Wall clock time and date at job start Tue Mar 31 2020 18:43:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50703 * 109.47035 * 2 1 4 4 C 1.50693 * 119.99726 * 264.85867 * 3 2 1 5 5 C 1.32997 * 120.00108 * 84.85843 * 3 2 1 6 6 C 1.47097 * 119.99611 * 352.86176 * 5 3 2 7 7 O 1.21618 * 120.00711 * 353.21151 * 6 5 3 8 8 N 1.34784 * 119.99855 * 173.21209 * 6 5 3 9 9 C 1.47066 * 120.80735 * 175.31091 * 8 6 5 10 10 C 1.53305 * 108.60276 * 115.21860 * 9 8 6 11 11 C 1.50988 * 108.96052 * 45.02210 * 10 9 8 12 12 S 1.75956 * 126.02667 * 162.52486 * 11 10 9 13 13 C 1.70902 * 90.30723 * 179.63364 * 12 11 10 14 14 C 1.50700 * 124.92260 * 180.02562 * 13 12 11 15 15 N 1.46497 * 109.47697 * 270.00557 * 14 13 12 16 16 C 1.36932 * 120.00218 * 179.72847 * 15 14 13 17 17 H 1.07996 * 119.99952 * 0.27222 * 16 15 14 18 18 C 1.38817 * 120.00054 * 180.27743 * 16 15 14 19 19 N 1.31617 * 120.00176 * 179.97438 * 18 16 15 20 20 Si 1.86795 * 119.99837 * 359.97438 * 18 16 15 21 21 H 1.48501 * 109.47233 * 90.00137 * 20 18 16 22 22 H 1.48506 * 109.47208 * 210.00234 * 20 18 16 23 23 H 1.48501 * 109.47392 * 330.00124 * 20 18 16 24 24 N 1.28666 * 110.14889 * 0.33725 * 13 12 11 25 25 C 1.32449 * 117.82414 * 359.55559 * 24 13 12 26 26 C 1.47034 * 120.80109 * 355.29391 * 8 6 5 27 27 H 1.09002 * 109.46980 * 299.99750 * 1 2 3 28 28 H 1.09000 * 109.47035 * 60.00040 * 1 2 3 29 29 H 1.09006 * 109.46912 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47243 * 239.99787 * 2 1 3 31 31 H 1.09000 * 109.47035 * 119.99959 * 2 1 3 32 32 H 1.09005 * 109.47406 * 269.99757 * 4 3 2 33 33 H 1.08997 * 109.47599 * 30.00064 * 4 3 2 34 34 H 1.09009 * 109.47277 * 150.00120 * 4 3 2 35 35 H 1.07997 * 119.99954 * 172.86294 * 5 3 2 36 36 H 1.08999 * 109.61793 * 234.95931 * 9 8 6 37 37 H 1.09005 * 109.61590 * 355.49374 * 9 8 6 38 38 H 1.09001 * 109.56412 * 285.17415 * 10 9 8 39 39 H 1.09002 * 109.54713 * 164.86392 * 10 9 8 40 40 H 1.09001 * 109.46620 * 150.00582 * 14 13 12 41 41 H 1.09004 * 109.47255 * 30.01205 * 14 13 12 42 42 H 0.97000 * 119.99471 * 0.02562 * 15 14 13 43 43 H 0.96993 * 120.00281 * 179.97438 * 19 18 16 44 44 H 1.08999 * 109.81482 * 105.72530 * 26 8 6 45 45 H 1.08997 * 109.81749 * 344.81117 * 26 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3937 2.0922 -1.2998 5 6 2.1566 2.0822 1.1471 6 6 1.6585 1.4873 2.3968 7 8 1.0242 0.4500 2.3660 8 7 1.9048 2.0917 3.5760 9 6 1.3297 1.5694 4.8247 10 6 2.4728 1.0889 5.7262 11 6 3.5695 2.1267 5.7230 12 16 4.8703 2.2613 6.9002 13 6 5.4993 3.6128 6.0643 14 6 6.7282 4.3839 6.4720 15 7 6.3446 5.4734 7.3732 16 6 7.3015 6.3109 7.8810 17 1 8.3385 6.1711 7.6137 18 6 6.9387 7.3397 8.7395 19 7 7.8585 8.1444 9.2281 20 14 5.1450 7.5819 9.2014 21 1 4.8363 6.7905 10.4194 22 1 4.8926 9.0207 9.4687 23 1 4.2801 7.1270 8.0832 24 7 4.7678 3.8803 5.0402 25 6 3.7179 3.1060 4.8112 26 6 2.7555 3.2890 3.6451 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 3.4459 1.9129 -1.5212 33 1 1.7791 1.6847 -2.1025 34 1 2.2177 3.1647 -1.2161 35 1 2.6233 3.0561 1.1611 36 1 0.7728 2.3589 5.3294 37 1 0.6651 0.7350 4.6006 38 1 2.8635 0.1442 5.3480 39 1 2.1030 0.9519 6.7424 40 1 7.2081 4.7979 5.5851 41 1 7.4228 3.7171 6.9830 42 1 5.4133 5.5987 7.6135 43 1 7.6049 8.8634 9.8276 44 1 2.1380 4.1719 3.8108 45 1 3.3162 3.3981 2.7168 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001707278543.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:43:29 Heat of formation + Delta-G solvation = 25.663281 kcal Electronic energy + Delta-G solvation = -26026.264362 eV Core-core repulsion = 22363.676342 eV Total energy + Delta-G solvation = -3662.588020 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.71318 -40.59401 -38.07452 -36.88254 -36.35729 -33.96603 -33.52694 -31.68407 -31.42510 -29.11589 -28.72627 -26.90133 -25.16276 -24.82465 -24.06179 -23.29469 -21.45642 -20.15740 -19.70185 -19.06604 -18.78371 -17.98489 -17.09772 -16.86562 -16.55627 -16.20555 -15.86544 -15.72975 -15.46490 -15.05936 -14.91297 -14.87951 -14.50357 -14.20418 -14.17720 -14.02889 -13.85985 -13.66237 -13.34913 -13.24681 -13.15450 -13.03578 -12.88352 -12.83385 -12.43144 -12.20637 -12.15788 -11.94571 -11.86506 -11.64143 -11.09846 -10.66885 -10.59457 -10.27467 -10.13167 -9.74040 -9.65137 -9.41875 -8.06601 -5.42668 -0.42591 0.25054 0.38209 0.69360 1.34970 1.37056 1.44108 1.59576 1.83959 2.23594 2.44036 2.89684 3.25146 3.49731 3.64680 3.69930 3.76745 3.79884 3.86341 4.09940 4.18669 4.24981 4.30454 4.44946 4.46485 4.54443 4.58137 4.66253 4.69553 4.73830 4.75125 4.81173 4.82734 4.84793 4.98671 5.09461 5.10612 5.20597 5.36511 5.46063 5.53037 5.68181 5.68536 6.15153 6.31165 6.67884 6.98218 7.13994 7.70555 7.90561 9.13971 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.019707 B = 0.002543 C = 0.002442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1420.439269 B =11008.159436 C =11462.863731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.098 4.098 3 C -0.016 4.016 4 C -0.128 4.128 5 C -0.258 4.258 6 C 0.548 3.452 7 O -0.554 6.554 8 N -0.612 5.612 9 C 0.116 3.884 10 C -0.051 4.051 11 C -0.221 4.221 12 S 0.166 5.834 13 C 0.031 3.969 14 C 0.231 3.769 15 N -0.749 5.749 16 C -0.236 4.236 17 H 0.068 0.932 18 C -0.054 4.054 19 N -0.976 5.976 20 Si 0.949 3.051 21 H -0.273 1.273 22 H -0.291 1.291 23 H -0.263 1.263 24 N -0.477 5.477 25 C 0.026 3.974 26 C 0.199 3.801 27 H 0.051 0.949 28 H 0.056 0.944 29 H 0.054 0.946 30 H 0.076 0.924 31 H 0.070 0.930 32 H 0.089 0.911 33 H 0.085 0.915 34 H 0.080 0.920 35 H 0.144 0.856 36 H 0.087 0.913 37 H 0.106 0.894 38 H 0.088 0.912 39 H 0.112 0.888 40 H 0.054 0.946 41 H 0.063 0.937 42 H 0.364 0.636 43 H 0.260 0.740 44 H 0.101 0.899 45 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.217 -18.560 -18.364 31.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.135 4.135 3 C -0.018 4.018 4 C -0.184 4.184 5 C -0.278 4.278 6 C 0.342 3.658 7 O -0.436 6.436 8 N -0.344 5.344 9 C -0.007 4.007 10 C -0.091 4.091 11 C -0.343 4.343 12 S 0.423 5.577 13 C -0.247 4.247 14 C 0.102 3.898 15 N -0.396 5.396 16 C -0.367 4.367 17 H 0.086 0.914 18 C -0.246 4.246 19 N -0.626 5.626 20 Si 0.776 3.224 21 H -0.199 1.199 22 H -0.218 1.218 23 H -0.189 1.189 24 N -0.193 5.193 25 C -0.107 4.107 26 C 0.073 3.927 27 H 0.070 0.930 28 H 0.075 0.925 29 H 0.073 0.927 30 H 0.095 0.905 31 H 0.088 0.912 32 H 0.107 0.893 33 H 0.104 0.896 34 H 0.099 0.901 35 H 0.161 0.839 36 H 0.106 0.894 37 H 0.124 0.876 38 H 0.106 0.894 39 H 0.130 0.870 40 H 0.072 0.928 41 H 0.081 0.919 42 H 0.197 0.803 43 H 0.069 0.931 44 H 0.118 0.882 45 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -16.824 -19.116 -17.737 31.034 hybrid contribution -0.801 0.960 0.174 1.262 sum -17.625 -18.156 -17.563 30.801 Atomic orbital electron populations 1.21557 0.94064 1.01713 1.01380 1.20844 0.97236 0.92853 1.02575 1.22884 0.88403 0.95190 0.95318 1.21086 1.03184 1.01005 0.93109 1.22539 1.09820 1.03768 0.91690 1.18854 0.79450 0.83315 0.84153 1.90731 1.42281 1.23600 1.86958 1.48001 1.49569 1.29346 1.07508 1.21708 0.94763 1.01025 0.83241 1.20628 0.91285 0.94668 1.02528 1.26367 1.03986 1.04674 0.99298 1.83798 1.19536 1.26838 1.27495 1.26810 1.02152 1.00241 0.95513 1.19241 0.88839 0.88074 0.93628 1.42585 1.05960 1.34674 1.56417 1.18985 0.89964 1.06807 1.20933 0.91419 1.25403 1.01463 0.97724 1.00056 1.69849 1.34032 1.21089 1.37621 0.85504 0.81102 0.77101 0.78664 1.19859 1.21782 1.18876 1.65740 1.05533 1.28885 1.19101 1.21327 0.95736 0.93578 1.00024 1.20324 0.89476 0.87817 0.95074 0.93018 0.92541 0.92736 0.90499 0.91179 0.89301 0.89645 0.90111 0.83874 0.89449 0.87562 0.89407 0.87027 0.92809 0.91950 0.80266 0.93078 0.88154 0.86596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.13 9.31 71.98 0.67 -1.46 16 2 C -0.10 -1.59 5.34 29.85 0.16 -1.43 16 3 C -0.02 -0.24 5.36 -17.62 -0.09 -0.33 16 4 C -0.13 -1.11 10.01 71.23 0.71 -0.40 16 5 C -0.26 -4.31 8.78 23.43 0.21 -4.11 16 6 C 0.55 11.42 7.46 86.57 0.65 12.06 16 7 O -0.55 -13.58 10.47 -4.09 -0.04 -13.62 16 8 N -0.61 -11.81 2.92 -824.03 -2.40 -14.21 16 9 C 0.12 1.95 6.40 86.37 0.55 2.50 16 10 C -0.05 -0.87 6.44 30.04 0.19 -0.68 16 11 C -0.22 -5.34 6.43 24.95 0.16 -5.17 16 12 S 0.17 4.46 23.17 -56.49 -1.31 3.15 16 13 C 0.03 1.04 6.75 88.57 0.60 1.64 16 14 C 0.23 9.04 6.84 85.63 0.59 9.62 16 15 N -0.75 -35.68 5.40 -347.18 -1.87 -37.55 16 16 C -0.24 -13.40 10.47 84.04 0.88 -12.52 16 17 H 0.07 4.12 8.06 -2.91 -0.02 4.10 16 18 C -0.05 -3.18 5.50 84.86 0.47 -2.71 16 19 N -0.98 -61.88 13.97 21.65 0.30 -61.58 16 20 Si 0.95 45.72 27.73 68.60 1.90 47.62 16 21 H -0.27 -12.64 7.11 99.48 0.71 -11.94 16 22 H -0.29 -14.09 7.11 99.48 0.71 -13.39 16 23 H -0.26 -11.95 6.52 99.48 0.65 -11.30 16 24 N -0.48 -15.84 10.51 -176.96 -1.86 -17.70 16 25 C 0.03 0.70 6.87 42.15 0.29 0.99 16 26 C 0.20 3.98 6.56 86.05 0.56 4.55 16 27 H 0.05 1.08 6.09 -2.39 -0.01 1.06 16 28 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.05 0.85 8.14 -2.38 -0.02 0.83 16 30 H 0.08 0.96 8.09 -2.39 -0.02 0.94 16 31 H 0.07 1.49 6.13 -2.39 -0.01 1.47 16 32 H 0.09 0.66 8.14 -2.38 -0.02 0.64 16 33 H 0.08 0.56 8.12 -2.39 -0.02 0.54 16 34 H 0.08 0.61 8.07 -2.38 -0.02 0.59 16 35 H 0.14 1.92 6.26 -2.91 -0.02 1.90 16 36 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 37 H 0.11 1.77 7.03 -2.38 -0.02 1.75 16 38 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 39 H 0.11 1.48 8.14 -2.39 -0.02 1.46 16 40 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 41 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 42 H 0.36 17.08 5.52 -92.71 -0.51 16.57 16 43 H 0.26 15.68 8.31 -92.71 -0.77 14.91 16 44 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 45 H 0.12 2.07 5.77 -2.39 -0.01 2.05 16 Total: -1.00 -71.19 374.14 1.75 -69.44 By element: Atomic # 1 Polarization: 21.45 SS G_CDS: 0.45 Total: 21.90 kcal Atomic # 6 Polarization: -4.03 SS G_CDS: 6.59 Total: 2.56 kcal Atomic # 7 Polarization: -125.21 SS G_CDS: -5.84 Total: -131.04 kcal Atomic # 8 Polarization: -13.58 SS G_CDS: -0.04 Total: -13.62 kcal Atomic # 14 Polarization: 45.72 SS G_CDS: 1.90 Total: 47.62 kcal Atomic # 16 Polarization: 4.46 SS G_CDS: -1.31 Total: 3.15 kcal Total: -71.19 1.75 -69.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001707278543.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.100 kcal (2) G-P(sol) polarization free energy of solvation -71.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.437 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds