Wall clock time and date at job start Tue Mar 31 2020 18:43:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50703 * 109.47035 * 2 1 4 4 C 1.50693 * 119.99726 * 264.85867 * 3 2 1 5 5 C 1.32997 * 120.00108 * 84.85843 * 3 2 1 6 6 C 1.47097 * 119.99611 * 352.86176 * 5 3 2 7 7 O 1.21618 * 120.00711 * 353.21151 * 6 5 3 8 8 N 1.34784 * 119.99855 * 173.21209 * 6 5 3 9 9 C 1.47066 * 120.80735 * 175.31091 * 8 6 5 10 10 C 1.53305 * 108.60276 * 115.21860 * 9 8 6 11 11 C 1.50988 * 108.96052 * 45.02210 * 10 9 8 12 12 S 1.75956 * 126.02667 * 162.52486 * 11 10 9 13 13 C 1.70902 * 90.30723 * 179.63364 * 12 11 10 14 14 C 1.50700 * 124.92260 * 180.02562 * 13 12 11 15 15 N 1.46497 * 109.47697 * 270.00557 * 14 13 12 16 16 C 1.36932 * 120.00218 * 179.72847 * 15 14 13 17 17 H 1.07996 * 119.99952 * 0.27222 * 16 15 14 18 18 C 1.38817 * 120.00054 * 180.27743 * 16 15 14 19 19 N 1.31617 * 120.00176 * 179.97438 * 18 16 15 20 20 Si 1.86795 * 119.99837 * 359.97438 * 18 16 15 21 21 H 1.48501 * 109.47233 * 90.00137 * 20 18 16 22 22 H 1.48506 * 109.47208 * 210.00234 * 20 18 16 23 23 H 1.48501 * 109.47392 * 330.00124 * 20 18 16 24 24 N 1.28666 * 110.14889 * 0.33725 * 13 12 11 25 25 C 1.32449 * 117.82414 * 359.55559 * 24 13 12 26 26 C 1.47034 * 120.80109 * 355.29391 * 8 6 5 27 27 H 1.09002 * 109.46980 * 299.99750 * 1 2 3 28 28 H 1.09000 * 109.47035 * 60.00040 * 1 2 3 29 29 H 1.09006 * 109.46912 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47243 * 239.99787 * 2 1 3 31 31 H 1.09000 * 109.47035 * 119.99959 * 2 1 3 32 32 H 1.09005 * 109.47406 * 269.99757 * 4 3 2 33 33 H 1.08997 * 109.47599 * 30.00064 * 4 3 2 34 34 H 1.09009 * 109.47277 * 150.00120 * 4 3 2 35 35 H 1.07997 * 119.99954 * 172.86294 * 5 3 2 36 36 H 1.08999 * 109.61793 * 234.95931 * 9 8 6 37 37 H 1.09005 * 109.61590 * 355.49374 * 9 8 6 38 38 H 1.09001 * 109.56412 * 285.17415 * 10 9 8 39 39 H 1.09002 * 109.54713 * 164.86392 * 10 9 8 40 40 H 1.09001 * 109.46620 * 150.00582 * 14 13 12 41 41 H 1.09004 * 109.47255 * 30.01205 * 14 13 12 42 42 H 0.97000 * 119.99471 * 0.02562 * 15 14 13 43 43 H 0.96993 * 120.00281 * 179.97438 * 19 18 16 44 44 H 1.08999 * 109.81482 * 105.72530 * 26 8 6 45 45 H 1.08997 * 109.81749 * 344.81117 * 26 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3937 2.0922 -1.2998 5 6 2.1566 2.0822 1.1471 6 6 1.6585 1.4873 2.3968 7 8 1.0242 0.4500 2.3660 8 7 1.9048 2.0917 3.5760 9 6 1.3297 1.5694 4.8247 10 6 2.4728 1.0889 5.7262 11 6 3.5695 2.1267 5.7230 12 16 4.8703 2.2613 6.9002 13 6 5.4993 3.6128 6.0643 14 6 6.7282 4.3839 6.4720 15 7 6.3446 5.4734 7.3732 16 6 7.3015 6.3109 7.8810 17 1 8.3385 6.1711 7.6137 18 6 6.9387 7.3397 8.7395 19 7 7.8585 8.1444 9.2281 20 14 5.1450 7.5819 9.2014 21 1 4.8363 6.7905 10.4194 22 1 4.8926 9.0207 9.4687 23 1 4.2801 7.1270 8.0832 24 7 4.7678 3.8803 5.0402 25 6 3.7179 3.1060 4.8112 26 6 2.7555 3.2890 3.6451 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 3.4459 1.9129 -1.5212 33 1 1.7791 1.6847 -2.1025 34 1 2.2177 3.1647 -1.2161 35 1 2.6233 3.0561 1.1611 36 1 0.7728 2.3589 5.3294 37 1 0.6651 0.7350 4.6006 38 1 2.8635 0.1442 5.3480 39 1 2.1030 0.9519 6.7424 40 1 7.2081 4.7979 5.5851 41 1 7.4228 3.7171 6.9830 42 1 5.4133 5.5987 7.6135 43 1 7.6049 8.8634 9.8276 44 1 2.1380 4.1719 3.8108 45 1 3.3162 3.3981 2.7168 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001707278543.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:43:30 Heat of formation + Delta-G solvation = 45.835823 kcal Electronic energy + Delta-G solvation = -26025.389615 eV Core-core repulsion = 22363.676342 eV Total energy + Delta-G solvation = -3661.713273 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.80333 -39.58271 -37.17274 -35.83473 -34.86384 -32.92080 -31.73328 -31.02123 -30.12150 -28.50154 -27.21203 -26.02938 -24.18732 -23.56017 -23.03379 -21.75592 -20.55687 -18.87558 -18.44129 -17.96186 -17.63118 -17.05970 -16.26574 -15.67060 -15.14606 -15.01534 -14.80989 -14.74261 -14.26985 -14.03160 -13.87738 -13.74494 -13.31071 -13.21588 -13.13231 -13.02115 -12.71443 -12.67113 -12.42707 -12.34841 -12.20123 -11.99425 -11.61987 -11.32420 -11.28678 -11.20321 -10.92586 -10.89892 -10.25050 -9.80121 -9.67644 -9.47559 -9.43334 -9.16494 -9.00382 -8.89485 -8.57000 -7.36494 -5.83865 -3.21819 0.74709 1.05127 1.40494 1.85618 2.61704 2.78555 3.00364 3.34134 3.38280 3.41737 3.97824 4.23428 4.41046 4.53593 4.53694 4.66013 4.78122 4.90667 4.94239 5.04524 5.11491 5.12428 5.14590 5.19493 5.30495 5.33693 5.39659 5.44692 5.44781 5.51001 5.51988 5.61818 5.66185 5.70631 5.87671 6.04756 6.09021 6.13926 6.18566 6.30778 6.34041 6.35659 7.11470 7.83978 7.87773 7.94493 8.33416 9.09316 9.81828 9.99966 11.33684 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.019707 B = 0.002543 C = 0.002442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1420.439269 B =11008.159436 C =11462.863731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.097 4.097 3 C -0.023 4.023 4 C -0.129 4.129 5 C -0.240 4.240 6 C 0.554 3.446 7 O -0.534 6.534 8 N -0.611 5.611 9 C 0.117 3.883 10 C -0.053 4.053 11 C -0.234 4.234 12 S 0.134 5.866 13 C 0.068 3.932 14 C 0.230 3.770 15 N -0.746 5.746 16 C -0.249 4.249 17 H 0.095 0.905 18 C 0.011 3.989 19 N -0.929 5.929 20 Si 0.881 3.119 21 H -0.282 1.282 22 H -0.288 1.288 23 H -0.277 1.277 24 N -0.462 5.462 25 C 0.045 3.955 26 C 0.194 3.806 27 H 0.072 0.928 28 H 0.041 0.959 29 H 0.052 0.948 30 H 0.059 0.941 31 H 0.093 0.907 32 H 0.079 0.921 33 H 0.073 0.927 34 H 0.072 0.928 35 H 0.130 0.870 36 H 0.076 0.924 37 H 0.103 0.897 38 H 0.083 0.917 39 H 0.089 0.911 40 H 0.062 0.938 41 H 0.052 0.948 42 H 0.364 0.636 43 H 0.261 0.739 44 H 0.090 0.910 45 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.940 -17.281 -17.187 28.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.134 4.134 3 C -0.024 4.024 4 C -0.185 4.185 5 C -0.261 4.261 6 C 0.347 3.653 7 O -0.413 6.413 8 N -0.344 5.344 9 C -0.007 4.007 10 C -0.094 4.094 11 C -0.356 4.356 12 S 0.392 5.608 13 C -0.211 4.211 14 C 0.100 3.900 15 N -0.394 5.394 16 C -0.378 4.378 17 H 0.113 0.887 18 C -0.185 4.185 19 N -0.576 5.576 20 Si 0.711 3.289 21 H -0.209 1.209 22 H -0.215 1.215 23 H -0.203 1.203 24 N -0.176 5.176 25 C -0.088 4.088 26 C 0.068 3.932 27 H 0.090 0.910 28 H 0.060 0.940 29 H 0.071 0.929 30 H 0.078 0.922 31 H 0.111 0.889 32 H 0.098 0.902 33 H 0.092 0.908 34 H 0.091 0.909 35 H 0.148 0.852 36 H 0.094 0.906 37 H 0.122 0.878 38 H 0.102 0.898 39 H 0.107 0.893 40 H 0.080 0.920 41 H 0.070 0.930 42 H 0.196 0.804 43 H 0.071 0.929 44 H 0.108 0.892 45 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -14.546 -17.803 -16.536 28.319 hybrid contribution -1.521 0.727 -0.095 1.688 sum -16.067 -17.076 -16.631 28.746 Atomic orbital electron populations 1.21619 0.94029 1.01720 1.01777 1.20862 0.97277 0.92336 1.02899 1.22619 0.89817 0.95614 0.94389 1.21025 1.02454 1.00722 0.94331 1.22445 1.08552 1.02908 0.92151 1.18512 0.79725 0.83556 0.83529 1.90734 1.41269 1.22691 1.86644 1.47952 1.49774 1.29472 1.07193 1.21622 0.94943 1.00503 0.83610 1.20479 0.92192 0.95669 1.01013 1.25880 1.04247 1.04847 1.00588 1.83993 1.19675 1.28987 1.28145 1.27352 1.01793 0.98231 0.93766 1.19303 0.87150 0.88852 0.94740 1.42610 1.06774 1.34173 1.55816 1.18992 0.90189 1.06736 1.21883 0.88744 1.24628 0.96969 0.97562 0.99387 1.69686 1.31688 1.20015 1.36201 0.86595 0.86389 0.77451 0.78465 1.20863 1.21453 1.20332 1.65784 1.04888 1.27904 1.19044 1.20898 0.95779 0.93466 0.98677 1.20264 0.89787 0.87362 0.95782 0.90957 0.93951 0.92866 0.92195 0.88879 0.90248 0.90828 0.90898 0.85210 0.90569 0.87842 0.89818 0.89260 0.92031 0.93033 0.80351 0.92864 0.89197 0.87593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.18 9.31 37.16 0.35 -0.84 16 2 C -0.10 -0.85 5.34 -27.88 -0.15 -1.00 16 3 C -0.02 -0.19 5.36 -101.17 -0.54 -0.73 16 4 C -0.13 -0.74 10.01 36.00 0.36 -0.37 16 5 C -0.24 -2.20 8.78 -37.81 -0.33 -2.53 16 6 C 0.55 6.12 7.46 -12.66 -0.09 6.03 16 7 O -0.53 -6.73 10.47 5.26 0.06 -6.68 16 8 N -0.61 -6.47 2.92 -174.43 -0.51 -6.98 16 9 C 0.12 1.12 6.40 -3.58 -0.02 1.10 16 10 C -0.05 -0.53 6.44 -27.58 -0.18 -0.71 16 11 C -0.23 -3.09 6.43 -35.45 -0.23 -3.32 16 12 S 0.13 1.93 23.17 -107.50 -2.49 -0.56 16 13 C 0.07 1.18 6.75 -13.60 -0.09 1.09 16 14 C 0.23 4.49 6.84 -5.20 -0.04 4.46 16 15 N -0.75 -17.87 5.40 -61.09 -0.33 -18.20 16 16 C -0.25 -6.94 10.47 -15.06 -0.16 -7.10 16 17 H 0.09 2.77 8.06 -52.49 -0.42 2.35 16 18 C 0.01 0.32 5.50 -17.43 -0.10 0.23 16 19 N -0.93 -28.81 13.97 55.49 0.78 -28.03 16 20 Si 0.88 22.13 27.73 -169.99 -4.71 17.42 16 21 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 22 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 23 H -0.28 -6.73 6.52 56.52 0.37 -6.36 16 24 N -0.46 -7.93 10.51 -7.28 -0.08 -8.00 16 25 C 0.05 0.65 6.87 -82.81 -0.57 0.08 16 26 C 0.19 2.13 6.56 -4.11 -0.03 2.11 16 27 H 0.07 0.77 6.09 -51.93 -0.32 0.46 16 28 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.43 8.09 -51.93 -0.42 0.01 16 31 H 0.09 1.01 6.13 -51.93 -0.32 0.69 16 32 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.07 0.35 8.12 -51.93 -0.42 -0.07 16 34 H 0.07 0.37 8.07 -51.92 -0.42 -0.05 16 35 H 0.13 1.00 6.26 -52.49 -0.33 0.67 16 36 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 37 H 0.10 0.96 7.03 -51.93 -0.37 0.59 16 38 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 41 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 42 H 0.36 8.74 5.52 -40.82 -0.23 8.52 16 43 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 44 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 45 H 0.11 1.04 5.77 -51.93 -0.30 0.74 16 LS Contribution 374.14 15.07 5.64 5.64 Total: -1.00 -32.78 374.14 -9.98 -42.76 By element: Atomic # 1 Polarization: 10.67 SS G_CDS: -6.51 Total: 4.16 kcal Atomic # 6 Polarization: 0.30 SS G_CDS: -1.82 Total: -1.52 kcal Atomic # 7 Polarization: -61.07 SS G_CDS: -0.14 Total: -61.21 kcal Atomic # 8 Polarization: -6.73 SS G_CDS: 0.06 Total: -6.68 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -4.71 Total: 17.42 kcal Atomic # 16 Polarization: 1.93 SS G_CDS: -2.49 Total: -0.56 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -32.78 -9.98 -42.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001707278543.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.593 kcal (2) G-P(sol) polarization free energy of solvation -32.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.757 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds