Wall clock time and date at job start Tue Mar 31 2020 19:13:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.47293 * 2 1 4 4 O 1.42905 * 109.46996 * 119.99600 * 2 1 3 5 5 C 1.42899 * 113.99778 * 90.00183 * 4 2 1 6 6 C 1.50699 * 109.46785 * 179.97438 * 5 4 2 7 7 C 1.38369 * 119.84874 * 269.72230 * 6 5 4 8 8 C 1.37946 * 120.14869 * 179.72668 * 7 6 5 9 9 C 1.39620 * 119.84877 * 0.56938 * 8 7 6 10 10 C 1.47727 * 120.15031 * 179.68199 * 9 8 7 11 11 O 1.21474 * 120.00114 * 180.02562 * 10 9 8 12 12 O 1.34704 * 120.00035 * 0.02562 * 10 9 8 13 13 C 1.45205 * 117.00116 * 179.97438 * 12 10 9 14 14 C 1.50700 * 109.47218 * 180.02562 * 13 12 10 15 15 O 1.21283 * 120.00200 * 0.02562 * 14 13 12 16 16 N 1.34775 * 120.00206 * 180.02562 * 14 13 12 17 17 C 1.46501 * 120.00185 * 180.02562 * 16 14 13 18 18 C 1.50698 * 109.46874 * 179.97438 * 17 16 14 19 19 H 1.07993 * 120.00439 * 0.02562 * 18 17 16 20 20 C 1.37877 * 119.99648 * 179.97438 * 18 17 16 21 21 N 1.31516 * 120.00495 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 120.00119 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.47029 * 0.02562 * 22 20 18 24 24 H 1.48501 * 109.47262 * 119.99963 * 22 20 18 25 25 H 1.48497 * 109.47631 * 240.00151 * 22 20 18 26 26 C 1.39630 * 119.70349 * 359.70863 * 9 8 7 27 27 C 1.37945 * 119.84276 * 359.97438 * 26 9 8 28 28 H 1.09008 * 109.47142 * 299.99897 * 1 2 3 29 29 H 1.08992 * 109.47123 * 59.99863 * 1 2 3 30 30 H 1.09000 * 109.47214 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46955 * 239.99484 * 2 1 3 32 32 H 1.08999 * 109.47130 * 180.02562 * 3 2 1 33 33 H 1.09002 * 109.46694 * 299.99854 * 3 2 1 34 34 H 1.08996 * 109.46889 * 59.99514 * 3 2 1 35 35 H 1.08997 * 109.47171 * 299.99768 * 5 4 2 36 36 H 1.08997 * 109.47442 * 59.99964 * 5 4 2 37 37 H 1.07997 * 119.92371 * 359.97438 * 7 6 5 38 38 H 1.08004 * 120.07165 * 180.28019 * 8 7 6 39 39 H 1.08993 * 109.47149 * 299.99988 * 13 12 10 40 40 H 1.08995 * 109.46881 * 60.00246 * 13 12 10 41 41 H 0.97003 * 119.99892 * 0.02562 * 16 14 13 42 42 H 1.08993 * 109.46806 * 299.99625 * 17 16 14 43 43 H 1.08995 * 109.47260 * 59.99904 * 17 16 14 44 44 H 0.96994 * 120.00160 * 179.97438 * 21 20 18 45 45 H 1.07998 * 120.08088 * 179.97438 * 26 9 8 46 46 H 1.08009 * 119.92243 * 180.02562 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 2.0063 -0.6736 1.1669 5 6 2.2001 -2.0781 0.9888 6 6 2.7014 -2.6830 2.2747 7 6 4.0620 -2.7647 2.5130 8 6 4.5276 -3.3121 3.6905 9 6 3.6228 -3.7952 4.6377 10 6 4.1142 -4.3891 5.8979 11 8 3.3246 -4.8091 6.7199 12 8 5.4380 -4.4651 6.1354 13 6 5.8488 -5.0602 7.3945 14 6 7.3531 -5.0587 7.4838 15 8 8.0140 -4.6007 6.5759 16 7 7.9641 -5.5663 8.5726 17 6 9.4266 -5.5643 8.6596 18 6 9.8528 -6.1821 9.9663 19 1 9.1089 -6.5408 10.6622 20 6 11.1927 -6.2904 10.2730 21 7 12.0987 -5.8542 9.4254 22 14 11.7212 -7.0569 11.8925 23 1 10.5189 -7.4652 12.6625 24 1 12.5649 -8.2491 11.6239 25 1 12.5000 -6.0663 12.6782 26 6 2.2512 -3.7150 4.3884 27 6 1.7992 -3.1592 3.2096 28 1 -0.3634 0.5139 0.8901 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 3.1300 1.4425 -0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 1.9563 0.8899 35 1 1.2538 -2.5433 0.7126 36 1 2.9319 -2.2467 0.1988 37 1 4.7609 -2.3953 1.7771 38 1 5.5897 -3.3710 3.8771 39 1 5.4356 -4.4826 8.2213 40 1 5.4823 -6.0853 7.4485 41 1 7.4356 -5.9330 9.2986 42 1 9.8405 -6.1411 7.8325 43 1 9.7923 -4.5390 8.6065 44 1 13.0413 -5.9300 9.6414 45 1 1.5460 -4.0872 5.1167 46 1 0.7386 -3.0961 3.0155 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000007865702.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:13:43 Heat of formation + Delta-G solvation = -153.278462 kcal Electronic energy + Delta-G solvation = -26835.812071 eV Core-core repulsion = 22690.418933 eV Total energy + Delta-G solvation = -4145.393138 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.75733 -39.62286 -38.75724 -38.26899 -36.33911 -34.25621 -33.76405 -32.42110 -31.89930 -31.34425 -29.28492 -27.77927 -27.21248 -26.36680 -23.31872 -22.95518 -22.42970 -21.78518 -20.82146 -19.94959 -18.33205 -17.52407 -17.35327 -16.83474 -16.61273 -16.20223 -16.03106 -15.55352 -15.20105 -14.97008 -14.75116 -14.65389 -14.52576 -14.05272 -13.81534 -13.69054 -13.26657 -13.10179 -13.02773 -12.76266 -12.64565 -12.57307 -12.44975 -12.01076 -11.91404 -11.77668 -11.66055 -11.37215 -11.18139 -10.99454 -10.94898 -10.71350 -10.68738 -10.35161 -10.05743 -9.42934 -9.30213 -9.28162 -9.19222 -8.79331 -7.99711 -6.20279 -4.27616 0.34032 1.06933 2.28750 2.36802 3.15477 3.19371 3.22218 3.29510 3.32529 3.65307 3.94598 4.27187 4.32704 4.37039 4.50962 4.54721 4.61629 4.67135 4.72278 4.81836 4.86065 5.07047 5.12447 5.13018 5.16024 5.23399 5.26197 5.28241 5.33102 5.33651 5.37341 5.47347 5.68938 5.69928 5.74586 5.90969 6.02624 6.16120 6.28970 6.50588 6.76377 7.21847 7.29860 7.45120 7.57711 7.65239 7.91226 8.49093 8.70479 8.95459 9.38907 10.89899 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.027346 B = 0.001564 C = 0.001502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1023.685447 B =17900.538385 C =18643.229834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.080 3.920 3 C -0.151 4.151 4 O -0.374 6.374 5 C 0.100 3.900 6 C -0.059 4.059 7 C -0.111 4.111 8 C -0.059 4.059 9 C -0.116 4.116 10 C 0.508 3.492 11 O -0.508 6.508 12 O -0.324 6.324 13 C 0.049 3.951 14 C 0.500 3.500 15 O -0.534 6.534 16 N -0.706 5.706 17 C 0.251 3.749 18 C -0.545 4.545 19 H 0.065 0.935 20 C 0.064 3.936 21 N -0.885 5.885 22 Si 0.905 3.095 23 H -0.271 1.271 24 H -0.282 1.282 25 H -0.282 1.282 26 C -0.057 4.057 27 C -0.113 4.113 28 H 0.064 0.936 29 H 0.065 0.935 30 H 0.056 0.944 31 H 0.061 0.939 32 H 0.063 0.937 33 H 0.069 0.931 34 H 0.064 0.936 35 H 0.060 0.940 36 H 0.062 0.938 37 H 0.133 0.867 38 H 0.147 0.853 39 H 0.098 0.902 40 H 0.098 0.902 41 H 0.393 0.607 42 H 0.030 0.970 43 H 0.030 0.970 44 H 0.266 0.734 45 H 0.140 0.860 46 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.686 8.974 -19.022 32.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.022 3.978 3 C -0.208 4.208 4 O -0.294 6.294 5 C 0.023 3.977 6 C -0.059 4.059 7 C -0.129 4.129 8 C -0.077 4.077 9 C -0.117 4.117 10 C 0.352 3.648 11 O -0.398 6.398 12 O -0.238 6.238 13 C -0.028 4.028 14 C 0.283 3.717 15 O -0.412 6.412 16 N -0.356 5.356 17 C 0.130 3.870 18 C -0.583 4.583 19 H 0.083 0.917 20 C -0.140 4.140 21 N -0.522 5.522 22 Si 0.732 3.268 23 H -0.196 1.196 24 H -0.208 1.208 25 H -0.208 1.208 26 C -0.075 4.075 27 C -0.131 4.131 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.075 0.925 31 H 0.079 0.921 32 H 0.082 0.918 33 H 0.088 0.912 34 H 0.083 0.917 35 H 0.078 0.922 36 H 0.080 0.920 37 H 0.151 0.849 38 H 0.165 0.835 39 H 0.116 0.884 40 H 0.116 0.884 41 H 0.226 0.774 42 H 0.048 0.952 43 H 0.048 0.952 44 H 0.076 0.924 45 H 0.158 0.842 46 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -24.130 9.283 -19.263 32.241 hybrid contribution 0.017 -0.816 1.178 1.434 sum -24.113 8.467 -18.085 31.307 Atomic orbital electron populations 1.22312 0.95941 1.02362 1.02749 1.22120 0.93681 0.93950 0.88040 1.21871 1.02000 0.94339 1.02603 1.88040 1.86605 1.19102 1.35673 1.21397 0.99816 0.82181 0.94272 1.19862 0.93712 0.96886 0.95476 1.21081 0.94846 0.99445 0.97570 1.21649 1.00887 0.93192 0.91956 1.19158 0.94276 1.04960 0.93319 1.21231 0.80802 0.76054 0.86670 1.90828 1.56718 1.45393 1.46845 1.86595 1.24303 1.73513 1.39424 1.22895 0.95090 1.00212 0.84602 1.19868 0.87940 0.80023 0.83870 1.90705 1.66215 1.46092 1.38177 1.46362 1.10891 1.59864 1.18505 1.19185 0.72251 0.97994 0.97524 1.21248 0.92475 1.41641 1.02951 0.91695 1.24952 0.96290 0.95222 0.97515 1.69981 1.01256 1.45386 1.35565 0.86337 0.78725 0.78903 0.82802 1.19594 1.20776 1.20766 1.21248 0.93813 0.95602 0.96858 1.20960 0.99860 0.99089 0.93187 0.91642 0.91597 0.92492 0.92125 0.91828 0.91218 0.91672 0.92160 0.92004 0.84874 0.83479 0.88370 0.88371 0.77398 0.95225 0.95222 0.92428 0.84231 0.84994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.87 9.53 37.16 0.35 -0.51 16 2 C 0.08 0.47 3.34 -26.73 -0.09 0.38 16 3 C -0.15 -0.82 9.56 37.16 0.36 -0.46 16 4 O -0.37 -3.15 9.97 -35.23 -0.35 -3.50 16 5 C 0.10 0.68 5.87 36.01 0.21 0.89 16 6 C -0.06 -0.51 5.52 -104.53 -0.58 -1.09 16 7 C -0.11 -1.04 9.68 -39.64 -0.38 -1.42 16 8 C -0.06 -0.66 9.62 -39.17 -0.38 -1.04 16 9 C -0.12 -1.42 5.87 -104.99 -0.62 -2.04 16 10 C 0.51 7.42 7.90 34.61 0.27 7.69 16 11 O -0.51 -8.06 16.14 -19.25 -0.31 -8.37 16 12 O -0.32 -5.23 9.01 -47.18 -0.42 -5.66 16 13 C 0.05 0.76 5.95 36.01 0.21 0.98 16 14 C 0.50 10.01 7.91 -10.99 -0.09 9.93 16 15 O -0.53 -12.97 16.50 -14.10 -0.23 -13.20 16 16 N -0.71 -14.57 5.55 -61.48 -0.34 -14.91 16 17 C 0.25 6.54 5.43 -5.19 -0.03 6.51 16 18 C -0.54 -14.58 9.28 -34.44 -0.32 -14.90 16 19 H 0.06 1.62 7.60 -52.49 -0.40 1.22 16 20 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 21 N -0.88 -25.79 13.29 55.43 0.74 -25.06 16 22 Si 0.91 20.67 29.54 -169.99 -5.02 15.64 16 23 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 24 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 25 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 26 C -0.06 -0.59 9.60 -39.17 -0.38 -0.96 16 27 C -0.11 -0.97 9.68 -39.64 -0.38 -1.35 16 28 H 0.06 0.37 8.14 -51.92 -0.42 -0.05 16 29 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 30 H 0.06 0.26 7.87 -51.93 -0.41 -0.15 16 31 H 0.06 0.29 7.79 -51.93 -0.40 -0.12 16 32 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 33 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 34 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.06 0.32 7.81 -51.93 -0.41 -0.09 16 36 H 0.06 0.34 8.02 -51.93 -0.42 -0.07 16 37 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 38 H 0.15 1.71 7.61 -52.48 -0.40 1.31 16 39 H 0.10 1.32 8.14 -51.93 -0.42 0.90 16 40 H 0.10 1.31 8.14 -51.93 -0.42 0.89 16 41 H 0.39 6.82 8.32 -40.82 -0.34 6.48 16 42 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 43 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 44 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 45 H 0.14 1.33 7.65 -52.49 -0.40 0.93 16 46 H 0.13 0.83 8.06 -52.48 -0.42 0.40 16 LS Contribution 401.85 15.07 6.06 6.06 Total: -1.00 -33.98 401.85 -8.78 -42.76 By element: Atomic # 1 Polarization: 8.93 SS G_CDS: -6.96 Total: 1.97 kcal Atomic # 6 Polarization: 6.20 SS G_CDS: -1.93 Total: 4.28 kcal Atomic # 7 Polarization: -40.37 SS G_CDS: 0.40 Total: -39.97 kcal Atomic # 8 Polarization: -29.41 SS G_CDS: -1.32 Total: -30.73 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -33.98 -8.78 -42.76 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000007865702.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.521 kcal (2) G-P(sol) polarization free energy of solvation -33.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds