Wall clock time and date at job start Tue Mar 31 2020 19:09:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.53002 * 109.46795 * 2 1 4 4 C 1.52995 * 109.47210 * 120.00060 * 2 1 3 5 5 O 1.42905 * 109.47052 * 65.00076 * 4 2 1 6 6 C 1.35407 * 116.99861 * 179.97438 * 5 4 2 7 7 N 1.32233 * 119.80803 * 0.02562 * 6 5 4 8 8 C 1.31882 * 121.80925 * 179.97438 * 7 6 5 9 9 C 1.38368 * 121.19749 * 0.02562 * 8 7 6 10 10 C 1.38310 * 119.46641 * 0.02562 * 9 8 7 11 11 C 1.40054 * 118.34399 * 0.24600 * 10 9 8 12 12 C 1.47390 * 120.60054 * 179.74966 * 11 10 9 13 13 O 1.21516 * 119.99679 * 178.16789 * 12 11 10 14 14 O 1.34746 * 120.00469 * 358.17365 * 12 11 10 15 15 C 1.45200 * 117.00455 * 183.29167 * 14 12 11 16 16 C 1.52992 * 109.47400 * 183.10246 * 15 14 12 17 17 C 1.50703 * 112.99789 * 290.31174 * 16 15 14 18 18 H 1.07997 * 120.00322 * 116.53947 * 17 16 15 19 19 C 1.37881 * 119.99787 * 296.53520 * 17 16 15 20 20 N 1.31513 * 120.00039 * 353.84682 * 19 17 16 21 21 Si 1.86799 * 119.99778 * 173.84807 * 19 17 16 22 22 H 1.48502 * 109.47487 * 89.99851 * 21 19 17 23 23 H 1.48499 * 109.46837 * 210.00053 * 21 19 17 24 24 H 1.48498 * 109.47140 * 330.00036 * 21 19 17 25 25 C 1.54035 * 113.81875 * 158.32305 * 16 15 14 26 26 O 1.44177 * 85.52051 * 223.19277 * 25 16 15 27 27 C 1.44177 * 93.33697 * 24.19369 * 26 25 16 28 28 H 1.08991 * 109.47039 * 59.99955 * 1 2 3 29 29 H 1.09003 * 109.46710 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.46852 * 299.99507 * 1 2 3 31 31 H 1.08998 * 109.46852 * 240.00492 * 2 1 3 32 32 H 1.08996 * 109.46735 * 179.97438 * 3 2 1 33 33 H 1.08998 * 109.46928 * 300.00349 * 3 2 1 34 34 H 1.09006 * 109.46846 * 60.00280 * 3 2 1 35 35 H 1.09000 * 109.47357 * 305.00496 * 4 2 1 36 36 H 1.08990 * 109.47330 * 184.99998 * 4 2 1 37 37 H 1.08005 * 119.39925 * 180.02562 * 8 7 6 38 38 H 1.08003 * 120.26834 * 180.02562 * 9 8 7 39 39 H 1.08002 * 120.82752 * 179.97438 * 10 9 8 40 40 H 1.09007 * 109.46724 * 303.10291 * 15 14 12 41 41 H 1.08998 * 109.46912 * 63.10058 * 15 14 12 42 42 H 0.97003 * 120.00002 * 185.03842 * 20 19 17 43 43 H 1.08996 * 113.86413 * 337.34528 * 25 16 15 44 44 H 1.09003 * 113.86256 * 109.04489 * 25 16 15 45 45 H 1.09008 * 113.86516 * 221.65561 * 27 26 25 46 46 H 1.09000 * 113.98380 * 89.96875 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2492 5 8 1.6621 -2.0982 1.1919 6 6 2.0393 -2.8829 2.2290 7 7 2.7256 -2.3617 3.2320 8 6 3.1125 -3.0891 4.2617 9 6 2.8159 -4.4385 4.3378 10 6 2.1012 -5.0367 3.3160 11 6 1.7056 -4.2460 2.2298 12 6 0.9468 -4.8334 1.1111 13 8 0.5804 -4.1305 0.1901 14 8 0.6594 -6.1499 1.1095 15 6 -0.0265 -6.6736 -0.0582 16 6 -0.3344 -8.1571 0.1537 17 6 0.8993 -9.0226 0.1379 18 1 1.1864 -9.5699 1.0235 19 6 1.6613 -9.1158 -1.0074 20 7 1.2486 -8.5485 -2.1198 21 14 3.2799 -10.0478 -0.9790 22 1 3.0373 -11.4720 -1.3226 23 1 4.2119 -9.4515 -1.9695 24 1 3.8774 -9.9609 0.3777 25 6 -1.4805 -8.6868 -0.7285 26 8 -1.9316 -9.3649 0.4612 27 6 -1.2730 -8.4339 1.3433 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 3.1300 1.4425 0.0005 33 1 1.6766 1.9563 -0.8899 34 1 1.6767 1.9563 0.8901 35 1 1.6054 -0.2618 2.1369 36 1 3.1263 -0.6443 1.2951 37 1 3.6711 -2.6231 5.0600 38 1 3.1400 -5.0199 5.1884 39 1 1.8580 -6.0883 3.3526 40 1 -0.9576 -6.1270 -0.2082 41 1 0.6092 -6.5562 -0.9359 42 1 1.7467 -8.6750 -2.9425 43 1 -2.1615 -7.9114 -1.0792 44 1 -1.1522 -9.3588 -1.5215 45 1 -0.7801 -8.9052 2.1937 46 1 -1.8891 -7.5805 1.6267 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001772367293.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:09:52 Heat of formation + Delta-G solvation = -124.482190 kcal Electronic energy + Delta-G solvation = -29483.819171 eV Core-core repulsion = 25339.674733 eV Total energy + Delta-G solvation = -4144.144438 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.05349 -41.27986 -40.47746 -39.31332 -37.28199 -36.25002 -34.94267 -33.86342 -31.95070 -31.55887 -28.09859 -27.76070 -27.40628 -27.15389 -26.44786 -25.29264 -23.99072 -22.25696 -21.19172 -20.90888 -19.58237 -18.77332 -18.52750 -17.99234 -17.54312 -17.38278 -17.05467 -16.72705 -16.30988 -16.20069 -16.03134 -15.82619 -15.75526 -15.24443 -14.73729 -14.50106 -14.37830 -14.00237 -13.88958 -13.78901 -13.61461 -13.51881 -13.24079 -13.04377 -12.83574 -12.66089 -12.37108 -12.34246 -12.10059 -11.88571 -11.78354 -11.73552 -11.62878 -11.43592 -11.24598 -11.08240 -10.96067 -10.77522 -10.67712 -10.23745 -9.64084 -8.18664 -6.29404 -0.47782 0.20261 1.41166 1.43273 1.52178 1.54142 1.74740 1.91008 2.39477 2.71838 2.99008 3.20110 3.20874 3.63428 3.70302 3.81168 3.87485 3.94421 4.05633 4.15357 4.24900 4.27354 4.41312 4.45843 4.45930 4.49607 4.53181 4.60116 4.61824 4.75015 4.76792 4.90421 4.94118 4.96214 5.08384 5.15306 5.15782 5.20882 5.29718 5.35288 5.43971 5.45994 5.51061 5.62396 5.72725 6.18032 6.21655 6.64839 6.70953 6.84349 7.37067 8.87168 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.011661 B = 0.003374 C = 0.003196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2400.666915 B = 8297.282779 C = 8757.593223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.098 4.098 3 C -0.135 4.135 4 C 0.069 3.931 5 O -0.298 6.298 6 C 0.361 3.639 7 N -0.555 5.555 8 C 0.177 3.823 9 C -0.208 4.208 10 C 0.013 3.987 11 C -0.227 4.227 12 C 0.497 3.503 13 O -0.531 6.531 14 O -0.339 6.339 15 C 0.097 3.903 16 C 0.021 3.979 17 C -0.505 4.505 18 H 0.064 0.936 19 C 0.023 3.977 20 N -0.911 5.911 21 Si 0.953 3.047 22 H -0.274 1.274 23 H -0.289 1.289 24 H -0.263 1.263 25 C 0.053 3.947 26 O -0.401 6.401 27 C 0.042 3.958 28 H 0.068 0.932 29 H 0.032 0.968 30 H 0.064 0.936 31 H 0.062 0.938 32 H 0.064 0.936 33 H 0.073 0.927 34 H 0.069 0.931 35 H 0.075 0.925 36 H 0.070 0.930 37 H 0.214 0.786 38 H 0.189 0.811 39 H 0.162 0.838 40 H 0.041 0.959 41 H 0.054 0.946 42 H 0.264 0.736 43 H 0.066 0.934 44 H 0.075 0.925 45 H 0.090 0.910 46 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.490 16.254 13.141 21.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.116 4.116 3 C -0.192 4.192 4 C -0.005 4.005 5 O -0.203 6.203 6 C 0.182 3.818 7 N -0.280 5.280 8 C 0.021 3.979 9 C -0.227 4.227 10 C -0.012 4.012 11 C -0.231 4.231 12 C 0.342 3.658 13 O -0.423 6.423 14 O -0.255 6.255 15 C 0.023 3.977 16 C 0.020 3.980 17 C -0.542 4.542 18 H 0.082 0.918 19 C -0.178 4.178 20 N -0.549 5.549 21 Si 0.779 3.221 22 H -0.200 1.200 23 H -0.215 1.215 24 H -0.187 1.187 25 C -0.024 4.024 26 O -0.321 6.321 27 C -0.034 4.034 28 H 0.087 0.913 29 H 0.051 0.949 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.083 0.917 33 H 0.092 0.908 34 H 0.088 0.912 35 H 0.093 0.907 36 H 0.089 0.911 37 H 0.230 0.770 38 H 0.206 0.794 39 H 0.179 0.821 40 H 0.060 0.940 41 H 0.072 0.928 42 H 0.073 0.927 43 H 0.084 0.916 44 H 0.093 0.907 45 H 0.108 0.892 46 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 4.319 17.118 12.408 21.579 hybrid contribution 0.460 -1.248 -0.938 1.628 sum 4.779 15.870 11.469 20.155 Atomic orbital electron populations 1.21780 0.94686 1.01060 1.02582 1.21207 0.96847 0.97258 0.96314 1.21716 1.01529 0.92579 1.03379 1.23009 1.00355 0.77365 0.99801 1.86487 1.71884 1.23118 1.38834 1.19921 0.88213 0.87103 0.86539 1.67645 1.16588 1.40199 1.03565 1.23604 0.90466 0.91031 0.92809 1.22440 1.02195 0.96700 1.01394 1.22136 0.89145 1.00800 0.89167 1.19308 1.12059 0.92820 0.98961 1.21317 0.77411 0.81183 0.85874 1.90806 1.51457 1.62408 1.37604 1.86496 1.70495 1.23611 1.44894 1.23169 0.93915 0.95407 0.85211 1.21143 0.94673 0.89854 0.92298 1.20882 1.07249 1.27483 0.98602 0.91752 1.25667 1.00702 0.96168 0.95214 1.69969 1.41021 1.44177 0.99782 0.85609 0.79706 0.78585 0.78236 1.20003 1.21457 1.18669 1.23839 0.93550 0.95311 0.89697 1.89460 1.76020 1.48146 1.18429 1.24081 0.92506 0.91743 0.95118 0.91338 0.94889 0.91667 0.91903 0.91698 0.90829 0.91212 0.90708 0.91149 0.77003 0.79414 0.82061 0.94028 0.92754 0.92661 0.91618 0.90680 0.89202 0.90527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.36 9.09 71.99 0.65 -2.71 16 2 C -0.10 -2.19 3.16 -10.79 -0.03 -2.22 16 3 C -0.13 -2.01 9.19 71.98 0.66 -1.35 16 4 C 0.07 1.74 4.69 71.98 0.34 2.07 16 5 O -0.30 -10.24 7.75 -66.20 -0.51 -10.75 16 6 C 0.36 11.56 7.51 85.14 0.64 12.19 16 7 N -0.55 -13.64 9.21 -307.97 -2.84 -16.48 16 8 C 0.18 2.86 11.17 84.72 0.95 3.81 16 9 C -0.21 -3.36 10.09 22.32 0.23 -3.14 16 10 C 0.01 0.32 9.73 22.73 0.22 0.54 16 11 C -0.23 -7.74 5.90 -19.92 -0.12 -7.86 16 12 C 0.50 21.33 7.89 70.23 0.55 21.88 16 13 O -0.53 -25.76 14.93 26.76 0.40 -25.36 16 14 O -0.34 -15.14 9.35 -56.57 -0.53 -15.67 16 15 C 0.10 4.73 4.77 71.98 0.34 5.07 16 16 C 0.02 1.02 0.56 -52.23 -0.03 0.99 16 17 C -0.50 -26.65 8.26 25.60 0.21 -26.44 16 18 H 0.06 3.34 7.81 -2.91 -0.02 3.32 16 19 C 0.02 1.21 5.21 84.66 0.44 1.65 16 20 N -0.91 -50.72 11.26 21.45 0.24 -50.48 16 21 Si 0.95 42.61 29.55 68.60 2.03 44.64 16 22 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 23 H -0.29 -12.95 7.11 99.48 0.71 -12.24 16 24 H -0.26 -11.25 7.11 99.48 0.71 -10.55 16 25 C 0.05 2.54 7.94 72.27 0.57 3.11 16 26 O -0.40 -18.83 12.40 -148.98 -1.85 -20.68 16 27 C 0.04 1.77 8.21 72.27 0.59 2.36 16 28 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 29 H 0.03 1.00 7.82 -2.39 -0.02 0.98 16 30 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 31 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 32 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 34 H 0.07 0.88 8.14 -2.38 -0.02 0.86 16 35 H 0.07 1.69 8.10 -2.39 -0.02 1.67 16 36 H 0.07 1.64 8.10 -2.39 -0.02 1.62 16 37 H 0.21 1.30 8.06 -2.91 -0.02 1.28 16 38 H 0.19 1.44 8.06 -2.91 -0.02 1.42 16 39 H 0.16 3.94 7.70 -2.91 -0.02 3.92 16 40 H 0.04 1.95 7.88 -2.38 -0.02 1.93 16 41 H 0.05 3.03 6.77 -2.39 -0.02 3.01 16 42 H 0.26 14.17 8.32 -92.71 -0.77 13.40 16 43 H 0.07 2.87 7.99 -2.39 -0.02 2.85 16 44 H 0.07 3.90 7.58 -2.39 -0.02 3.88 16 45 H 0.09 3.54 8.08 -2.38 -0.02 3.52 16 46 H 0.08 2.87 8.10 -2.39 -0.02 2.85 16 Total: -1.00 -70.45 388.35 4.14 -66.31 By element: Atomic # 1 Polarization: 17.53 SS G_CDS: 0.97 Total: 18.50 kcal Atomic # 6 Polarization: 3.75 SS G_CDS: 6.22 Total: 9.97 kcal Atomic # 7 Polarization: -64.36 SS G_CDS: -2.59 Total: -66.96 kcal Atomic # 8 Polarization: -69.97 SS G_CDS: -2.49 Total: -72.46 kcal Atomic # 14 Polarization: 42.61 SS G_CDS: 2.03 Total: 44.64 kcal Total: -70.45 4.14 -66.31 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001772367293.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.172 kcal (2) G-P(sol) polarization free energy of solvation -70.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.310 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds