.13 4.75 -51.93 -0.25 0.89 16 30 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.07 1.04 5.19 -51.93 -0.27 0.77 16 33 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.05 0.52 8.14 -51.92 -0.42 0.10 16 36 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 39 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.36 8.21 5.20 -40.82 -0.21 7.99 16 41 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 42 H 0.40 5.14 7.67 -40.82 -0.31 4.83 16 43 H 0.16 1.88 8.06 -52.48 -0.42 1.46 16 44 H 0.14 1.08 8.06 -52.48 -0.42 0.66 16 45 H 0.17 0.99 8.06 -52.49 -0.42 0.56 16 LS Contribution 372.59 15.07 5.61 5.61 Total: -1.00 -32.29 372.59 -9.84 -42.13 By element: Atomic # 1 Polarization: 20.12 SS G_CDS: -6.35 Total: 13.77 kcal Atomic # 6 Polarization: -5.25 SS G_CDS: -2.12 Total: -7.37 kcal Atomic # 7 Polarization: -62.10 SS G_CDS: 0.17 Total: -61.93 kcal Atomic # 8 Polarization: -8.46 SS G_CDS: 0.06 Total: -8.39 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -4.71 Total: 17.37 kcal Atomic # 16 Polarization: 1.31 SS G_CDS: -2.50 Total: -1.19 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -32.29 -9.84 -42.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698872354.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.324 kcal (2) G-P(sol) polarization free energy of solvation -32.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.130 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.96 seconds