Wall clock time and date at job start Tue Mar 31 2020 18:33:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47483 * 2 1 4 4 C 1.53006 * 109.47250 * 120.00050 * 2 1 3 5 5 C 1.53000 * 109.46846 * 64.99654 * 4 2 1 6 6 H 1.09002 * 109.47398 * 305.00335 * 5 4 2 7 7 C 1.52997 * 109.47060 * 185.00166 * 5 4 2 8 8 N 1.46500 * 109.47520 * 185.00200 * 7 5 4 9 9 C 1.36935 * 120.00067 * 179.97438 * 8 7 5 10 10 H 1.07995 * 120.00414 * 0.02562 * 9 8 7 11 11 C 1.38818 * 119.99870 * 180.02562 * 9 8 7 12 12 N 1.31616 * 120.00089 * 180.02562 * 11 9 8 13 13 Si 1.86805 * 119.99834 * 359.97438 * 11 9 8 14 14 H 1.48498 * 109.46816 * 90.00033 * 13 11 9 15 15 H 1.48494 * 109.47070 * 210.00191 * 13 11 9 16 16 H 1.48496 * 109.47196 * 330.00453 * 13 11 9 17 17 N 1.46500 * 109.47023 * 65.00406 * 5 4 2 18 18 C 1.34779 * 119.99793 * 274.99565 * 17 5 4 19 19 O 1.21721 * 120.00219 * 0.02562 * 18 17 5 20 20 C 1.46491 * 119.99684 * 179.97438 * 18 17 5 21 21 C 1.36114 * 125.71407 * 179.97438 * 20 18 17 22 22 C 1.42223 * 107.63013 * 179.97438 * 21 20 18 23 23 C 1.45594 * 140.77887 * 180.02562 * 22 21 20 24 24 C 1.31811 * 114.63293 * 179.97438 * 23 22 21 25 25 S 1.75354 * 111.24589 * 0.02853 * 24 23 22 26 26 C 1.38173 * 106.99528 * 0.02562 * 22 21 20 27 27 N 1.37458 * 108.16874 * 359.75830 * 26 22 21 28 28 H 0.96998 * 125.68715 * 180.27776 * 27 26 22 29 29 H 1.08996 * 109.47202 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47195 * 299.99873 * 1 2 3 31 31 H 1.08994 * 109.46924 * 59.99642 * 1 2 3 32 32 H 1.09000 * 109.47197 * 239.99570 * 2 1 3 33 33 H 1.08993 * 109.47728 * 179.97438 * 3 2 1 34 34 H 1.08998 * 109.47041 * 300.00517 * 3 2 1 35 35 H 1.09009 * 109.47313 * 59.99705 * 3 2 1 36 36 H 1.09002 * 109.46824 * 305.00070 * 4 2 1 37 37 H 1.08991 * 109.47210 * 185.00155 * 4 2 1 38 38 H 1.09004 * 109.47346 * 305.00346 * 7 5 4 39 39 H 1.09002 * 109.47196 * 65.00121 * 7 5 4 40 40 H 0.96995 * 119.99638 * 359.97438 * 8 7 5 41 41 H 0.97000 * 120.00137 * 179.97438 * 12 11 9 42 42 H 0.97004 * 120.00223 * 94.99655 * 17 5 4 43 43 H 1.08006 * 126.18060 * 359.97438 * 21 20 18 44 44 H 1.08004 * 122.68380 * 359.97438 * 23 22 21 45 45 H 1.07997 * 124.37694 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.6352 -2.1955 1.1880 6 1 0.5562 -2.2707 1.0527 7 6 2.0353 -2.8889 2.4918 8 7 1.7568 -4.3234 2.3875 9 6 2.0358 -5.1533 3.4404 10 1 2.4607 -4.7504 4.3478 11 6 1.7724 -6.5127 3.3413 12 7 2.0401 -7.3103 4.3534 13 14 1.0368 -7.2096 1.7720 14 1 2.1288 -7.6064 0.8472 15 1 0.2085 -8.3979 2.0988 16 1 0.1885 -6.1783 1.1225 17 7 2.3147 -2.8421 0.0626 18 6 1.7814 -2.7779 -1.1735 19 8 0.7354 -2.1823 -1.3550 20 6 2.4611 -3.4240 -2.2989 21 6 2.0286 -3.4326 -3.5895 22 6 2.9763 -4.1649 -4.3565 23 6 3.2262 -4.6008 -5.7230 24 6 4.3314 -5.3010 -5.8828 25 16 5.1836 -5.4990 -4.3631 26 6 3.9655 -4.5808 -3.4860 27 7 3.6510 -4.1221 -2.2290 28 1 4.1762 -4.2658 -1.4263 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 1.8933 -0.5139 -0.8899 33 1 3.1300 1.4425 0.0005 34 1 1.6767 1.9563 -0.8899 35 1 1.6767 1.9564 0.8900 36 1 1.6054 -0.2617 2.1370 37 1 3.1263 -0.6443 1.2952 38 1 3.0996 -2.7375 2.6721 39 1 1.4632 -2.4669 3.3181 40 1 1.3749 -4.6852 1.5727 41 1 1.8557 -8.2601 4.2843 42 1 3.1484 -3.3164 0.2071 43 1 1.1284 -2.9675 -3.9633 44 1 2.5593 -4.3691 -6.5403 45 1 4.6686 -5.7011 -6.8276 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698872354.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:33:15 Heat of formation + Delta-G solvation = 18.635651 kcal Electronic energy + Delta-G solvation = -26973.121196 eV Core-core repulsion = 23310.228436 eV Total energy + Delta-G solvation = -3662.892761 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.42960 -40.83782 -38.09757 -36.61361 -36.29592 -35.12063 -33.39211 -31.54731 -31.24904 -29.26002 -27.94732 -27.35934 -24.92503 -24.16989 -23.73649 -22.13777 -21.25902 -20.91812 -20.55827 -20.14809 -19.70759 -17.85275 -17.27910 -17.06788 -16.53600 -16.08832 -15.94253 -15.77619 -15.50882 -15.20750 -15.02075 -14.81047 -14.69404 -14.52594 -14.41980 -13.94643 -13.77553 -13.45829 -13.13940 -13.02597 -12.96046 -12.82017 -12.63223 -12.55159 -12.44703 -12.17628 -11.90035 -11.76607 -11.72005 -11.41928 -11.28752 -11.12618 -11.03783 -10.56317 -10.09571 -9.36598 -9.30619 -8.67498 -8.08407 -5.41180 0.07319 0.20904 0.41973 1.06279 1.28344 1.32426 1.37919 1.82710 1.96973 2.11051 2.33662 2.39518 3.23768 3.40968 3.62469 3.80856 3.83418 4.01175 4.05649 4.10967 4.29952 4.34438 4.44156 4.60482 4.62689 4.75227 4.79065 4.82564 4.88524 4.90664 4.97085 5.07472 5.11102 5.15646 5.18432 5.19680 5.38339 5.41472 5.48492 5.57167 5.64472 5.65340 5.72088 6.08645 6.15586 6.43423 7.01587 7.06713 7.77256 7.94765 9.12986 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.007575 B = 0.004776 C = 0.003219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3695.431904 B = 5861.631584 C = 8695.239945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.091 4.091 3 C -0.141 4.141 4 C -0.114 4.114 5 C 0.144 3.856 6 H 0.078 0.922 7 C 0.147 3.853 8 N -0.757 5.757 9 C -0.230 4.230 10 H 0.066 0.934 11 C -0.053 4.053 12 N -0.978 5.978 13 Si 0.943 3.057 14 H -0.277 1.277 15 H -0.296 1.296 16 H -0.268 1.268 17 N -0.710 5.710 18 C 0.585 3.415 19 O -0.536 6.536 20 C -0.020 4.020 21 C -0.081 4.081 22 C -0.179 4.179 23 C -0.085 4.085 24 C -0.210 4.210 25 S 0.143 5.857 26 C -0.027 4.027 27 N -0.522 5.522 28 H 0.428 0.572 29 H 0.052 0.948 30 H 0.051 0.949 31 H 0.042 0.958 32 H 0.058 0.942 33 H 0.055 0.945 34 H 0.051 0.949 35 H 0.060 0.940 36 H 0.085 0.915 37 H 0.076 0.924 38 H 0.045 0.955 39 H 0.046 0.954 40 H 0.363 0.637 41 H 0.258 0.742 42 H 0.403 0.597 43 H 0.160 0.840 44 H 0.167 0.833 45 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.855 12.025 -21.051 24.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.109 4.109 3 C -0.199 4.199 4 C -0.153 4.153 5 C 0.040 3.960 6 H 0.097 0.903 7 C 0.020 3.980 8 N -0.403 5.403 9 C -0.361 4.361 10 H 0.084 0.916 11 C -0.245 4.245 12 N -0.629 5.629 13 Si 0.772 3.228 14 H -0.203 1.203 15 H -0.223 1.223 16 H -0.193 1.193 17 N -0.360 5.360 18 C 0.372 3.628 19 O -0.414 6.414 20 C -0.133 4.133 21 C -0.109 4.109 22 C -0.192 4.192 23 C -0.115 4.115 24 C -0.344 4.344 25 S 0.397 5.603 26 C -0.256 4.256 27 N -0.126 5.126 28 H 0.268 0.732 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.061 0.939 32 H 0.076 0.924 33 H 0.074 0.926 34 H 0.070 0.930 35 H 0.079 0.921 36 H 0.104 0.896 37 H 0.094 0.906 38 H 0.063 0.937 39 H 0.064 0.936 40 H 0.196 0.804 41 H 0.067 0.933 42 H 0.238 0.762 43 H 0.177 0.823 44 H 0.184 0.816 45 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges 6.521 11.734 -20.374 24.399 hybrid contribution -1.223 -0.602 -0.252 1.387 sum 5.297 11.131 -20.626 24.029 Atomic orbital electron populations 1.21774 0.95467 1.01602 1.00328 1.21089 0.96070 0.96132 0.97641 1.21805 1.00776 0.95410 1.01860 1.21970 1.01859 0.92303 0.99185 1.21326 0.97674 0.92819 0.84219 0.90349 1.21135 0.99249 0.82558 0.95019 1.42710 1.77523 1.04366 1.15666 1.19049 1.33267 0.89184 0.94570 0.91637 1.25315 1.02567 0.96591 1.00008 1.69843 1.56014 1.04314 1.32695 0.85604 0.78681 0.77908 0.80645 1.20270 1.22286 1.19303 1.45898 1.27229 1.55733 1.07184 1.17049 0.84425 0.79443 0.81844 1.90852 1.22870 1.43481 1.84183 1.20065 0.90589 1.06616 0.96039 1.20889 0.99753 1.00363 0.89930 1.19758 0.97640 1.07579 0.94244 1.20561 0.98293 0.98593 0.94090 1.25307 0.99797 1.07615 1.01676 1.83994 1.22109 1.55599 0.98615 1.24024 1.04229 1.08100 0.89235 1.41443 1.19697 1.43713 1.07732 0.73186 0.92938 0.93035 0.93860 0.92362 0.92604 0.92954 0.92070 0.89633 0.90569 0.93664 0.93645 0.80408 0.93290 0.76194 0.82265 0.81593 0.78022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.43 8.03 71.98 0.58 -2.85 16 2 C -0.09 -2.14 2.38 -10.79 -0.03 -2.16 16 3 C -0.14 -2.71 9.19 71.98 0.66 -2.05 16 4 C -0.11 -2.61 4.36 30.60 0.13 -2.48 16 5 C 0.14 4.09 2.33 44.99 0.10 4.19 16 6 H 0.08 2.55 5.92 -2.39 -0.01 2.54 16 7 C 0.15 4.99 5.82 86.38 0.50 5.50 16 8 N -0.76 -33.44 5.24 -343.45 -1.80 -35.24 16 9 C -0.23 -12.58 10.47 84.04 0.88 -11.70 16 10 H 0.07 3.89 8.06 -2.91 -0.02 3.86 16 11 C -0.05 -3.04 5.50 84.86 0.47 -2.57 16 12 N -0.98 -61.50 13.97 21.65 0.30 -61.20 16 13 Si 0.94 45.87 27.74 68.60 1.90 47.77 16 14 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 15 H -0.30 -14.70 7.11 99.48 0.71 -14.00 16 16 H -0.27 -12.43 6.52 99.48 0.65 -11.78 16 17 N -0.71 -19.30 4.46 -446.67 -1.99 -21.30 16 18 C 0.59 17.05 6.33 86.39 0.55 17.60 16 19 O -0.54 -17.62 11.80 -4.41 -0.05 -17.67 16 20 C -0.02 -0.53 6.97 39.81 0.28 -0.25 16 21 C -0.08 -2.12 10.58 22.77 0.24 -1.88 16 22 C -0.18 -4.29 6.80 -20.41 -0.14 -4.43 16 23 C -0.09 -1.50 10.42 23.39 0.24 -1.25 16 24 C -0.21 -3.06 11.03 67.05 0.74 -2.32 16 25 S 0.14 2.57 23.24 -56.49 -1.31 1.25 16 26 C -0.03 -0.64 8.41 83.80 0.70 0.07 16 27 N -0.52 -12.43 6.08 -179.03 -1.09 -13.52 16 28 H 0.43 8.57 8.14 -92.71 -0.75 7.82 16 29 H 0.05 1.58 4.75 -2.39 -0.01 1.57 16 30 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.06 1.59 5.19 -2.39 -0.01 1.57 16 33 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 34 H 0.05 0.98 8.14 -2.39 -0.02 0.97 16 35 H 0.06 1.06 8.14 -2.38 -0.02 1.04 16 36 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 37 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 38 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 39 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 40 H 0.36 16.02 5.20 -92.71 -0.48 15.54 16 41 H 0.26 15.55 8.31 -92.71 -0.77 14.78 16 42 H 0.40 10.02 7.67 -92.71 -0.71 9.30 16 43 H 0.16 3.86 8.06 -2.91 -0.02 3.83 16 44 H 0.17 2.06 8.06 -2.91 -0.02 2.03 16 45 H 0.20 1.50 8.06 -2.91 -0.02 1.48 16 Total: -1.00 -69.57 372.59 0.91 -68.66 By element: Atomic # 1 Polarization: 38.79 SS G_CDS: -0.96 Total: 37.83 kcal Atomic # 6 Polarization: -12.51 SS G_CDS: 5.92 Total: -6.59 kcal Atomic # 7 Polarization: -126.68 SS G_CDS: -4.58 Total: -131.26 kcal Atomic # 8 Polarization: -17.62 SS G_CDS: -0.05 Total: -17.67 kcal Atomic # 14 Polarization: 45.87 SS G_CDS: 1.90 Total: 47.77 kcal Atomic # 16 Polarization: 2.57 SS G_CDS: -1.31 Total: 1.25 kcal Total: -69.57 0.91 -68.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698872354.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.297 kcal (2) G-P(sol) polarization free energy of solvation -69.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.662 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds