Wall clock time and date at job start Tue Mar 31 2020 18:46:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47164 * 2 1 4 4 C 1.52996 * 109.47178 * 120.00289 * 2 1 3 5 5 H 1.09000 * 109.47521 * 299.99961 * 4 2 1 6 6 C 1.53003 * 109.47332 * 60.00127 * 4 2 1 7 7 C 1.53002 * 109.47269 * 185.00423 * 6 4 2 8 8 N 1.46498 * 109.47272 * 180.02562 * 7 6 4 9 9 C 1.34773 * 120.00043 * 179.97438 * 8 7 6 10 10 O 1.21716 * 120.00280 * 359.97438 * 9 8 7 11 11 C 1.46505 * 119.99859 * 179.97438 * 9 8 7 12 12 C 1.36108 * 125.71128 * 180.02562 * 11 9 8 13 13 C 1.42223 * 107.62749 * 179.97438 * 12 11 9 14 14 C 1.45593 * 140.78099 * 180.02562 * 13 12 11 15 15 C 1.31812 * 114.63455 * 180.02562 * 14 13 12 16 16 S 1.75356 * 111.24306 * 359.96700 * 15 14 13 17 17 C 1.38172 * 106.99404 * 0.02562 * 13 12 11 18 18 N 1.37458 * 108.16862 * 359.75506 * 17 13 12 19 19 H 0.97000 * 125.68217 * 180.28217 * 18 17 13 20 20 N 1.46505 * 109.47130 * 179.97438 * 4 2 1 21 21 C 1.36931 * 119.99788 * 84.99932 * 20 4 2 22 22 H 1.08002 * 120.00438 * 0.02562 * 21 20 4 23 23 C 1.38817 * 119.99680 * 179.72358 * 21 20 4 24 24 N 1.31614 * 119.99888 * 0.27479 * 23 21 20 25 25 Si 1.86803 * 119.99862 * 180.27671 * 23 21 20 26 26 H 1.48498 * 109.47174 * 90.00121 * 25 23 21 27 27 H 1.48501 * 109.47062 * 210.00072 * 25 23 21 28 28 H 1.48504 * 109.46913 * 329.99871 * 25 23 21 29 29 H 1.09000 * 109.46863 * 299.99348 * 1 2 3 30 30 H 1.08994 * 109.47323 * 60.00002 * 1 2 3 31 31 H 1.08998 * 109.47238 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47096 * 239.99921 * 2 1 3 33 33 H 1.09003 * 109.47086 * 180.02562 * 3 2 1 34 34 H 1.08994 * 109.46999 * 300.00196 * 3 2 1 35 35 H 1.09000 * 109.46698 * 60.00552 * 3 2 1 36 36 H 1.09000 * 109.46805 * 304.99883 * 6 4 2 37 37 H 1.08992 * 109.47408 * 64.99820 * 6 4 2 38 38 H 1.09000 * 109.46766 * 299.99484 * 7 6 4 39 39 H 1.08992 * 109.47398 * 59.99391 * 7 6 4 40 40 H 0.97004 * 119.99849 * 359.97438 * 8 7 6 41 41 H 1.08003 * 126.18771 * 359.97380 * 12 11 9 42 42 H 1.08003 * 122.68406 * 359.94190 * 14 13 12 43 43 H 1.07999 * 124.38059 * 179.97438 * 15 14 13 44 44 H 0.97000 * 119.99792 * 264.99726 * 20 4 2 45 45 H 0.97005 * 119.99715 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6767 -0.2076 2.1392 6 6 1.5300 -2.1638 1.2491 7 6 1.9347 -2.8479 2.5565 8 7 1.4470 -4.2293 2.5562 9 6 1.6879 -5.0292 3.6138 10 8 2.3112 -4.6042 4.5689 11 6 1.1997 -6.4105 3.6137 12 6 1.3752 -7.3153 4.6152 13 6 0.7482 -8.5276 4.2153 14 6 0.5042 -9.8817 4.6913 15 6 -0.1768 -10.6427 3.8578 16 16 -0.5916 -9.7696 2.3947 17 6 0.2067 -8.3082 2.9632 18 7 0.4796 -7.0110 2.5994 19 1 0.2124 -6.5883 1.7683 20 7 3.5050 -0.7218 1.2488 21 6 4.1901 0.3528 1.7498 22 1 3.6506 1.2005 2.1454 23 6 5.5783 0.3498 1.7547 24 7 6.2359 -0.6835 1.2730 25 14 6.5130 1.8124 2.4451 26 1 6.7549 1.6054 3.8956 27 1 7.8133 1.9462 1.7406 28 1 5.7137 3.0484 2.2480 29 1 -0.3633 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 3.1300 1.4425 -0.0005 34 1 1.6766 1.9563 -0.8899 35 1 1.6767 1.9562 0.8900 36 1 0.4437 -2.1651 1.1596 37 1 1.9646 -2.7028 0.4074 38 1 3.0210 -2.8466 2.6460 39 1 1.5002 -2.3089 3.3983 40 1 0.9506 -4.5682 1.7948 41 1 1.8964 -7.1437 5.5455 42 1 0.8543 -10.2349 5.6500 43 1 -0.4447 -11.6709 4.0511 44 1 3.9897 -1.4834 0.8938 45 1 7.2059 -0.6854 1.2761 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725444765.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:46:18 Heat of formation + Delta-G solvation = 32.514518 kcal Electronic energy + Delta-G solvation = -25715.309625 eV Core-core repulsion = 22053.018697 eV Total energy + Delta-G solvation = -3662.290928 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 2.07 seconds Orbital eigenvalues (eV) -41.51740 -39.19871 -37.48503 -35.60945 -34.82872 -33.07231 -31.32232 -30.70337 -29.74893 -28.55864 -26.40277 -25.40256 -23.57260 -23.16049 -22.37330 -21.18978 -20.33181 -19.68160 -19.42479 -19.13925 -17.18418 -16.84789 -15.84180 -15.66562 -15.26147 -15.12123 -14.82753 -14.59485 -14.24240 -13.99334 -13.73007 -13.66309 -13.53713 -13.28383 -12.88739 -12.76068 -12.12069 -12.04126 -11.94336 -11.73258 -11.65624 -11.26675 -11.12017 -10.92582 -10.77973 -10.66062 -10.50077 -10.32613 -10.14276 -10.05906 -9.83777 -9.74371 -9.46818 -9.01365 -8.83541 -8.54679 -7.93453 -6.94611 -5.75581 -3.03398 0.78138 1.05249 1.20070 1.69158 2.66525 2.83095 3.10171 3.34218 3.44994 3.50357 3.51735 4.40942 4.60165 4.63001 4.77652 5.12681 5.17513 5.31044 5.33325 5.43734 5.48948 5.51457 5.65400 5.68046 5.83220 5.85720 5.93585 5.95359 6.12842 6.16508 6.18922 6.23440 6.32664 6.36425 6.43739 6.49207 6.60645 6.64450 6.67245 6.79707 6.86719 7.09308 7.31465 7.46267 7.72738 8.14640 8.42449 9.54096 10.10032 10.44757 11.46870 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.015990 B = 0.002296 C = 0.002087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1750.622442 B =12193.999416 C =13411.195519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.111 4.111 3 C -0.140 4.140 4 C 0.186 3.814 5 H 0.050 0.950 6 C -0.137 4.137 7 C 0.122 3.878 8 N -0.726 5.726 9 C 0.582 3.418 10 O -0.516 6.516 11 C -0.002 4.002 12 C -0.071 4.071 13 C -0.163 4.163 14 C -0.068 4.068 15 C -0.224 4.224 16 S 0.129 5.871 17 C -0.011 4.011 18 N -0.525 5.525 19 H 0.420 0.580 20 N -0.721 5.721 21 C -0.232 4.232 22 H 0.072 0.928 23 C -0.013 4.013 24 N -0.931 5.931 25 Si 0.901 3.099 26 H -0.290 1.290 27 H -0.293 1.293 28 H -0.282 1.282 29 H 0.048 0.952 30 H 0.043 0.957 31 H 0.048 0.952 32 H 0.059 0.941 33 H 0.087 0.913 34 H 0.029 0.971 35 H 0.040 0.960 36 H 0.066 0.934 37 H 0.065 0.935 38 H 0.089 0.911 39 H 0.067 0.933 40 H 0.390 0.610 41 H 0.158 0.842 42 H 0.145 0.855 43 H 0.170 0.830 44 H 0.383 0.617 45 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.362 -17.642 0.271 24.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.132 4.132 3 C -0.198 4.198 4 C 0.075 3.925 5 H 0.068 0.932 6 C -0.175 4.175 7 C 0.000 4.000 8 N -0.376 5.376 9 C 0.367 3.633 10 O -0.391 6.391 11 C -0.115 4.115 12 C -0.099 4.099 13 C -0.175 4.175 14 C -0.099 4.099 15 C -0.357 4.357 16 S 0.382 5.618 17 C -0.240 4.240 18 N -0.129 5.129 19 H 0.258 0.742 20 N -0.362 5.362 21 C -0.364 4.364 22 H 0.090 0.910 23 C -0.209 4.209 24 N -0.580 5.580 25 Si 0.733 3.267 26 H -0.217 1.217 27 H -0.219 1.219 28 H -0.208 1.208 29 H 0.068 0.932 30 H 0.062 0.938 31 H 0.067 0.933 32 H 0.078 0.922 33 H 0.105 0.895 34 H 0.048 0.952 35 H 0.059 0.941 36 H 0.084 0.916 37 H 0.083 0.917 38 H 0.107 0.893 39 H 0.086 0.914 40 H 0.222 0.778 41 H 0.176 0.824 42 H 0.163 0.837 43 H 0.187 0.813 44 H 0.217 0.783 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -17.584 -17.393 -0.314 24.734 hybrid contribution 1.093 0.929 0.579 1.546 sum -16.491 -16.464 0.265 23.304 Atomic orbital electron populations 1.21936 0.97173 1.00541 1.00802 1.21775 0.93235 0.97797 1.00442 1.21829 1.04307 0.94784 0.98844 1.20178 0.86095 0.90893 0.95328 0.93220 1.22147 1.00465 0.98465 0.96436 1.21536 1.01529 0.78503 0.98426 1.46024 1.57725 1.14380 1.19470 1.16945 0.80039 0.82920 0.83384 1.90916 1.39836 1.74069 1.34310 1.20212 1.05402 0.94793 0.91065 1.20769 1.00669 0.89441 0.99009 1.19393 1.07704 0.95537 0.94893 1.20352 0.98559 0.90555 1.00388 1.24858 1.08860 1.04116 0.97907 1.83909 1.59292 0.98286 1.20316 1.23555 1.08973 0.91194 1.00245 1.41413 1.45641 1.07915 1.17924 0.74192 1.42439 0.98854 1.21115 1.73777 1.19182 0.88778 0.96261 1.32135 0.91013 1.24715 0.96504 0.97728 1.01936 1.69647 1.06837 1.29884 1.51601 0.86277 0.79567 0.82241 0.78660 1.21735 1.21914 1.20783 0.93244 0.93807 0.93320 0.92227 0.89450 0.95219 0.94099 0.91556 0.91657 0.89306 0.91426 0.77758 0.82447 0.83695 0.81267 0.78323 0.93572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 39. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.93 8.85 37.16 0.33 -1.60 16 2 C -0.11 -1.83 2.69 -90.62 -0.24 -2.08 16 3 C -0.14 -2.53 8.26 37.16 0.31 -2.22 16 4 C 0.19 3.35 2.02 -67.93 -0.14 3.21 16 5 H 0.05 0.95 8.08 -51.93 -0.42 0.53 16 6 C -0.14 -1.96 4.65 -26.73 -0.12 -2.08 16 7 C 0.12 1.94 5.56 -4.04 -0.02 1.91 16 8 N -0.73 -9.37 5.55 -61.68 -0.34 -9.71 16 9 C 0.58 8.74 7.78 -12.93 -0.10 8.64 16 10 O -0.52 -9.99 16.85 5.17 0.09 -9.90 16 11 C 0.00 -0.02 6.97 -82.47 -0.57 -0.60 16 12 C -0.07 -0.89 10.58 -38.82 -0.41 -1.30 16 13 C -0.16 -1.83 6.80 -105.46 -0.72 -2.54 16 14 C -0.07 -0.59 10.42 -38.55 -0.40 -0.99 16 15 C -0.22 -1.63 11.03 28.84 0.32 -1.31 16 16 S 0.13 1.01 23.24 -107.50 -2.50 -1.49 16 17 C -0.01 -0.11 8.41 -15.05 -0.13 -0.24 16 18 N -0.53 -5.14 6.08 -7.94 -0.05 -5.19 16 19 H 0.42 2.83 8.14 -40.82 -0.33 2.49 16 20 N -0.72 -16.65 4.45 -53.42 -0.24 -16.89 16 21 C -0.23 -6.08 7.57 -15.06 -0.11 -6.19 16 22 H 0.07 1.84 7.40 -52.49 -0.39 1.46 16 23 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 24 N -0.93 -27.60 13.06 55.49 0.72 -26.87 16 25 Si 0.90 22.24 29.55 -169.99 -5.02 17.22 16 26 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 27 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 28 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 29 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.04 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.05 0.56 6.32 -51.93 -0.33 0.23 16 32 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.09 1.88 6.01 -51.93 -0.31 1.57 16 34 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 36 H 0.07 0.78 6.17 -51.93 -0.32 0.46 16 37 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 38 H 0.09 1.77 7.75 -51.93 -0.40 1.37 16 39 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 40 H 0.39 3.63 7.54 -40.82 -0.31 3.32 16 41 H 0.16 1.87 8.06 -52.48 -0.42 1.45 16 42 H 0.15 0.95 8.06 -52.48 -0.42 0.53 16 43 H 0.17 0.76 8.06 -52.49 -0.42 0.34 16 44 H 0.38 9.59 7.80 -40.82 -0.32 9.27 16 45 H 0.25 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 381.90 15.07 5.76 5.76 Total: -1.00 -32.29 381.90 -10.19 -42.48 By element: Atomic # 1 Polarization: 18.94 SS G_CDS: -6.49 Total: 12.45 kcal Atomic # 6 Polarization: -5.73 SS G_CDS: -2.12 Total: -7.84 kcal Atomic # 7 Polarization: -58.77 SS G_CDS: 0.10 Total: -58.67 kcal Atomic # 8 Polarization: -9.99 SS G_CDS: 0.09 Total: -9.90 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.22 kcal Atomic # 16 Polarization: 1.01 SS G_CDS: -2.50 Total: -1.49 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -32.29 -10.19 -42.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725444765.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.996 kcal (2) G-P(sol) polarization free energy of solvation -32.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.481 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.07 seconds