Wall clock time and date at job start Tue Mar 31 2020 19:09:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.53002 * 109.46795 * 2 1 4 4 C 1.52995 * 109.47210 * 120.00060 * 2 1 3 5 5 O 1.42905 * 109.47052 * 65.00076 * 4 2 1 6 6 C 1.35407 * 116.99861 * 179.97438 * 5 4 2 7 7 N 1.32233 * 119.80803 * 0.02562 * 6 5 4 8 8 C 1.31882 * 121.80925 * 179.97438 * 7 6 5 9 9 C 1.38368 * 121.19749 * 0.02562 * 8 7 6 10 10 C 1.38310 * 119.46641 * 0.02562 * 9 8 7 11 11 C 1.40054 * 118.34399 * 0.24600 * 10 9 8 12 12 C 1.47390 * 120.60054 * 179.74966 * 11 10 9 13 13 O 1.21516 * 119.99679 * 178.16789 * 12 11 10 14 14 O 1.34746 * 120.00469 * 358.17365 * 12 11 10 15 15 C 1.45200 * 117.00455 * 183.29167 * 14 12 11 16 16 C 1.52992 * 109.47400 * 183.10246 * 15 14 12 17 17 C 1.50703 * 112.99789 * 290.31174 * 16 15 14 18 18 H 1.07997 * 120.00322 * 116.53947 * 17 16 15 19 19 C 1.37881 * 119.99787 * 296.53520 * 17 16 15 20 20 N 1.31513 * 120.00039 * 353.84682 * 19 17 16 21 21 Si 1.86799 * 119.99778 * 173.84807 * 19 17 16 22 22 H 1.48502 * 109.47487 * 89.99851 * 21 19 17 23 23 H 1.48499 * 109.46837 * 210.00053 * 21 19 17 24 24 H 1.48498 * 109.47140 * 330.00036 * 21 19 17 25 25 C 1.54035 * 113.81875 * 158.32305 * 16 15 14 26 26 O 1.44177 * 85.52051 * 223.19277 * 25 16 15 27 27 C 1.44177 * 93.33697 * 24.19369 * 26 25 16 28 28 H 1.08991 * 109.47039 * 59.99955 * 1 2 3 29 29 H 1.09003 * 109.46710 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.46852 * 299.99507 * 1 2 3 31 31 H 1.08998 * 109.46852 * 240.00492 * 2 1 3 32 32 H 1.08996 * 109.46735 * 179.97438 * 3 2 1 33 33 H 1.08998 * 109.46928 * 300.00349 * 3 2 1 34 34 H 1.09006 * 109.46846 * 60.00280 * 3 2 1 35 35 H 1.09000 * 109.47357 * 305.00496 * 4 2 1 36 36 H 1.08990 * 109.47330 * 184.99998 * 4 2 1 37 37 H 1.08005 * 119.39925 * 180.02562 * 8 7 6 38 38 H 1.08003 * 120.26834 * 180.02562 * 9 8 7 39 39 H 1.08002 * 120.82752 * 179.97438 * 10 9 8 40 40 H 1.09007 * 109.46724 * 303.10291 * 15 14 12 41 41 H 1.08998 * 109.46912 * 63.10058 * 15 14 12 42 42 H 0.97003 * 120.00002 * 185.03842 * 20 19 17 43 43 H 1.08996 * 113.86413 * 337.34528 * 25 16 15 44 44 H 1.09003 * 113.86256 * 109.04489 * 25 16 15 45 45 H 1.09008 * 113.86516 * 221.65561 * 27 26 25 46 46 H 1.09000 * 113.98380 * 89.96875 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2492 5 8 1.6621 -2.0982 1.1919 6 6 2.0393 -2.8829 2.2290 7 7 2.7256 -2.3617 3.2320 8 6 3.1125 -3.0891 4.2617 9 6 2.8159 -4.4385 4.3378 10 6 2.1012 -5.0367 3.3160 11 6 1.7056 -4.2460 2.2298 12 6 0.9468 -4.8334 1.1111 13 8 0.5804 -4.1305 0.1901 14 8 0.6594 -6.1499 1.1095 15 6 -0.0265 -6.6736 -0.0582 16 6 -0.3344 -8.1571 0.1537 17 6 0.8993 -9.0226 0.1379 18 1 1.1864 -9.5699 1.0235 19 6 1.6613 -9.1158 -1.0074 20 7 1.2486 -8.5485 -2.1198 21 14 3.2799 -10.0478 -0.9790 22 1 3.0373 -11.4720 -1.3226 23 1 4.2119 -9.4515 -1.9695 24 1 3.8774 -9.9609 0.3777 25 6 -1.4805 -8.6868 -0.7285 26 8 -1.9316 -9.3649 0.4612 27 6 -1.2730 -8.4339 1.3433 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 3.1300 1.4425 0.0005 33 1 1.6766 1.9563 -0.8899 34 1 1.6767 1.9563 0.8901 35 1 1.6054 -0.2618 2.1369 36 1 3.1263 -0.6443 1.2951 37 1 3.6711 -2.6231 5.0600 38 1 3.1400 -5.0199 5.1884 39 1 1.8580 -6.0883 3.3526 40 1 -0.9576 -6.1270 -0.2082 41 1 0.6092 -6.5562 -0.9359 42 1 1.7467 -8.6750 -2.9425 43 1 -2.1615 -7.9114 -1.0792 44 1 -1.1522 -9.3588 -1.5215 45 1 -0.7801 -8.9052 2.1937 46 1 -1.8891 -7.5805 1.6267 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001772367293.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:09:53 Heat of formation + Delta-G solvation = -105.756953 kcal Electronic energy + Delta-G solvation = -29483.007183 eV Core-core repulsion = 25339.674733 eV Total energy + Delta-G solvation = -4143.332451 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.88774 -39.57087 -38.82697 -38.27595 -35.65823 -35.26173 -33.02931 -32.70729 -30.77066 -29.84418 -27.27391 -26.75264 -25.68818 -25.36377 -24.77531 -23.82702 -22.93127 -20.87670 -20.22438 -19.01749 -18.50991 -17.34048 -17.08554 -16.47637 -16.28475 -15.80436 -15.45221 -15.14951 -14.96888 -14.72046 -14.46689 -14.34178 -14.29974 -14.14326 -13.60877 -13.36361 -13.06211 -12.80343 -12.61856 -12.51800 -12.31296 -12.03867 -11.93795 -11.63581 -11.49844 -11.19243 -10.99187 -10.84592 -10.80943 -10.71934 -10.45866 -10.18345 -10.02409 -9.98210 -9.87983 -9.51662 -9.33242 -9.07386 -8.73441 -8.60171 -8.33981 -6.18437 -4.23479 0.61772 1.19600 2.89495 2.95874 3.24275 3.28983 3.31817 3.34663 3.82041 4.15089 4.31301 4.62871 4.71508 4.77893 4.79417 4.88655 4.91136 5.05273 5.15386 5.20443 5.30877 5.39789 5.44521 5.49865 5.55021 5.71346 5.79342 5.83336 5.92222 5.97475 6.07593 6.09575 6.14135 6.17903 6.28457 6.31922 6.32800 6.39792 6.59108 6.95994 7.15276 7.20184 7.28501 7.33755 7.38545 7.64217 7.77217 8.17461 8.47337 8.74112 9.40571 10.88481 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.011661 B = 0.003374 C = 0.003196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2400.666915 B = 8297.282779 C = 8757.593223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.097 4.097 3 C -0.143 4.143 4 C 0.071 3.929 5 O -0.267 6.267 6 C 0.374 3.626 7 N -0.550 5.550 8 C 0.165 3.835 9 C -0.227 4.227 10 C 0.017 3.983 11 C -0.190 4.190 12 C 0.501 3.499 13 O -0.496 6.496 14 O -0.338 6.338 15 C 0.084 3.916 16 C 0.035 3.965 17 C -0.491 4.491 18 H 0.067 0.933 19 C 0.066 3.934 20 N -0.888 5.888 21 Si 0.898 3.102 22 H -0.279 1.279 23 H -0.286 1.286 24 H -0.271 1.271 25 C 0.050 3.950 26 O -0.389 6.389 27 C 0.031 3.969 28 H 0.055 0.945 29 H 0.069 0.931 30 H 0.050 0.950 31 H 0.082 0.918 32 H 0.056 0.944 33 H 0.063 0.937 34 H 0.056 0.944 35 H 0.066 0.934 36 H 0.065 0.935 37 H 0.163 0.837 38 H 0.145 0.855 39 H 0.161 0.839 40 H 0.038 0.962 41 H 0.091 0.909 42 H 0.266 0.734 43 H 0.048 0.952 44 H 0.097 0.903 45 H 0.077 0.923 46 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.978 15.198 10.071 18.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.116 4.116 3 C -0.200 4.200 4 C -0.005 4.005 5 O -0.172 6.172 6 C 0.195 3.805 7 N -0.275 5.275 8 C 0.008 3.992 9 C -0.248 4.248 10 C -0.008 4.008 11 C -0.194 4.194 12 C 0.344 3.656 13 O -0.386 6.386 14 O -0.253 6.253 15 C 0.010 3.990 16 C 0.034 3.966 17 C -0.528 4.528 18 H 0.085 0.915 19 C -0.136 4.136 20 N -0.525 5.525 21 Si 0.725 3.275 22 H -0.205 1.205 23 H -0.211 1.211 24 H -0.196 1.196 25 C -0.027 4.027 26 O -0.308 6.308 27 C -0.046 4.046 28 H 0.074 0.926 29 H 0.088 0.912 30 H 0.069 0.931 31 H 0.101 0.899 32 H 0.075 0.925 33 H 0.082 0.918 34 H 0.075 0.925 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.180 0.820 38 H 0.162 0.838 39 H 0.178 0.822 40 H 0.057 0.943 41 H 0.109 0.891 42 H 0.076 0.924 43 H 0.066 0.934 44 H 0.115 0.885 45 H 0.096 0.904 46 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 2.809 16.063 9.316 18.781 hybrid contribution 0.885 -0.986 -0.108 1.330 sum 3.694 15.077 9.208 18.049 Atomic orbital electron populations 1.21825 0.94262 1.03136 1.01275 1.21155 0.97176 0.95586 0.97640 1.21760 1.01080 0.94886 1.02285 1.22816 0.99985 0.78765 0.98912 1.86513 1.71335 1.21438 1.37891 1.19801 0.87526 0.87375 0.85837 1.67508 1.16734 1.39878 1.03386 1.22658 0.92387 0.90864 0.93273 1.21984 1.04625 0.96482 1.01691 1.21965 0.88769 1.00825 0.89233 1.19359 1.09658 0.91784 0.98624 1.20548 0.77903 0.82044 0.85101 1.90836 1.49789 1.62036 1.35893 1.86500 1.70368 1.22518 1.45954 1.23551 0.94519 0.95239 0.85682 1.21084 0.94754 0.90172 0.90597 1.20621 1.06227 1.27255 0.98696 0.91527 1.24981 0.97991 0.95234 0.95438 1.69855 1.40033 1.43187 0.99440 0.86480 0.83213 0.79694 0.78093 1.20490 1.21130 1.19612 1.23920 0.93140 0.95501 0.90125 1.89489 1.75854 1.47326 1.18140 1.23993 0.93264 0.91468 0.95843 0.92601 0.91214 0.93052 0.89914 0.92456 0.91802 0.92457 0.91601 0.91648 0.81962 0.83767 0.82190 0.94337 0.89124 0.92432 0.93411 0.88470 0.90425 0.92841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.68 9.09 37.16 0.34 -1.34 16 2 C -0.10 -1.08 3.16 -90.62 -0.29 -1.36 16 3 C -0.14 -1.17 9.19 37.16 0.34 -0.83 16 4 C 0.07 0.88 4.69 37.16 0.17 1.06 16 5 O -0.27 -4.41 7.75 -39.68 -0.31 -4.72 16 6 C 0.37 5.98 7.51 -16.59 -0.12 5.86 16 7 N -0.55 -7.37 9.21 -12.97 -0.12 -7.49 16 8 C 0.16 1.69 11.17 -17.48 -0.20 1.49 16 9 C -0.23 -2.32 10.09 -39.51 -0.40 -2.72 16 10 C 0.02 0.23 9.73 -38.87 -0.38 -0.15 16 11 C -0.19 -3.20 5.90 -104.70 -0.62 -3.82 16 12 C 0.50 10.28 7.89 34.46 0.27 10.55 16 13 O -0.50 -11.26 14.93 -26.57 -0.40 -11.66 16 14 O -0.34 -7.31 9.35 -40.62 -0.38 -7.69 16 15 C 0.08 1.96 4.77 37.15 0.18 2.14 16 16 C 0.03 0.83 0.56 -154.58 -0.09 0.74 16 17 C -0.49 -12.81 8.26 -34.44 -0.28 -13.10 16 18 H 0.07 1.73 7.81 -52.49 -0.41 1.32 16 19 C 0.07 1.74 5.21 -17.82 -0.09 1.65 16 20 N -0.89 -23.96 11.26 55.43 0.62 -23.33 16 21 Si 0.90 20.63 29.55 -169.99 -5.02 15.61 16 22 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 23 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 24 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 25 C 0.05 1.18 7.94 37.61 0.30 1.48 16 26 O -0.39 -9.21 12.40 -35.23 -0.44 -9.65 16 27 C 0.03 0.67 8.21 37.61 0.31 0.98 16 28 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.07 0.99 7.82 -51.93 -0.41 0.58 16 30 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 33 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 35 H 0.07 0.77 8.10 -51.93 -0.42 0.35 16 36 H 0.07 0.78 8.10 -51.93 -0.42 0.35 16 37 H 0.16 1.03 8.06 -52.48 -0.42 0.61 16 38 H 0.14 1.00 8.06 -52.48 -0.42 0.58 16 39 H 0.16 2.05 7.70 -52.49 -0.40 1.65 16 40 H 0.04 0.86 7.88 -51.92 -0.41 0.45 16 41 H 0.09 2.39 6.77 -51.93 -0.35 2.04 16 42 H 0.27 6.91 8.32 -40.82 -0.34 6.57 16 43 H 0.05 1.03 7.99 -51.93 -0.41 0.62 16 44 H 0.10 2.45 7.58 -51.93 -0.39 2.05 16 45 H 0.08 1.58 8.08 -51.92 -0.42 1.17 16 46 H 0.05 1.04 8.10 -51.93 -0.42 0.62 16 LS Contribution 388.35 15.07 5.85 5.85 Total: -1.00 -30.75 388.35 -7.73 -38.48 By element: Atomic # 1 Polarization: 8.93 SS G_CDS: -6.99 Total: 1.95 kcal Atomic # 6 Polarization: 3.19 SS G_CDS: -0.55 Total: 2.64 kcal Atomic # 7 Polarization: -31.32 SS G_CDS: 0.50 Total: -30.82 kcal Atomic # 8 Polarization: -32.19 SS G_CDS: -1.52 Total: -33.71 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -30.75 -7.73 -38.48 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001772367293.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.275 kcal (2) G-P(sol) polarization free energy of solvation -30.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds