Wall clock time and date at job start Tue Mar 31 2020 18:46:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47164 * 2 1 4 4 C 1.52996 * 109.47178 * 120.00289 * 2 1 3 5 5 H 1.09000 * 109.47521 * 299.99961 * 4 2 1 6 6 C 1.53003 * 109.47332 * 60.00127 * 4 2 1 7 7 C 1.53002 * 109.47269 * 185.00423 * 6 4 2 8 8 N 1.46498 * 109.47272 * 180.02562 * 7 6 4 9 9 C 1.34773 * 120.00043 * 179.97438 * 8 7 6 10 10 O 1.21716 * 120.00280 * 359.97438 * 9 8 7 11 11 C 1.46505 * 119.99859 * 179.97438 * 9 8 7 12 12 C 1.36108 * 125.71128 * 180.02562 * 11 9 8 13 13 C 1.42223 * 107.62749 * 179.97438 * 12 11 9 14 14 C 1.45593 * 140.78099 * 180.02562 * 13 12 11 15 15 C 1.31812 * 114.63455 * 180.02562 * 14 13 12 16 16 S 1.75356 * 111.24306 * 359.96700 * 15 14 13 17 17 C 1.38172 * 106.99404 * 0.02562 * 13 12 11 18 18 N 1.37458 * 108.16862 * 359.75506 * 17 13 12 19 19 H 0.97000 * 125.68217 * 180.28217 * 18 17 13 20 20 N 1.46505 * 109.47130 * 179.97438 * 4 2 1 21 21 C 1.36931 * 119.99788 * 84.99932 * 20 4 2 22 22 H 1.08002 * 120.00438 * 0.02562 * 21 20 4 23 23 C 1.38817 * 119.99680 * 179.72358 * 21 20 4 24 24 N 1.31614 * 119.99888 * 0.27479 * 23 21 20 25 25 Si 1.86803 * 119.99862 * 180.27671 * 23 21 20 26 26 H 1.48498 * 109.47174 * 90.00121 * 25 23 21 27 27 H 1.48501 * 109.47062 * 210.00072 * 25 23 21 28 28 H 1.48504 * 109.46913 * 329.99871 * 25 23 21 29 29 H 1.09000 * 109.46863 * 299.99348 * 1 2 3 30 30 H 1.08994 * 109.47323 * 60.00002 * 1 2 3 31 31 H 1.08998 * 109.47238 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47096 * 239.99921 * 2 1 3 33 33 H 1.09003 * 109.47086 * 180.02562 * 3 2 1 34 34 H 1.08994 * 109.46999 * 300.00196 * 3 2 1 35 35 H 1.09000 * 109.46698 * 60.00552 * 3 2 1 36 36 H 1.09000 * 109.46805 * 304.99883 * 6 4 2 37 37 H 1.08992 * 109.47408 * 64.99820 * 6 4 2 38 38 H 1.09000 * 109.46766 * 299.99484 * 7 6 4 39 39 H 1.08992 * 109.47398 * 59.99391 * 7 6 4 40 40 H 0.97004 * 119.99849 * 359.97438 * 8 7 6 41 41 H 1.08003 * 126.18771 * 359.97380 * 12 11 9 42 42 H 1.08003 * 122.68406 * 359.94190 * 14 13 12 43 43 H 1.07999 * 124.38059 * 179.97438 * 15 14 13 44 44 H 0.97000 * 119.99792 * 264.99726 * 20 4 2 45 45 H 0.97005 * 119.99715 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6767 -0.2076 2.1392 6 6 1.5300 -2.1638 1.2491 7 6 1.9347 -2.8479 2.5565 8 7 1.4470 -4.2293 2.5562 9 6 1.6879 -5.0292 3.6138 10 8 2.3112 -4.6042 4.5689 11 6 1.1997 -6.4105 3.6137 12 6 1.3752 -7.3153 4.6152 13 6 0.7482 -8.5276 4.2153 14 6 0.5042 -9.8817 4.6913 15 6 -0.1768 -10.6427 3.8578 16 16 -0.5916 -9.7696 2.3947 17 6 0.2067 -8.3082 2.9632 18 7 0.4796 -7.0110 2.5994 19 1 0.2124 -6.5883 1.7683 20 7 3.5050 -0.7218 1.2488 21 6 4.1901 0.3528 1.7498 22 1 3.6506 1.2005 2.1454 23 6 5.5783 0.3498 1.7547 24 7 6.2359 -0.6835 1.2730 25 14 6.5130 1.8124 2.4451 26 1 6.7549 1.6054 3.8956 27 1 7.8133 1.9462 1.7406 28 1 5.7137 3.0484 2.2480 29 1 -0.3633 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 3.1300 1.4425 -0.0005 34 1 1.6766 1.9563 -0.8899 35 1 1.6767 1.9562 0.8900 36 1 0.4437 -2.1651 1.1596 37 1 1.9646 -2.7028 0.4074 38 1 3.0210 -2.8466 2.6460 39 1 1.5002 -2.3089 3.3983 40 1 0.9506 -4.5682 1.7948 41 1 1.8964 -7.1437 5.5455 42 1 0.8543 -10.2349 5.6500 43 1 -0.4447 -11.6709 4.0511 44 1 3.9897 -1.4834 0.8938 45 1 7.2059 -0.6854 1.2761 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725444765.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:46:17 Heat of formation + Delta-G solvation = 10.850776 kcal Electronic energy + Delta-G solvation = -25716.249035 eV Core-core repulsion = 22053.018697 eV Total energy + Delta-G solvation = -3663.230338 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.39844 -40.39332 -38.95108 -36.38356 -36.08458 -34.90968 -32.77380 -31.58039 -31.40179 -29.53773 -27.67801 -26.91450 -25.03666 -24.17761 -23.47428 -22.52507 -21.28409 -20.81925 -20.46154 -20.15327 -19.10240 -17.80835 -17.09196 -17.00071 -16.63002 -15.97112 -15.86553 -15.55152 -15.50736 -15.41386 -15.28246 -14.96269 -14.67028 -14.49840 -14.34749 -13.73453 -13.52000 -13.22793 -12.92374 -12.88430 -12.80855 -12.66653 -12.61948 -12.48822 -12.20904 -12.01608 -11.95009 -11.77522 -11.74223 -11.48582 -11.27748 -11.17218 -10.78638 -10.59252 -10.25908 -9.29703 -8.90821 -8.64818 -7.88748 -5.13123 0.07217 0.16554 0.42097 1.06559 1.45613 1.47468 1.54030 1.80125 1.90309 2.11858 2.29057 2.58870 3.44703 3.58586 3.81524 3.87573 3.92089 4.00195 4.13981 4.26318 4.38337 4.43604 4.51558 4.62823 4.66725 4.76422 4.79075 4.79780 4.96212 5.01533 5.11026 5.11536 5.18832 5.22334 5.24019 5.32002 5.37811 5.41981 5.45017 5.58471 5.62157 5.70959 5.80275 6.12835 6.33998 6.40577 7.00959 7.40713 8.17752 8.39081 9.34954 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.015990 B = 0.002296 C = 0.002087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1750.622442 B =12193.999416 C =13411.195519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.105 4.105 3 C -0.139 4.139 4 C 0.178 3.822 5 H 0.041 0.959 6 C -0.120 4.120 7 C 0.133 3.867 8 N -0.707 5.707 9 C 0.582 3.418 10 O -0.570 6.570 11 C -0.016 4.016 12 C -0.086 4.086 13 C -0.183 4.183 14 C -0.089 4.089 15 C -0.212 4.212 16 S 0.165 5.835 17 C -0.020 4.020 18 N -0.513 5.513 19 H 0.434 0.566 20 N -0.730 5.730 21 C -0.210 4.210 22 H 0.075 0.925 23 C -0.080 4.080 24 N -0.970 5.970 25 Si 0.956 3.044 26 H -0.295 1.295 27 H -0.300 1.300 28 H -0.269 1.269 29 H 0.052 0.948 30 H 0.057 0.943 31 H 0.071 0.929 32 H 0.054 0.946 33 H 0.045 0.955 34 H 0.050 0.950 35 H 0.040 0.960 36 H 0.107 0.893 37 H 0.072 0.928 38 H 0.041 0.959 39 H 0.057 0.943 40 H 0.411 0.589 41 H 0.151 0.849 42 H 0.162 0.838 43 H 0.202 0.798 44 H 0.371 0.629 45 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.747 -19.123 -0.934 28.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.126 4.126 3 C -0.196 4.196 4 C 0.069 3.931 5 H 0.059 0.941 6 C -0.159 4.159 7 C 0.010 3.990 8 N -0.359 5.359 9 C 0.369 3.631 10 O -0.449 6.449 11 C -0.129 4.129 12 C -0.114 4.114 13 C -0.196 4.196 14 C -0.119 4.119 15 C -0.345 4.345 16 S 0.418 5.582 17 C -0.249 4.249 18 N -0.118 5.118 19 H 0.275 0.725 20 N -0.370 5.370 21 C -0.342 4.342 22 H 0.093 0.907 23 C -0.272 4.272 24 N -0.623 5.623 25 Si 0.787 3.213 26 H -0.223 1.223 27 H -0.227 1.227 28 H -0.193 1.193 29 H 0.071 0.929 30 H 0.076 0.924 31 H 0.090 0.910 32 H 0.072 0.928 33 H 0.064 0.936 34 H 0.069 0.931 35 H 0.059 0.941 36 H 0.125 0.875 37 H 0.091 0.909 38 H 0.060 0.940 39 H 0.075 0.925 40 H 0.248 0.752 41 H 0.169 0.831 42 H 0.179 0.821 43 H 0.219 0.781 44 H 0.203 0.797 45 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -21.063 -18.858 -1.574 28.315 hybrid contribution 1.990 1.284 0.938 2.547 sum -19.073 -17.574 -0.636 25.943 Atomic orbital electron populations 1.21854 0.93658 1.02420 1.01708 1.21634 0.96055 0.96179 0.98769 1.21767 1.01555 0.96383 0.99906 1.20451 0.83181 0.93565 0.95856 0.94121 1.22018 1.02738 0.95639 0.95471 1.21200 0.98644 0.80060 0.99126 1.45739 1.57192 1.13119 1.19811 1.17263 0.79129 0.83831 0.82834 1.90882 1.42354 1.75318 1.36343 1.19719 1.07134 0.93622 0.92423 1.20916 1.00943 0.90519 0.99021 1.19709 1.07964 0.96255 0.95664 1.20547 0.99865 0.89672 1.01785 1.25326 1.06980 1.05246 0.96973 1.83877 1.58056 0.96227 1.20056 1.24029 1.08713 0.91796 1.00362 1.41246 1.44926 1.07820 1.17815 0.72515 1.42619 1.01157 1.19811 1.73376 1.19476 0.88893 0.96515 1.29323 0.90720 1.25375 0.97699 1.00093 1.04004 1.69790 1.06248 1.31818 1.54396 0.85382 0.78220 0.80358 0.77389 1.22317 1.22695 1.19341 0.92885 0.92425 0.90978 0.92780 0.93580 0.93139 0.94069 0.87462 0.90924 0.94013 0.92489 0.75235 0.83119 0.82072 0.78069 0.79702 0.94546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.08 8.85 71.98 0.64 -2.44 16 2 C -0.11 -3.26 2.69 -10.80 -0.03 -3.29 16 3 C -0.14 -4.84 8.26 71.98 0.59 -4.25 16 4 C 0.18 6.28 2.02 44.99 0.09 6.37 16 5 H 0.04 1.52 8.08 -2.39 -0.02 1.50 16 6 C -0.12 -3.23 4.65 30.60 0.14 -3.09 16 7 C 0.13 4.26 5.56 86.38 0.48 4.74 16 8 N -0.71 -17.98 5.55 -467.26 -2.59 -20.57 16 9 C 0.58 18.01 7.78 86.40 0.67 18.68 16 10 O -0.57 -23.39 16.85 -4.40 -0.07 -23.47 16 11 C -0.02 -0.39 6.97 39.81 0.28 -0.11 16 12 C -0.09 -2.21 10.58 22.76 0.24 -1.96 16 13 C -0.18 -3.97 6.80 -20.41 -0.14 -4.10 16 14 C -0.09 -1.37 10.42 23.39 0.24 -1.13 16 15 C -0.21 -2.40 11.03 67.04 0.74 -1.66 16 16 S 0.16 2.08 23.24 -56.49 -1.31 0.77 16 17 C -0.02 -0.37 8.41 83.80 0.70 0.33 16 18 N -0.51 -9.35 6.08 -179.04 -1.09 -10.44 16 19 H 0.43 4.90 8.14 -92.71 -0.75 4.15 16 20 N -0.73 -34.47 4.45 -322.93 -1.44 -35.91 16 21 C -0.21 -11.22 7.57 84.04 0.64 -10.58 16 22 H 0.07 3.88 7.40 -2.91 -0.02 3.86 16 23 C -0.08 -4.60 5.50 84.86 0.47 -4.13 16 24 N -0.97 -59.86 13.06 21.65 0.28 -59.58 16 25 Si 0.96 47.10 29.55 68.60 2.03 49.13 16 26 H -0.30 -14.65 7.11 99.48 0.71 -13.94 16 27 H -0.30 -15.01 7.11 99.48 0.71 -14.30 16 28 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 29 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 30 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.07 1.28 6.32 -2.39 -0.02 1.26 16 32 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 33 H 0.05 1.98 6.01 -2.39 -0.01 1.97 16 34 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 35 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 36 H 0.11 2.07 6.17 -2.39 -0.01 2.05 16 37 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 38 H 0.04 1.75 7.75 -2.39 -0.02 1.73 16 39 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 40 H 0.41 6.83 7.54 -92.71 -0.70 6.13 16 41 H 0.15 3.89 8.06 -2.91 -0.02 3.87 16 42 H 0.16 1.84 8.06 -2.91 -0.02 1.81 16 43 H 0.20 0.92 8.06 -2.91 -0.02 0.90 16 44 H 0.37 19.23 7.80 -92.71 -0.72 18.50 16 45 H 0.25 14.95 8.31 -92.70 -0.77 14.18 16 Total: -1.00 -74.49 381.90 0.42 -74.07 By element: Atomic # 1 Polarization: 33.79 SS G_CDS: -1.14 Total: 32.65 kcal Atomic # 6 Polarization: -12.41 SS G_CDS: 5.76 Total: -6.65 kcal Atomic # 7 Polarization: -121.67 SS G_CDS: -4.84 Total: -126.51 kcal Atomic # 8 Polarization: -23.39 SS G_CDS: -0.07 Total: -23.47 kcal Atomic # 14 Polarization: 47.10 SS G_CDS: 2.03 Total: 49.13 kcal Atomic # 16 Polarization: 2.08 SS G_CDS: -1.31 Total: 0.77 kcal Total: -74.49 0.42 -74.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725444765.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.920 kcal (2) G-P(sol) polarization free energy of solvation -74.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.069 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds